LOC110509627 (LOC106563113)


Basic Information

Item Value
gene id LOC110509627
gene name LOC106563113
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 11644033 ~ 11655110 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590624.2
CGACATCTCTCTGACAGCATTATGAAGGAACAACACCGGTGTCCCCTTTACACTTCCTTTCAGAGGCTGCTGTTACTCCTAGTGTCGCtgtgtctctccccctcctgctctGGGAGGACCTGGGCTCAGAGGAAACTAccctgtgatgtcatctctctcAACCATTCACTGGCCTATGACTGCTCGTGCAGGAAGCTACTCCAGGTACCCCACGATATCAGCTGGAATGCCACAGAGCTCGACCTGTCCTCCAACCAAATCAAGACACTCTCCAGCTCCTCGTTCTGGAACCTCCAGAATCTGACTCTGCTAGACCTTAGCTATAACTTCAACCCCCAGGAACATCCATTGAAGATAGAGGACCAAACATTCTCCATGCTGGATCAGCTGGAGGCACTGCTCCTTGACGGTAATGGCCTTTGCACAGTGCCGAGGGGCCTTCCGTCTGGGTTGCAGATTTTGTTTCTGAGGTACAATGACATCAGGACTGTAACACCGGAAGACTTCAGGGATATTCTACGAATTAAAGTCATCCGTTTAAGTGACAACTGCCAAGGGAGTGTCTGTAGTGGGACCCTGGATATTGAAAACCACACTTTTTCCAGCCTCACTAACCTGACAAACCTGACACTGTCTTTTAACAGACTGAAAGTAATCCCTAATTTTCTCCCCGCATCCCTCCAGCTGCTCAAACTCGAACGGAACCAAATCACCCACATTCAACAGCATGACCTGAGTGCACTCACTAATCTGAGCGCTCTAGACCTTTCGGGTAACTGTCCTGTGTGTTCTAACACCCCGTTCCTCTGCTTTCCCTGTAATACACCCAACGGGGCACTACAGATCCACCCAGATGCCTTCAGGAGCCTCTCCCAGCTGCAGGAGCTGAGCCTATCAGGAAACTCCCTAGAGCACCTACAAACATCCTGGTTTGAGAACCTCACCAACTTACACTACCTGTACCTCTCATTTAATCGTCTGGTTGGGGAGATAGCCAATGGGGACTTCCTCTCTGTGCTACCTTTCGTAGAAGTGATGGACTTGTCTTACAATAATGCTGGACAAAATTCCCACAACTTGACCCTCTCAAAGAATTTTTCCAAACTGGCCTCTCTGAAGACATTACACCTAGAAAACTATGTTTTTTCAGCTCTTCACAAAAATCACTTGGAACCACTTTACAGTTTAGCTAATCTGTCTGTCCTCAATTTGGGAACCAACTTCATTTATTGGACAGACCTTTCACTTTTTGAAAAGTTCCACAATTTATCCAGTGTTGGCCTctcagagaacagtctgactttcCTGTCCAAGAGGGTAGATGCCTTGTCTGTGAATGGGTATGGCTGGAGCTATGAGCCAGATATAGACAGGTACGGGCCTTTCATACACAAGGATAAATTCTACCGTCGCCATTTGCCTAACATTAAACCAGAGTGTCTTGCGTACGGTCCAGTGCTCGACCTCAGCAAAAACAACATCTTCCACATAAACCCTGATATGCTGCAGGGCCTGAACAACACAGCTTGTCTCAACCTGTCATCTAACTTCATTGGAGACATGTTCAATGGCAGTGAGTTTGTACATTTCTCCAAGCTGAAGTACTTGGATCTATCCCAGAATAAAGTCTACCTGCGCTATGAGCATGCATTCAGTGAACTGACAGCACTGGAGGTGTTGGACTTGAGTTATAATAAACATTACTTTCTGGTGGCAGGGCTAAACCACAGTTTAGCGTTCCTAGAACACCTGGATTCTCTGAAGGTTCTGAACTTGAGCTGGAATGAGATTAGCACCCTCACTGATAAAACCATGTCAAGCAGCTCCCTGCAAGAATTGAACTTCCAGGGCAACCGCCTGGACATCATGTGGAACGAGGGTCTGGACTTTAATCATCTTTTCAGAGAACTTAATAACCTGACGTCCCTGGATCTGTCATACAACCAGCTCCGCCACATCCCATCTGAGGTATACCACAACTTCCCCAAGGCCCTGAGACACTTGACTCTGAGTAAAAACGGACTTGAGGACTTTAACTGGACGATGCTCACACAACTGCCACATCTGGAGGAGCTGGACTTGAGTAAGAACCACCTGGAGCAGGTGGCCTTAACCGTCTCCACTCTTAACAGTTCACTGAGGCTGCTGGACCTGAGCCATAACAGGATTTCCCAGCTAGCGCCTGGTTTCCTCAGCGGCGCCAGGAGCCTGTATGTGCTGAACCTCAGCTTCAACCTGCTGGAGCTCATCAACCAGACAACGTTTGAAACTGGAGCTGAGAACCACCTCCAGCAGGTGTCACTACAGGGGAACCCGATCCACTGCACCTGTGACTTGCTGGAGTTCCAACTGTGGATGAGGAGTAATGAGGTGGAGATCCCTCTGCTGGCCAGCGGGGTGACGTGCGACATGCCCATGGAGAGGAAGGGCAGGTCTGTGCTGAGTTACGACATAGAGGAATGCGTGAAGGATGACAACGCAATGGCCTTCTGCATCCTCACGTTGTTACTCATCGTTCACGTTCTGTTGGTATCGCTCACAGCACACCTCTTTTACTGGGACCTGTCCTATATTCTTGACTACTGTGGGGCCAAGCTGAAGCACCAATGTCTCTTACAGCACACAGCCTGTGTCTACGATGCCTTCGTCATGTATGACACCACAGACCCGCTGGCCTCTGATTGGGTGTTGAACCACCTTAGGGTGGAACTAGAGGAGCGCGGAGAGAGGGTTCGCCCACTCTGCCTGGAGGAGCGTGATTGGATGCCAGGGGTGCCTATCATGGATAACCTTTCCAATAGTGTGCGACAGAGCAGGAAAACGGTGTTTGTGCTGACAGAGGGCTTCCTGTCGCGTGGTGTGGTTAAAATGGCCGCCCTGCTGGTGCAGCAGCGGCTGGTGGAGGAGGGTGTGGATGCCATGGTGTTGCTGCTGCTGCAGCCCCAGGTTCTGCGACGCTCACGCATCCTCCACCTGCGCAGACGGCTCTGCAGGCGCAGTGTTCTGGAGTGGCCAGCAACTGCCTGTCCGGCTGCCCAGCGCTGGTTCTGGCACAACCTGAAGAGAGCCATACGGAAAGATCAGCGAGCCACACACGCATCACTACACGGCACATACTTCACTGGGCGGTGAACTCAAGGATATGAAAGGAACTGACCAAAAACAGGAAGCCGATCAAAAACATGGCTGAGTTTACTTACCCTCAGCTTAAATGTCTCCAATTCCTACTCTGCAGTGTTCTAGAATCAGTTCCTAGAGACATGACTGTGTAGttccccttcacacacacacacacacacacacacacacacacacacac

Function

NR:

description
toll-like receptor 8

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590624.2 True 3319 mRNA 0.50 2 11644033 11655110

Neighbor

gene id symbol gene type direction distance location
LOC110509625 LOC106568355 coding downstream 118819 11456618 ~ 11525214 (-)
LOC118945324 jelt coding downstream 134091 11503158 ~ 11509942 (-)
LOC110509622 NA coding downstream 175976 11464844 ~ 11468057 (-)
LOC110509320 cryba4 coding downstream 192022 11448974 ~ 11452011 (-)
LOC110512753 LOC106568375 coding downstream 196014 11351194 ~ 11448019 (-)
vcanb LOC106568264 coding upstream 198219 11853329 ~ 11884996 (-)
xrcc4 xrcc4 coding upstream 230581 11885691 ~ 11915884 (-)
atg10 atg10 coding upstream 285520 11940630 ~ 11945825 (-)
zcchc9 zcchc9 coding upstream 306853 11961963 ~ 11966304 (-)
LOC110509644 lage3 coding upstream 471699 12126809 ~ 12127782 (-)
G2152011 NA non-coding downstream 6295 11633073 ~ 11637738 (-)
G2152055 LOC107555460 non-coding downstream 14638 11628521 ~ 11629395 (-)
G2152054 NA non-coding downstream 15975 11623592 ~ 11628058 (-)
G2151963 NA non-coding downstream 190809 11453023 ~ 11453224 (-)
G2151955 NA non-coding downstream 211125 11431821 ~ 11432908 (-)
G2152088 NA non-coding upstream 41216 11696326 ~ 11696563 (-)
G2152090 NA non-coding upstream 41846 11696956 ~ 11697288 (-)
G2152091 NA non-coding upstream 42351 11697461 ~ 11697908 (-)
G2152092 NA non-coding upstream 42827 11697937 ~ 11698168 (-)
G2152095 NA non-coding upstream 45344 11700454 ~ 11700768 (-)
LOC100135966 rps27a other downstream 399973 11241994 ~ 11244060 (-)
G2151771 NA other downstream 650154 10993166 ~ 10993879 (-)
ttll11 LOC106562979 other downstream 674732 10923070 ~ 10969315 (-)
G2151189 NA other downstream 844715 10718021 ~ 10799318 (-)
G2152107 NA other upstream 66962 11722072 ~ 11722479 (-)
G2153174 NA other upstream 994066 12649176 ~ 12649495 (-)
G2153683 NA other upstream 1432343 13087453 ~ 13091356 (-)
G2154361 LOC106563107 other upstream 2073723 13728833 ~ 13731096 (-)

Expression


Co-expression Network