edil3b (edil3)


Basic Information

Item Value
gene id edil3b
gene name edil3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 11776851 ~ 11795498 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036968092.1
gGTAAAACAATCTATAAACCAATCTGAAGAGTTTGTCGTGTGTGACAATCTGGCCTGTCTGGTTCTTGGtagacactgagtgtacaaaatatagctttttccatgatatagactgaccaggtgaatccaggtgattccttattgatgtcacttgttcaatCCACTTCAGAACCTCCATCCGTCTCTACCAGGGAGACAGGTTAGTGGACTCTGACCCTGTTCAGATGACAGACACAGCAGAGCAGCATCACTCTGATCGTAACACAGTCAAAGACTGGACACACTTGACAGCCTCAGAGTGGAGTACAGACCTGTCAGAGCTGATCTATTTCCCTGTGTAGGGAAAGTGGAGATACTTGGAGACCAGAGATAATGGGGAAgacagacatgtagacatgtagcaGTGGACAAGGTAAGAGTTGGTGAGTTCAGTGCCATCACTGTGACAGAGAATGTGTCAGGGGTCTTGGCCTGGGCATCCCGTAGTTCTGTCAGCAGACAGAAACTCAGACAGTCTGACCTGGCGATGACCGGCGGAGGCTGTAGAGGGACGTCCTATGCTCTGctacagaccagaggacaaaTAGGAAGGACAGGAGGAGTGGGCCTGGCTGCTAACAGAGGGGGATGAGCGTGTTGGCTCCAaaaaacaaccacacacacacacacgcgtcctGCAGAGCCCGAGTGTGTGCCgtctatggagagagagagagagagagagagaacccagcGAGGAAACAGTCATTCCTCATGCAGGTACAGTACAGCTATGTTGTTAATCACACCGATGGAATCATGTCCCAGTTCCACTTTGTAAGGATCTGGTTCAAAGCCGGAAGATACAtttccttttttttctttttgcAAAGAAAGAGATTTGTCCATCTCAATGTACTTGACGTCATTTTGAAATGACAGACTTTTACAGACAGGGCTATTTTTGACATTGATAACATTTCCCGACATTTCTTGTCTCTTTACTCTCAACAGCTGATGTGACTCTGGACCGTCATACAGTTCACTGTAGTTTGATGTTGCCTGACGATGGGAGGACAGTGAAACCAGGAGATGAGACGAGTGTCCCTGATAATCCACAGAGCTTTAATGAGATTCAGGGGGTGTCCTGGCCAAAGATGGCTTCTGCTCTGGACGACACCTCTGGCAGGTGGAGGTGAACAAACTCCGGTTGTCTACTCAAAGGAAAGATATGGAAACGTACTCTCCAGAGAAGGTTTACTTTTTTCTTTGACTCCTGTCTTTACGACCTCATTACTGTCTTTTTTCAGCATGCCCTTATACCTCAGAGTATTGGGTGTATGTGGAGGTTGAGGAGAGGTGGGTCTCATTTTACAAGTCCAGGGCTCTACATCTACACTTTCACTGActtctctgagagagagagagaagatctaCCCCCTGGTTGAAGTGAATGGAGAAGGCTTTGTGATCCAGGAGCTGAGATAAAGTCCGGGATGGGCGCTGGGGAGGGCAGAAATGATCTGGCAACTGGAGGGCTACTGGGTTCACATCCCCAAGACATCTCCCTACTGTTGGACAAGGTCCTTAACCCCACAACCTGCTTCCCATCCAGTGGAGATACACTACAGCTTGACCCATAGAAGACACGTTTCTGTTGTTCGCTGTAACATGTGGACAAATACagttgtgttgtcattattctAAAATATTAAGGTACAAATGGACCCACATTCGGGGACAGGAAGCTCAACCTGGGGATGCTTTCTACTTGGTAAACCTGTGTGCTCTCTCCAGCCAATCACCATCATCAATACAGAAATGAAGTGCTACGGAAACATTTAAACCAGCAGCAGGACAGTGGAAATCGGTGGTCTTAAACCTTTGAAATTTGAATTGAACATAATTCATTCATTTAATAAAACATCTGGATGTAAAGTATTGGGACTGGATCTGAGTTTCACTCCAATGTCAGGCCTGTCAGAGGAAACTGTTGCCCAATCCCATATCAGCGTAGGGGATGGTTCTCACTCTGACCAGCAGATGGAGACAAAACCTTAGGAACGGCACACGACTTCAGACCTTGACCATGAGTACCTACTAAGACTGATCGTCATTGACTGATACACCAGCTTGTGTGACTGATGTAGTGCAATACAAGGTCAGATCACCTATTTGGCAGGAGAGGGAAAAAGAGTATTCACATGGGGTCATTTAGTaactctctacctccccctctctcttctccctccatctctctccctcgcctcccCCTCTCCGAGTGAAGCATTGGCACCAATGAACCCATTGATGAACAGGCACAAGCTCCTCCAGCCAAGTCAAACAGCCTCCCAGTGCTTTAATCATGGCCTAAAAAGCCAACAACTTGGCCCACACTCTAACCCGATCCCACCTTGCCGCTACGTCCTCCCCCGCATCCCAACACTCCTACCCCCTAACCCACCCatcccaccaccacccctacccccTATCCCCTGCACAGATGCTGCATTCAGAACCAAGTTCTGCTTCGCATAAGCACAACTCTCACTGGTTTCTCTGTGTCGTGTCCGTACACTCAGCGTTCTGGGACAGGAAAACAGTTATCCAGAcactctccatcacacacatacGATACACATACAACCCAGCTGAACTTCCTCCATTTGGTCCCCGATGGGCAAAACATCTTATCTCCTCTTCATGGGACCATTCTGGCCTTATTGGTATGATGTCATCAAAAAATATGCATGCAGGCAGCTCTGTGTTTTCACATAGGCCAGCCTACACTATTCGAAATGTTTTTGCTATCGATATTAAATGGTTATTTGGCTGCCCCCACAGGGGTAGACTTTATATAACCATTTTTGGTTGCAGGTTGGACCCTTTGAGAGAACTCCACTTTTCACGAGTGCCTCGTTATGTGAATTCAAAGGATtctaacctggaaccaaaaagggtcgtCTTAGCCGAATGAACTCTTTCGGGAACCCTTTTTTTTCGAAGAGTGTACTGAATACGACCTTTATCCTGGGAAACGAGTGCCATTATTTATTTGGCCTATTTTGTTAACATTAATTATTATAATGAGGTTATACATCCATTTTCAATCATCAGGAGATTATTGTGATGGCTAAACTACAACTTCAGGTTAGTCAATTATAGCTACTGATTGTGGCGGTCAAGCAGCCGAGGTGAGATACTGCGCAGCATCACTGCGGTGAAGCGAACCAGAGAAGAGGTGGTAGCGCTCAACCTCAGGATCCCTTTGCTTTTTGTCTGTCTGCCTATTTATCTGCGCAACAAACTCGCATCTCCGGGTAAACTGATTGACAGACAGCTTGCGAGGAGGAGTCGCCAACATCATCAGCATCATCACAGCGGCCTCTGCAGCGAaggcggaggagaggagacgagagaaagAAGATAAGTTTTctgacctttgttttggttttGACCGCGGGGGAAAGCAGTAACTCGGAGATGCACCTGCTATTGTCCCTCGCGGTGCTGTGCCTCGGTGCGGCTGTGCCTCGGCAGGTGAACGgggatGAATGTGAACCTGTGTCATGTGAGGGCGATGCAGACTGTTTCACCCCCCAGTCAGAGGAGGCGCTACTCTTATCCACGCCAGACTGGGAGGAGCTGATTACAGCAGGTCCGTGCCAGCCCAACCCATGCCACCatgggggtgtgtgtgagacCACTAATGCCCAACGAGGTGATGCCTTCCTGGGGTACCACTGTCACTGCTCCCCTGGCTACTCTGGAACCCACTGCCAACACAaTGTGAATGAGTGTGAGAGTGGGCCGTGCAGGAACGGAGGTGTGTGTACAGACCGGGAGGCCAACTACACGTGTGTGTGTCCTGGAGAATACACTGGCAGGACCTGCCAGCACAAGTGTTCAGGTCCTCTGGGCATGGAGGGTGGTATCATCACCAAGGGGCAgctgtcctcctcctctgttcagcggGGCATGTTTGGTTTGCAGCACTGGAGCCCTGACCTGGCCCGGCTCCACCGCAGGGGCATGGTTAATGCCTGGAGCCCTGCACTCAGCGACCGCTGGCCCTGGATACAGGTGAACCTGCGGCAGCAGATGCGTGTGACGGGGCTGATTACCCAGGGTGCTCGGCGGCTGGGCAGCTCAGAGTATGTGAAGTCCTATAAGATCGCCCACAGCGACGACGCTAGGACCTGGAGCATGTTGAAAACCAGAGGAGACACACAGGACATgATATTCCACGGTAACTCAGACAGCAGTTCTCTCATGGCCAACACCTTCTCTTCACCAATTGAAGCACAGTACATACGGGTTTACCCTCAAGTTTGCTGGGGCCATTGTATGCTGCGCATGGAGCTGATGGGCTGCGAGCTCACAGGCTGTTCAGAGCCTCTGGGTCTAAAGGGGGGTCAGGTGCACGACTCCCAGCTGACCTCGTCCTCTGTGTACCGGACCCTGGGCATGGGTCTGCTGGCCTGGACCCCGAACAGAGCCAGACTGGACAACCAGGCCAAGGTCAACGCATGGACCGCAGCCACCAATGACCAAAACCAGTGGATACAGGTAGACCTGTTGGTTCCTACTAAGGTAACAGGTGTAGTGACTCAGGGAGCTAAGGACTTTGGCCGAGTCCAGTTTGTGCGCTCCTACAAACTAGCCTACAGCAACgatggactgaggtggacgaCATACCAGGACGAAACACAACACAAGGACAAGGTGTTCCAGGGGAACGTTGAAAATGACACCCACAGGAAGAACTCCGTCCAGCCGCCCATATATGGTCGTTTCCTCCGCCTCATCCCCTGGTCCTGGTACGGACGCATCACACTGAGGATGGAGCTACTGGGCTGCACAGAGGACGACtgaccatctctccctctctccctccgtctctctctctctctctccctctctcttctccctccgtctctttctctctcacctagctctctcttctccctccgtctctttctctctcacctagctctctc

Function

symbol description
edil3 Predicted to enable integrin binding activity. Predicted to be involved in cell adhesion. Predicted to act upstream of or within positive regulation of cell-substrate adhesion. Located in collagen-containing extracellular matrix and extracellular exosome.

NR:

description
EGF-like repeat and discoidin I-like domain-containing protein 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036968092.1 True 4979 mRNA 0.50 11 11776851 11795498

Neighbor

gene id symbol gene type direction distance location
mef2ca LOC106563077 coding upstream 847 11742203 ~ 11834606 (+)
cetn3 LOC106563079 coding upstream 56538 11716684 ~ 11720313 (+)
arrdc3b LOC106563080 coding upstream 83772 11685350 ~ 11693079 (+)
LOC110509626 LOC106563084 coding upstream 142326 11586532 ~ 11634525 (+)
LOC118945334 NA coding upstream 206151 11560912 ~ 11570700 (+)
hapln1b hapln1 coding downstream 25749 11821247 ~ 11852482 (+)
tmem167a tm167 coding downstream 120274 11915756 ~ 11926319 (+)
LOC110509638 NA coding downstream 153091 11948589 ~ 11951596 (+)
LOC110509639 NA coding downstream 160126 11955624 ~ 11961875 (+)
LOC110509640 LOC106563068 coding downstream 183943 11979441 ~ 11984838 (+)
G2152132 NA non-coding upstream 12853 11748329 ~ 11763998 (+)
G2152148 NA non-coding upstream 13926 11761826 ~ 11762925 (+)
G2152149 NA non-coding upstream 14425 11762011 ~ 11762426 (+)
G2151728 NA non-coding upstream 49775 11726805 ~ 11727076 (+)
G2151726 NA non-coding upstream 52297 11724338 ~ 11724554 (+)
G2152193 NA non-coding downstream 75579 11871077 ~ 11871721 (+)
G2152201 NA non-coding downstream 91055 11886553 ~ 11888533 (+)
G2152213 xrcc4 non-coding downstream 113122 11908620 ~ 11914282 (+)
G2152150 NA other upstream 10500 11764224 ~ 11766351 (+)
G2151555 NA other upstream 410359 11359557 ~ 11432252 (+)
G2150729 NA other upstream 1314631 10461753 ~ 10462220 (+)
LOC110509604 LOC106562973 other upstream 1467772 10064167 ~ 10309768 (+)
G2149183 NA other upstream 2402339 9374000 ~ 9374512 (+)
G2152639 NA other downstream 505294 12300792 ~ 12307438 (+)
G2153316 NA other downstream 964382 12759880 ~ 12760490 (+)
G2154294 NA other downstream 1872791 13668289 ~ 13669170 (+)
G2154391 NA other downstream 1977210 13772708 ~ 13776134 (+)
G2154438 NA other downstream 2010515 13806013 ~ 13813970 (+)

Expression


Co-expression Network