xrcc4 (xrcc4)


Basic Information

Item Value
gene id xrcc4
gene name xrcc4
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 11885691 ~ 11915884 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036967303.1
GAAGAGACGAACTGAAACTGCGGCGTCTGGCGATTTAAACTAGATTTAACACCGGTTGTAGGTTTAAGTATCAGAAGTCGTCCATCGGATATTAAAAGACACAACCAACTATCTAAAGAAGGCTAGTGCAGTTTGAGGTGTGAGATGCATGTGACGGTGCGTGAGGTCTGTATCTCCTCGGAGTCAGAGACTTCCTACTTCCTGCGAGTGGAGTGGAGGGGGCGGGACTTAGGCTCTGGCTTCCTGTTACTGCTCACTGATGGACAGAAtgcatggagaggagaggTATCAGAGGATGCAGTgcgggaggaggcagaggagttGGAGATGCAGACAGATCGTTACATCCAGGACCTCCAGCAGGCCCTGACTGGGACTGGACCCTCTACTGACTACAGCTTCACCTTGACCCATAACCCCGGCCCAATGGCCAACATGACCCTGTCCTACGAGAAGGTGCAGAGGGACATCTCGTTCTGCCTGGGTTCTGTGTTGCTGGGTAAGATTCCAGAGCCAGTGGAGGAGGTTAGAGCGTTACTGACTCACGGTCTAGGACGTGGAACCGCACTGCAGAACCACAACCACTTACTAAAGGAGGAGAACCACAGGCTCAAACAGGAGCTACAACACATCAATGCAGagtTGCAGCGGTTTGTCAGTGGGAAGGAGACACTCGAGTCAGAGCTGTACTCTCGCTTCACCCTGGTGCTGAATGAGAAGAAGGCCAAGATACGCAGTCTGCAGAAGAACCTCACACACCTGCAGGAGACCAGggaagagggagagagcagcagtccAGGGAAGGGAACGAAAAAGACGACAGGACAGACCAGAGAGGaggatgaatatgaagcgagcaCTGATGATGAGCAGTTACAGCCTGCTTCTATAGAAGCCACCCAGGggactTCGCGTAGCCGCAGCCCATTGGACGACAGTCTGAATGACATCCCAGACGTGGCACCCTCCCGTAAACGCCGCTTCCGCCACCTGCAACCTCCTGACACTGTTGCTAAGAGACCGACCTCGGAGCCAGCGCAGAAACCGAGGAGGGACCCCCTGCCATCATCCAGAGCAGCAGCCAATAAGgaccaggctccccagcattctAGTGATGTCATTCCTGATGCTGAGGACCTGTTTGAGGACATCTGAGTTCTAACCACTCACTCCTCAATCAAAttctttccctccctcactcctttcatctctctctccctccatcactttCGTCTGTCACTCTATCAGCCGGTCCCAACTCTCTTAGAACCCCTTCCCCTAATTAACCCCTTCGATGTTTGGAAATCTGAAAGATCTGGATAGGTGTAAACAGTGCGGTGATGGAGCTTCCATCCTATTCCTTCCACCTTACAGATCCAAATGTAAAAGTGTATTATTAATATCATGAATTTGGCATCCCATTTATGGTGATAATGGTAACTAATTTTAAAATGACAAAGATCCAATCAACTATGGATAGTATACCTAGTTTCACTCTGCATACATAAATCTAACGTGAGTCGGAATGTACTTTCACATAcagtgtaaaataaataaataaatatatattcagCGTACAATTGTAAGGTAACCATCCAGGCCCGGCTCGAGGAGGACATGACCGAGGGAACATTTTAaattcatggggggggggggctcttcgACCCTCCTAACAAGTTACCTTAGTCTGAAGCTATTGATGTGCACACCGGTGTCAAACTTGTCCGCAGTATGTATAGGTGCGTTGATAAACCGCAATGTGATGCTGAATTGGAAAAGCTTTGCCAGGAGGGCACCGAGCACGCCAGCTCCAAGGAAACGATGGAGACAACTCTGCGAGAGTATGTCGTTGAAAGCacaaagcattttttaaatattttttttgcaaacagaCAGAAAATGTGTTTTGAAAAATGTTTTGGCAAGCTCACAATCCTATTGCAGCTGGTTGCCTTACAATTGTACAATTTAATCAACATATattgttttaattatttattttagtgtACAGCTATTGTCAGAGGAGTTACTTTCAACGATTCAATGGTAGTCTACGCAGATGAGTATGAAAGTTGATCGATGTCTAACTGTGTTGACATGATAGCTCAGCATATACAAGCTTGTTTCCAAAGCTAAGTAGGATACATGGAGGTAGGCAACTAGATGATAGACTCGTTCTCACTGAAGTGCATTACCCCTCATATACCTGTAGGAGTCGCTGTTCAGGCAGGAATTGTTGGAGTGGATTCACATTTTATGTCAATATacgctatatatacacaaaaggatatggacaccccttcaaattcgtggatttggctatttcagccacacccgttgctgactggTTTATAaaatgagcacacagccatgtaatctccatagacaaacattggcagtagaattgccttactgaagagctcaatcattgggtgccacctttccaacaagccagTTTGTCAAGTTTTGGCCCTGCTAgacctgccccggtcaactgtaggtgctgttattgtgaagtggaaacgtctaggagcaacatcgGCTCAGCtgagaagtggtaggccacacaagctcgcaGAACAGGACTGGCAAGTGCTGAACcgcgtagcgcataaaaatcgtctgggtttccatggccgagcagcaacacacaagcctaagatcaccatgcgcaatgccaagcgtatgctggaatggtgtaaagcttgctgccattggactctaggAGCAGTGGAAATACTAGAGTCCAattggcctaatcgcccaacatcagtgcccgacttcactaatgctcctgtggctgaatggaagcaagtccccgcagcaatgttccaacatatagcagcaaagggggaccaactccatattaatgctcatgattttggaatgagatgttcgacgagcaggtgtccacatacttttggtaatgtagtgcaCCTCTTTATTTAGGTTGATGGCATGATGTTGAAACGTTGACTTTGATTCAAACACCATTTTACTCTTAACATTGAAACAACAAATATAGGATGAAAAATATTTTTACCATTTCTATGTGGAGTTTTCAACACAATTTCAACATTTACAAAGTTCTGATGATTATGTTGAAATTAGATTGTTAGTCAGGTTAGTATTTAAATTGAATCTTTATCCTAATTTCAATGTTTGCAATGCTTGTTGAAATGTGATGAAAACCGCGTTagtttactttttgaaaatccaaATGTGCTTTCCACGTGGATTCCACGTCCGCAATAGGTTGACAAATGACGTTGAAACATCGGTTCAACCACTGTGTTCCCAGTGGGTTGCTtcagtctctctatccctctacacAGGGGTGGCCAACACCTGGTTCTACTAATCAGCCTTGCTAGAACCTGACTGAGCATGTCAAGGTCCTGGCTCGCGTCCTACCCCTTCCTCTACCTAACCTAAGGACCACCAGGACCTTGACATGTCGCATCGGGTTCTAGcaaggctggaacaaaagcctgaatACCTAGCTCGACACCTCTGCACAGCCACCCTTCCTCTACCAGTATTACTTCCCGCTCTTCTCTAGCCTCCATCTCGCTGTTAATCCTCCACCACTccctcccatctccttctctattACTGTCCCTACTCAGCCCAGCCCACTACTACACAGAGGAAGTCAAGGAGACCGTTATATAGAGAGAAGGGAATtagacatatatatattttttgtagtgCAAATTTATAATAATTTATAATGCTGTAACAAAGGGGATCTTTTTGTACTCGATATGGACAAAACATTAACTGTGTAAAGATAAGTCTTTGTGCTGTTTTTAGTATGATGAAGAGAAGTGTTGGTTCTTTATGTGTATGAAACACGAGTAAAGTGTAATAAAAACGTAGGTTAACAACA

Function

symbol description
xrcc4 Predicted to enable DNA binding activity. Predicted to be involved in DNA metabolic process; positive regulation of ligase activity; and response to X-ray. Predicted to act upstream of or within DNA recombination and double-strand break repair. Predicted to be located in nucleus. Predicted to be part of DNA ligase IV complex and DNA-dependent protein kinase-DNA ligase 4 complex. Human ortholog(s) of this gene implicated in multiple myeloma. Orthologous to human XRCC4 (X-ray repair cross complementing 4).

NR:

description
DNA repair protein XRCC4

GO: NA

KEGG:

id description
K10886 XRCC4; DNA-repair protein XRCC4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036967303.1 True 3892 mRNA 0.46 8 11885691 11915884

Neighbor

gene id symbol gene type direction distance location
vcanb LOC106568264 coding downstream 695 11853329 ~ 11884996 (-)
LOC110509627 LOC106563113 coding downstream 230581 11644033 ~ 11655110 (-)
LOC110509625 LOC106568355 coding downstream 360477 11456618 ~ 11525214 (-)
LOC118945324 jelt coding downstream 375749 11503158 ~ 11509942 (-)
LOC110509622 NA coding downstream 417634 11464844 ~ 11468057 (-)
atg10 atg10 coding upstream 24746 11940630 ~ 11945825 (-)
zcchc9 zcchc9 coding upstream 46079 11961963 ~ 11966304 (-)
LOC110509644 lage3 coding upstream 210925 12126809 ~ 12127782 (-)
fgfr1b LOC106563063 coding upstream 234482 12150366 ~ 12178844 (-)
march5l LOC106563060 coding upstream 279214 12195098 ~ 12201043 (-)
G2152298 NA non-coding downstream 89155 11795221 ~ 11796536 (-)
G2152321 NA non-coding downstream 95565 11789510 ~ 11790126 (-)
G2152122 NA non-coding downstream 150689 11734772 ~ 11735002 (-)
G2152120 NA non-coding downstream 154378 11731078 ~ 11731313 (-)
G2152111 NA non-coding downstream 159020 11726464 ~ 11726671 (-)
G2152389 NA non-coding upstream 38648 11954532 ~ 11975619 (-)
G2152426 NA non-coding upstream 90191 12006075 ~ 12006339 (-)
G2152435 NA non-coding upstream 100798 12016682 ~ 12019987 (-)
G2152451 NA non-coding upstream 110464 12026348 ~ 12026560 (-)
G2152107 NA other downstream 163212 11722072 ~ 11722479 (-)
LOC100135966 rps27a other downstream 641631 11241994 ~ 11244060 (-)
G2151771 NA other downstream 891812 10993166 ~ 10993879 (-)
ttll11 LOC106562979 other downstream 916390 10923070 ~ 10969315 (-)
G2153174 NA other upstream 733292 12649176 ~ 12649495 (-)
G2153683 NA other upstream 1171569 13087453 ~ 13091356 (-)
G2154361 LOC106563107 other upstream 1812949 13728833 ~ 13731096 (-)
G2154418 LOC106563033 other upstream 1864775 13780659 ~ 13782254 (-)

Expression


Co-expression Network