LOC110509639


Basic Information

Item Value
gene id LOC110509639
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 11955624 ~ 11961875 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036967788.1
tcaggcctaccactgttttcaatggctgtcatttttattataaggcgaaatccttccagattgcagttcctagggcttccactagatgtcaacagtcttgtTTTTGATTTTCCTAATCTGCTATGTTCATTCTCCTAGCCTGCTGTGTTAGTTTCCTAAGTAACCTGCTACGTAAAGTCACTTCTGTCTGTAGCTGGGTTAGGCTTGAGATTTTTGAATGTGTATGAATGCAGAAAAACACCACTCGCAAACCAGATAGCAAAACCCTCAAGGAGatttgtttgctagctagctttcAAAGTTGTATGtaaattaaaacatgtttgtGACGCTGTATGGTATTTTATGATAACATTTTTTTATCTATCGCTCCTAAAAACGCTTTTGATACTGTTTAAAAATCTCTTGTAGTTACTTCAGTCTCCAGATAGATATTATTGGTCTATTCTGGGGTCGAGAGTACTATCATCACACTGGCCAGTCAGAGTCCACctgcagtgcgtgtgtgtgtatgtgtgtgtgtaccagccaAGTCTCAGGAATATAGAGGATTGTATGTCATATCATATTACTgagtttgttgttgtttgttgttgttgttgtttggtgACAAGTGTCTTGTCCAGTTTTCCCCCCCAATgccggggtgtgtgtgtgtatgcgcgccaCACGTGGGTGTGTCATCAAACAGACAGAGGTTGTTATTGGAACTCATTGCCACACTGTGAACCAGtgtttgtgttacttcattaTAGGGCTCCAAGCCACAGATAAGGTTTACAGATAGAGAGGAGGGTGGGACAAGGCAGGGTTACTTTTACTTAAAGGGTATGTGATTGTCACTGCCCTTTCACTCACTTGCTCACACTTAGGGACTGAACGAGGCTCGTACACGGGCTGCTCGTTTTCTCTACACTCTCTGCACACAGAAGCAATAGGGTAATGATGACCCAGAGCCTCCAGAATGGCTTCAGTCTGGAGAACCGCTACCTCCAGGATCTGAAGgggcctctgtctgtccctccgccTGCTCAGGGTGCACAGATCCTGGGTGTACGCCGGGGGTCAGGCCCTGTGGAGCCCCATAAGGACCAAGAGATTCAGAGGCATCGGTCTGGCACTGTAACCGGTCAGGGTGCTTCTCTTCTGGGCTCAGGTCTTGGGCAGATCCCTGCTCCTATAGATGTCCAGATGTGCCAGTCTATCCAGCCACGCCATGCAGATCACCAAGGAGACCTGAGTACTGGGCAGCTACTCAAATGGATGGACACCATCGCATgcctcacgtgtgtgtgtgtttgtcccttaGCTGAACGTCATGCTGGGACGGCGTGTGACACTCTCCATGGACGACATCCAGTTTGAGGAGACTGACAGGGTTGGTCAGGTGATCACCATCACGGTAATAGAACATTCACCACAAGCATGGAGCCAGCGGGACCAGAAAAGGTGGTGTTGCGGCCGGTGGAAAACCTGGGTTCTGCAGAGGAGCAGCTGCTTCATTCTCTGGCCTCAGAGAGACGAAGACTCTACAACGAACAGACGTTCAGTACCCTGCTACAAGACTACCGCCCACTAGCCAacgGTGGGTGTAGCAGGAGAGACCCACAGTCTGCCGTGTCCACAGCGTTCACGCATGTGGAGAGCGTCGAGCTGGTCCTGCCTCCACACGCTAATCACCACGGCAACACCTCCGGACGACAAATCTTGGCTTGGATGGAGAACGCAGCCACAGTGGCAGCCAGtcatttGTGTGGCCGCTTCCCTCTGAGGTCTGTAGACATGTTCCGCTTCAGAGGGCCCTCCTCTGTAGGCAACAGACTGGTCTTTAAGGCTGTGGTCAACAACACATTTAACAACAGTATTGAGGTAGGTGTCCTGGTGGAGGCCTGTAACTGTGAGGAGTGGACCGCGAACAAAGTGTGTCACATCAACAGCGCCTTCCTCATCTACCAGCTGTCTAACACACCTGGAGACTACCTTCCTGTCCCTCAAGTCACATACACCAACAAGGACTGGGAGAGGAGATACCTGTCTGCCATCGTAAGGAGATAATTATTGATGGCTAGAAAGCACACCCTGTCCTGTAAGGAGGAGGCTCCTATCTCTGTCCCCTGGGATAAAAGGAACCAGGTTAAGAGTCAACCCGCATATCACTACAAGACTGGGGAAGCCAGCAGCATCAATGACAGGATCGGTGTGTTTGTCCATGAGGAGGAGCTGCTTTGTGTCCCAAGTTCAGATGGTCATGACCTCTGCCCTCCATGCCTTCACCCTATTGGCTGACCTCACACTGTGACCTCTTTGGGGGACACTATCTCTGTGAGGAGGTAGATGGGGCCGATGAGGAGGAGACAGTGTACCACATTAAATGCCCACCCCCCATCAACGGAGGCAAGAGCCGAGACTTCGTGTTCCCATTGTCAAGGAGACAGCCCTGCGACGACAAGGACCCCTATGTGCTAGGCCTGAGGTCTGTAACCGTGGAAACATCTCCCCccctgacctcgccttctggacgatagcggggtgaacaagcagtggctcgggtggttgttgtccttgacgaTCGTTAGCCCTCACAATTCAGAGACAATGTGTTAAAACCATGTGTTCCAGGTGTGTTACCACAACCAGGTGATGTCAGGCGTGTTGCCGCATGTAACCTGGCAGGCTGGTCTAAGTCTAGGGAGGAGACGGCTAGCACACGTACCACCTTCCCggagagagacaccacacacactaaaCCTGAGTCTGATTTTGGAATTGATACTATCGGGAGACTCATGATTCTAACGAGACACCTCTAGTCTCTAGTCGAGCGG

Function

NR:

description
PREDICTED: acyl-coenzyme A thioesterase 12-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036967788.1 True 2825 mRNA 0.50 14 11955624 11961875

Neighbor

gene id symbol gene type direction distance location
LOC110509638 NA coding upstream 4028 11948589 ~ 11951596 (+)
tmem167a tm167 coding upstream 30164 11915756 ~ 11926319 (+)
hapln1b hapln1 coding upstream 105315 11821247 ~ 11852482 (+)
edil3b edil3 coding upstream 160126 11776851 ~ 11795498 (+)
mef2ca LOC106563077 coding upstream 179620 11742203 ~ 11834606 (+)
LOC110509640 LOC106563068 coding downstream 17566 11979441 ~ 11984838 (+)
LOC118945327 NA coding downstream 88567 12050442 ~ 12053419 (+)
wdr45 wdr45 coding downstream 151261 12113136 ~ 12116480 (+)
zgc:100918 LOC105015198 coding downstream 154769 12116644 ~ 12126226 (+)
LOC110509641 LOC106563065 coding downstream 166211 12128086 ~ 12142058 (+)
G2152213 xrcc4 non-coding upstream 41342 11908620 ~ 11914282 (+)
G2152201 NA non-coding upstream 67091 11886553 ~ 11888533 (+)
G2152193 NA non-coding upstream 83903 11871077 ~ 11871721 (+)
G2152259 NA non-coding downstream 43713 12005588 ~ 12005877 (+)
G2152271 NA non-coding downstream 60011 12021886 ~ 12022594 (+)
G2152443 NA non-coding downstream 62637 12024512 ~ 12024735 (+)
G2152484 NA non-coding downstream 84561 12046436 ~ 12046778 (+)
G2152150 NA other upstream 189273 11764224 ~ 11766351 (+)
G2151555 NA other upstream 589132 11359557 ~ 11432252 (+)
G2150729 NA other upstream 1493404 10461753 ~ 10462220 (+)
LOC110509604 LOC106562973 other upstream 1646545 10064167 ~ 10309768 (+)
G2149183 NA other upstream 2581112 9374000 ~ 9374512 (+)
G2152639 NA other downstream 338917 12300792 ~ 12307438 (+)
G2153316 NA other downstream 798005 12759880 ~ 12760490 (+)
G2154294 NA other downstream 1706414 13668289 ~ 13669170 (+)
G2154391 NA other downstream 1810833 13772708 ~ 13776134 (+)
G2154438 NA other downstream 1844138 13806013 ~ 13813970 (+)

Expression


Co-expression Network