zcchc9 (zcchc9)


Basic Information

Item Value
gene id zcchc9
gene name zcchc9
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 11961963 ~ 11966304 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036967791.1
CCTCAACAACAGATGGCGGTACGAGTCTATCGAGTCATTTTCCTGTCATTTCCACccaaggaagaagaagaagaacgtgGCTTCCGGCTAAACAGTAAACACATGTGGCAGCGATAGTTTTACACTTTAGGTGAGTTTATAACAGGTGTTCCAGCAATGACGCGATGGGCCAGAGCCAACAACGTCCACAAACACAAACCTGCTGAGGCAACACCCTGGAGCCAGCTTAGAACCAGagggggaggagtagggaggggtCGTCCAGGCCCTTTTGGAGGTTCAGGAGGTGCTAGCTCTAGCCATGGTCCTGGGGGTTGGGGAAGAggtaggggaggagggggagacccTCTGAGGCGAACGCAGCTCGGCGATGCTGGGATTAAGAAGCCCTGTCGGAAGAAGAAAGACTACGACAATGATGATGTGAACGGCTTCATGGAATACCTTCAGAGTGGCGGGGCTGGGACGtccaggggaggtggaggggcaggGATGGGGGGACTCAGGGAAGAGGTAGAGACAGCCCTGaagaaagacaggaggagagaggacaggaggattAAGAGACAGGATGACAAGAAGAGCAGCATGgTGTGTTTTAACTGTAGGAAGCCTGGCCATGGGTTGGCTGACTGTCCGGAGGCGGACCGAGACGAGGAGATGGGAAGGGAAATCTGCTACCGCTGTGGATCCACAGAACATGAGATCCAACGCTGCCGTGCTAAAATAGATCCtgctctagggGAATACCCGTATGCCAAGTGTTTCATCTGTAGTAAGACTGGCCACCTGTCCAGGTCCTGCCCAGATAACCCCAAAGGACTGTATGCTGCAGGAGGTTGTTGCCGTGTGTGTGGTTCAGTAGAGCACTTCCAGAAGGATTGTCCTGAGCACCAGGCCGCGTCTAACCAAGTGACCTTGGGCTGGCTATCCAATAACATGAGTGCCGACCACGAGGAAGTGCATGTGCCTGTGAAGAAAGCCCCGCCCAAACGGGCCAAGGTAGTGGTCTTCTGACCTGCCAATCCACGCAGAGGACTCGCCAGATTGGACAGGACTGACATCGACACATCCCAAGACTGAAATCCACGAAGGGCGTTCGTTCTGTCAccgttctcactctctctctctgagctttGACAAACAACATCCATAGTCAGGGAAAATGGAGAGCTGCTCTTGACTGCCATATTGGAAAGCGCCCTCTGTGGTCTCACACCCTGGACTCTTGTGTATAGGATTGGAAGTGATTTGTATGGATGGGACGAGACTGGAGCCTGTAGTGTATGCTAGCTAGCGGGTCGCTCCTGTATCTAAAGATGTTTTTTTTATATCTCGGTAGCCATCTATCCTGTGTGTCTCATGTTTGGTGGTGTGTTCTCTAATCTATCCCCAGGTGTCTGAGAAACAAAAAGGTTAAAAATATAGGTTTTTATTTGCATTTCACAGAATTTTGTTTTGTCACCGAGTATCACTATTACTGCACGTTCACTCACATCAACATCTGAAATATTTCTTGCAAAATTCAATAAATTAGACTTATATTA
>XM_036967790.1
ATAAATTCTCAACCTCAACAACAGATGGCGGTACGAGTCTATCGAGTCATTTTCCTGTCATTTCCACccaaggaagaagaagaagaacgtgGCTTCCGGCTAAACAGTAAACACATGTGGCAGCGATAGTTTTACACTTTAGGTGTTCCAGCAATGACGCGATGGGCCAGAGCCAACAACGTCCACAAACACAAACCTGCTGAGGCAACACCCTGGAGCCAGCTTAGAACCAGagggggaggagtagggaggggtCGTCCAGGCCCTTTTGGAGGTTCAGGAGGTGCTAGCTCTAGCCATGGTCCTGGGGGTTGGGGAAGAggtaggggaggagggggagacccTCTGAGGCGAACGCAGCTCGGCGATGCTGGGATTAAGAAGCCCTGTCGGAAGAAGAAAGACTACGACAATGATGATGTGAACGGCTTCATGGAATACCTTCAGAGTGGCGGGGCTGGGACGtccaggggaggtggaggggcaggGATGGGGGGACTCAGGGAAGAGGTAGAGACAGCCCTGaagaaagacaggaggagagaggacaggaggattAAGAGACAGGATGACAAGAAGAGCAGCATGgTGTGTTTTAACTGTAGGAAGCCTGGCCATGGGTTGGCTGACTGTCCGGAGGCGGACCGAGACGAGGAGATGGGAAGGGAAATCTGCTACCGCTGTGGATCCACAGAACATGAGATCCAACGCTGCCGTGCTAAAATAGATCCtgctctagggGAATACCCGTATGCCAAGTGTTTCATCTGTAGTAAGACTGGCCACCTGTCCAGGTCCTGCCCAGATAACCCCAAAGGACTGTATGCTGCAGGAGGTTGTTGCCGTGTGTGTGGTTCAGTAGAGCACTTCCAGAAGGATTGTCCTGAGCACCAGGCCGCGTCTAACCAAGTGACCTTGGGCTGGCTATCCAATAACATGAGTGCCGACCACGAGGAAGTGCATGTGCCTGTGAAGAAAGCCCCGCCCAAACGGGCCAAGGTAGTGGTCTTCTGACCTGCCAATCCACGCAGAGGACTCGCCAGATTGGACAGGACTGACATCGACACATCCCAAGACTGAAATCCACGAAGGGCGTTCGTTCTGTCAccgttctcactctctctctctgagctttGACAAACAACATCCATAGTCAGGGAAAATGGAGAGCTGCTCTTGACTGCCATATTGGAAAGCGCCCTCTGTGGTCTCACACCCTGGACTCTTGTGTATAGGATTGGAAGTGATTTGTATGGATGGGACGAGACTGGAGCCTGTAGTGTATGCTAGCTAGCGGGTCGCTCCTGTATCTAAAGATGTTTTTTTTATATCTCGGTAGCCATCTATCCTGTGTGTCTCATGTTTGGTGGTGTGTTCTCTAATCTATCCCCAGGTGTCTGAGAAACAAAAAGGTTAAAAATATAGGTTTTTATTTGCATTTCACAGAATTTTGTTTTGTCACCGAGTATCACTATTACTGCACGTTCACTCACATCAACATCTGAAATATTTCTTGCAAAATTCAATAAATTAGACTTATATTA

Function

symbol description
zcchc9 Predicted to enable nucleic acid binding activity and zinc ion binding activity. Orthologous to human ZCCHC9 (zinc finger CCHC-type containing 9).

NR:

description
PREDICTED: zinc finger CCHC domain-containing protein 9

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K17578 ZCCHC9; zinc finger CCHC domain-containing protein 9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036967791.1 False 1547 mRNA 0.51 6 11961963 11966292
XM_036967790.1 True 1544 mRNA 0.51 6 11961963 11966304

Neighbor

gene id symbol gene type direction distance location
atg10 atg10 coding downstream 16138 11940630 ~ 11945825 (-)
xrcc4 xrcc4 coding downstream 46079 11885691 ~ 11915884 (-)
vcanb LOC106568264 coding downstream 76967 11853329 ~ 11884996 (-)
LOC110509627 LOC106563113 coding downstream 306853 11644033 ~ 11655110 (-)
LOC110509625 LOC106568355 coding downstream 436749 11456618 ~ 11525214 (-)
LOC110509644 lage3 coding upstream 160505 12126809 ~ 12127782 (-)
fgfr1b LOC106563063 coding upstream 184062 12150366 ~ 12178844 (-)
march5l LOC106563060 coding upstream 228794 12195098 ~ 12201043 (-)
npy8ar LOC106563058 coding upstream 271399 12237703 ~ 12263143 (-)
zgc:86599 LOC106567989 coding upstream 346837 12313141 ~ 12320957 (-)
G2152360 NA non-coding downstream 66759 11894709 ~ 11895204 (-)
G2152298 NA non-coding downstream 165427 11795221 ~ 11796536 (-)
G2152321 NA non-coding downstream 171837 11789510 ~ 11790126 (-)
G2152122 NA non-coding downstream 226961 11734772 ~ 11735002 (-)
G2152426 NA non-coding upstream 39771 12006075 ~ 12006339 (-)
G2152435 NA non-coding upstream 50378 12016682 ~ 12019987 (-)
G2152451 NA non-coding upstream 60044 12026348 ~ 12026560 (-)
G2152470 NA non-coding upstream 72350 12038654 ~ 12038943 (-)
G2152471 NA non-coding upstream 72883 12039187 ~ 12039474 (-)
G2152107 NA other downstream 239484 11722072 ~ 11722479 (-)
LOC100135966 rps27a other downstream 717903 11241994 ~ 11244060 (-)
G2151771 NA other downstream 968084 10993166 ~ 10993879 (-)
G2153174 NA other upstream 682872 12649176 ~ 12649495 (-)
G2153683 NA other upstream 1121149 13087453 ~ 13091356 (-)
G2154361 LOC106563107 other upstream 1762529 13728833 ~ 13731096 (-)
G2154418 LOC106563033 other upstream 1814355 13780659 ~ 13782254 (-)
G2154637 NA other upstream 2034221 14000525 ~ 14010167 (-)

Expression


Co-expression Network