LOC110509644 (lage3)


Basic Information

Item Value
gene id LOC110509644
gene name lage3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 12126809 ~ 12127782 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590654.2
CACATCAGATTGTAAATCTATATTTGTTGCATTCAGACGAATCTGCGGTCGCCACATCTTGATTTACTTAGAAGAAAAACCATCATGGCGGCGCCCTGCACGGAAAACAATCACAAGCAAGGCAAATTGGAATTTGTACTAGACGTCCCGTTCCCATCAAGTCGCGAGGCGTCCATCGCGCTCCAGTCCCTCTCCCCAGACCGTGAGCCCCGGAAAGGAGGCATCAGCAAGGAGCTCACGGTGTCCGGCTgcacgctgtctgtGAGGTGGAGAGCAGATGAGGCCCGTATTCTGCGTGTCTCTGTGGGGTCGTTTATGGACCACCTCTCCCTTGTGATGGAGACCATGGAGGCCTTTGGACCCCCTGTCTCTGTGACCACACAAACGCACACCGTCAGCTCTACGATGACATGATGACcagagggaaagaagagaaacCCAGGATGAGCTGTAATGATCCCCAGTACAGAGGGACACCCATGTCCCAATTTCCATCATTCTATTCAAATAAGTGGAACTActggaacaaaaaaaaaaaacagaagtacAAGTGCTTTTTATTTAGACACATGGGAATTGCCTCATTTCAGTGACATATGGATAGACTATTTCTTTGTTTAGATTTGTCTATGTATTCATTTGGTTGTATTGTGGAATAAACTTTCTATTTTTCAAAATGA

Function

symbol description
lage3 Predicted to be involved in tRNA threonylcarbamoyladenosine metabolic process. Located in cytoplasm and nuclear body. Part of EKC/KEOPS complex. Implicated in Galloway-Mowat syndrome 2.

NR:

description
EKC/KEOPS complex subunit LAGE3

GO: NA

KEGG:

id description
K15902 PCC1, LAGE3; EKC/KEOPS complex subunit PCC1/LAGE3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590654.2 True 680 mRNA 0.46 3 12126809 12127782

Neighbor

gene id symbol gene type direction distance location
zcchc9 zcchc9 coding downstream 160505 11961963 ~ 11966304 (-)
atg10 atg10 coding downstream 180984 11940630 ~ 11945825 (-)
xrcc4 xrcc4 coding downstream 210925 11885691 ~ 11915884 (-)
vcanb LOC106568264 coding downstream 241813 11853329 ~ 11884996 (-)
LOC110509627 LOC106563113 coding downstream 471699 11644033 ~ 11655110 (-)
fgfr1b LOC106563063 coding upstream 22584 12150366 ~ 12178844 (-)
march5l LOC106563060 coding upstream 67316 12195098 ~ 12201043 (-)
npy8ar LOC106563058 coding upstream 109921 12237703 ~ 12263143 (-)
zgc:86599 LOC106567989 coding upstream 185359 12313141 ~ 12320957 (-)
LOC110509322 LOC106568012 coding upstream 225893 12353675 ~ 12363879 (-)
G2152843 wdr45 non-coding downstream 10312 12113197 ~ 12116497 (-)
G2152834 NA non-coding downstream 21352 12105255 ~ 12105457 (-)
G2152515 NA non-coding downstream 59311 12067274 ~ 12067498 (-)
G2152514 NA non-coding downstream 60384 12066181 ~ 12066425 (-)
G2152511 NA non-coding downstream 61933 12064657 ~ 12064876 (-)
G2152855 LOC106563065 non-coding upstream 11872 12139654 ~ 12140418 (-)
G2152858 NA non-coding upstream 17802 12145584 ~ 12146169 (-)
G2152880 NA non-coding upstream 65467 12193249 ~ 12193554 (-)
G2152850 NA non-coding upstream 87195 12214977 ~ 12216997 (-)
G2152107 NA other downstream 404330 11722072 ~ 11722479 (-)
LOC110509625 LOC106568355 other downstream 601657 11456618 ~ 11525214 (-)
LOC100135966 rps27a other downstream 882749 11241994 ~ 11244060 (-)
G2151771 NA other downstream 1132930 10993166 ~ 10993879 (-)
G2153174 NA other upstream 521394 12649176 ~ 12649495 (-)
G2153683 NA other upstream 959671 13087453 ~ 13091356 (-)
G2154361 LOC106563107 other upstream 1601051 13728833 ~ 13731096 (-)
G2154418 LOC106563033 other upstream 1652877 13780659 ~ 13782254 (-)
G2154637 NA other upstream 1872743 14000525 ~ 14010167 (-)

Expression


Co-expression Network