march5l (LOC106563060)


Basic Information

Item Value
gene id march5l
gene name LOC106563060
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 12195098 ~ 12201043 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036967297.1
GATTCCAAAAATCCGTAACCCGGAAGTACTTTATTATTCTTGTCTGCTTTATGGTGGTGACATAAAGCAGTTGAAGATTATTTAGCGATCAAAACTCTTTTCTTGTCATTCTCTATTTTAAAACTGACTGTGAGGTACTTCGGGGTATTTATATAGAGGCATTATTGAGGTCCTTCCTGGCTGGCCCATGCTGAGACAGGGACCTAGAGGAACTGAACGGACTCAACATGGCCTGTGTAGAGGAGCCccctgagaagCACTGCTGGGTGTGTTttgcgacagagagagaggaccgcGTGGCAGAGTGGGTGAGCCCCTGCAGGTGTAAAGGCTGTACCAAGTGGATCCACCAGGCCTGCCTGCAGCGCTGGCtcgatgaaaagcagaaaggaAACAGTGGAGGAGCTGTCAGCTGCCCTCAGTGTGGCACAGAGTACAGCATCGTCTTCCCCAACATGGGGCCATTGGTTTACTTCCTCCAGCAGGTGGACAAGGCTCTGTCGCGGGCCAGTCCGTTCGCTGCtgctggggtggtggtggggacaGTCTATTGGTCAGCTGTCACCTATGGAGCTGTGACTGTCATGCAGGTGGTGGGCCATAAGAAGGGCTTGGATGTGATGGAGAGAGCAGATCCTCTGTTCCTCCTGATGGGTCTACCTACCATCCCTGTGATGCTGGTCCTGGGCAAGATGATACGTTGGGAGGACTACATACTGAGGCTGTGGCAGAGACACTCCTCTAAACTACAGCTGCTAgttccagGTATAGGGCGTCCGTTGCCCCGTGTGCCAGCTGATGGGAGTAATGGAGGGGACCACCTGTCAGTGTCTCGTACTTTGTGTGGAGCTCTCATCTTCCCCTCCGTGGCCAACCTGGTGGGACGGCTGATCTTCAGCAGGGTACCTTCATCTCTGCAACGCACCGttctgGGTGGTATAGCGTTTGTGGTGATGAAGGGAGTGTTGAAGGTGTATTTCAAACAGCAGCAGTACCTCACCCAGGCCAACCGCCACATCCTCaactacccagagagagagagggacatggatggagagggacggagtgagggaggagaggacgacaCAGAGGATAGTGGAAACGAGTGAACACAACACTCCCCCCTAACCCTAGAGGGcgaaggagggacagagaggtagagcggAGATATAATAAGTTGGAGCAGAAACGATTGACAGCCACCCAGAATCCTCCCTGTTCCCTGACCTCACACAAAGAGAAACCTGCAATCAAGCACAATGTAGTTTTATTTTACTCAGACAAGGGGTGTGTTTAAGAGGTGTGTCACGTTTCCAAACAGATAACTTGTCAAATAGAAATGCAGTTGTGAGTTTTTTCCTTTGAAAGTGTTTTCTCCCATTGGTATCACCTGAACTCAACCATGCTCTGATATTTCATTGTAAGACATCCAcccaatcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcacgcgtgtctACACCTGGGGTGTCGAATCCGGCCCGTGGGTGGtttgagtatatatatataagaacAATATTTTGCAAGTTTTTACTACAAGGAAATATAAACCATTTTTAGTGCTGCCCTTTGGACCTCGTTGAAGaccaaacacccccccccccggggtaaaAGGAGTTCGACACCCCTGGTCTACGTTGTAGAACCCTTGCTATTTTATTTGCCTGTAAGAATGAATTAGCTAATAAAGTGATTTGATTGTTAAATACTA

Function

NR:

description
E3 ubiquitin-protein ligase MARCH5

GO:

id name namespace
GO:0090344 negative regulation of cell aging biological_process
GO:0051865 protein autoubiquitination biological_process
GO:0090140 regulation of mitochondrial fission biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005741 mitochondrial outer membrane cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036967297.1 True 1776 mRNA 0.50 7 12195098 12201043

Neighbor

gene id symbol gene type direction distance location
fgfr1b LOC106563063 coding downstream 16254 12150366 ~ 12178844 (-)
LOC110509644 lage3 coding downstream 67316 12126809 ~ 12127782 (-)
zcchc9 zcchc9 coding downstream 228794 11961963 ~ 11966304 (-)
atg10 atg10 coding downstream 249273 11940630 ~ 11945825 (-)
xrcc4 xrcc4 coding downstream 279214 11885691 ~ 11915884 (-)
npy8ar LOC106563058 coding upstream 36660 12237703 ~ 12263143 (-)
zgc:86599 LOC106567989 coding upstream 112098 12313141 ~ 12320957 (-)
LOC110509322 LOC106568012 coding upstream 152632 12353675 ~ 12363879 (-)
gfra2b LOC106563053 coding upstream 356089 12557132 ~ 12627138 (-)
LOC110509362 NA coding upstream 525087 12726130 ~ 12726962 (-)
G2152880 NA non-coding downstream 1544 12193249 ~ 12193554 (-)
G2152858 NA non-coding downstream 48929 12145584 ~ 12146169 (-)
G2152855 LOC106563065 non-coding downstream 54680 12139654 ~ 12140418 (-)
G2152843 wdr45 non-coding downstream 78601 12113197 ~ 12116497 (-)
G2152850 NA non-coding upstream 13934 12214977 ~ 12216997 (-)
G2152891 NA non-coding upstream 17844 12218887 ~ 12219105 (-)
G2152892 NA non-coding upstream 18151 12219194 ~ 12219474 (-)
G2152893 NA non-coding upstream 18504 12219547 ~ 12220652 (-)
G2152896 NA non-coding upstream 24905 12225948 ~ 12226157 (-)
G2152107 NA other downstream 472619 11722072 ~ 11722479 (-)
LOC110509625 LOC106568355 other downstream 669946 11456618 ~ 11525214 (-)
LOC100135966 rps27a other downstream 951038 11241994 ~ 11244060 (-)
G2151771 NA other downstream 1201219 10993166 ~ 10993879 (-)
G2153174 NA other upstream 448133 12649176 ~ 12649495 (-)
G2153683 NA other upstream 886410 13087453 ~ 13091356 (-)
G2154361 LOC106563107 other upstream 1527790 13728833 ~ 13731096 (-)
G2154418 LOC106563033 other upstream 1579616 13780659 ~ 13782254 (-)
G2154637 NA other upstream 1799482 14000525 ~ 14010167 (-)

Expression


Co-expression Network