zgc:86599 (LOC106567989)


Basic Information

Item Value
gene id zgc:86599
gene name LOC106567989
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 12313141 ~ 12320957 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590664.2
GTAAAAATATTAAACGTCATCAGCGTGCTGCcagttgtattttcaaccagaagTCGAAATGGCTGCAAGGTTACTGCTCCGATCGTCCATCAGGGCCGCTACAACTTGCCGGGCCGCACCGGTCCCTATTCTCACCCGCGGCATGGCTGCTGGAGGCATCCCCACCGACGAGGAGCAGGCCACTGGTCTGGAGAAGATCGTTATGAAGGCTGCCCAACAGGGCGCGGACCCCTACAGCATGCTGAAACCCAAGGAGTATGCTGGCTCCAAGGCTGACCCTCATCTGGTGCCCTCCGTCACCACAAAGAGGATTGTGGGCTGTGTCTGTGAGGAGGATAACACAGCAGTGGTGTGGTTCTGGCTCCATCAGGGCGAGGCTCAGCGCTGTCCCTCCTGTGGCTCCCACTACAAACTGGTGCCCCACGAGCTGCCACACTAAAATATATACACCCTCTAtctattatatatatacatacatacatacacaccaccaaAAAAAAACACACCTATTCCCTTACATTCACTCTGAAAGATTCCAGCTTCTTTAGAATGGGGTGAAGTGGGGTTAGACAGTGATGTCAGAAATCACAATGCCCTTTCAGGAAGTGTATTTGCACATTAGGTGTAGGGGTTTCTAAATTAGAACATTGTGCTCTGTGCACTTTCTGGATTCCTTTTTATGATTTCTTTGCTGTCCAATTCTTTATCTCATCCTAGAGTCTACTTGATGATCTAACCTCAATGTCGGTCTGTGCTTACAGTGCCAGTTATTGTTTTAAATGTACCAAAAGCCTAGGCTTTACGGTGTGGGACACAATGTTATTGTTCAAGCAATTATATTCAAACAGCAGTTTACGTTGACGTATGTACTGTACAATGTTACTTGGTCCAGTTTACCCCTCTTATCAAACCAATAAACTCTTTAACTCCTCA

Function

NR:

description
Cytochrome c oxidase subunit 5B, mitochondrial precursor

GO:

id name namespace
GO:1902600 proton transmembrane transport biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005740 mitochondrial envelope cellular_component
GO:0004129 cytochrome-c oxidase activity molecular_function

KEGG:

id description
K02265 COX5B; cytochrome c oxidase subunit 5b

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590664.2 True 933 mRNA 0.47 4 12313141 12320957

Neighbor

gene id symbol gene type direction distance location
npy8ar LOC106563058 coding downstream 49998 12237703 ~ 12263143 (-)
march5l LOC106563060 coding downstream 112098 12195098 ~ 12201043 (-)
fgfr1b LOC106563063 coding downstream 134297 12150366 ~ 12178844 (-)
LOC110509644 lage3 coding downstream 185359 12126809 ~ 12127782 (-)
zcchc9 zcchc9 coding downstream 346837 11961963 ~ 11966304 (-)
LOC110509322 LOC106568012 coding upstream 32718 12353675 ~ 12363879 (-)
gfra2b LOC106563053 coding upstream 236175 12557132 ~ 12627138 (-)
LOC110509362 NA coding upstream 405173 12726130 ~ 12726962 (-)
LOC110509658 LOC106563051 coding upstream 460887 12781844 ~ 12786031 (-)
LOC110509659 LOC106563050 coding upstream 661173 12982130 ~ 13001842 (-)
G2152913 NA non-coding downstream 230 12312717 ~ 12312911 (-)
G2152941 NA non-coding downstream 4052 12308859 ~ 12309089 (-)
G2152937 NA non-coding downstream 8552 12297891 ~ 12304589 (-)
G2152936 NA non-coding downstream 18267 12294657 ~ 12294874 (-)
G2152920 NA non-coding downstream 49596 12263261 ~ 12263545 (-)
G2152994 LOC101072524 non-coding upstream 71117 12392074 ~ 12392823 (-)
G2152996 LOC106563054 non-coding upstream 71968 12392925 ~ 12395321 (-)
G2153033 NA non-coding upstream 136496 12457453 ~ 12458594 (-)
G2153151 NA non-coding upstream 309866 12630823 ~ 12631056 (-)
G2153157 NA non-coding upstream 315089 12636046 ~ 12636370 (-)
atg10 atg10 other downstream 368988 11940630 ~ 11945825 (-)
G2152107 NA other downstream 590662 11722072 ~ 11722479 (-)
LOC110509625 LOC106568355 other downstream 787989 11456618 ~ 11525214 (-)
LOC100135966 rps27a other downstream 1069081 11241994 ~ 11244060 (-)
G2151771 NA other downstream 1319262 10993166 ~ 10993879 (-)
G2153174 NA other upstream 328219 12649176 ~ 12649495 (-)
G2153683 NA other upstream 766496 13087453 ~ 13091356 (-)
G2154361 LOC106563107 other upstream 1407876 13728833 ~ 13731096 (-)
G2154418 LOC106563033 other upstream 1459702 13780659 ~ 13782254 (-)
G2154637 NA other upstream 1679568 14000525 ~ 14010167 (-)

Expression


Co-expression Network