atp6v1b2 (LOC106563054)


Basic Information

Item Value
gene id atp6v1b2
gene name LOC106563054
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 12377064 ~ 12394568 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036967965.1
AGTTTTGCTGTCACGACTTGTCTGCTCCAACTCCAATTCAGAGGTAAACATGGCGTTGAAGGTGCTGAAGGGAATGGTCAGCGGAGCTGTTAACGAGCTCTCATCAGCCGTTACCGGCAACAAGACGGCTGCCTCCCGGGAGCAAGTCCTGGCCGTTAAACGCGACTACATCTCCCAGCCGCGCCTGACCTATAAGACAGTGTCTGGGGTGAACGGGCCTCTCGTGATTCTGGACCAGGTGAAGtTCCCCAGGTATGCAGAGATCGTCCACCTGACCCTGCCAGATGGAACCAAGAGGAGTGGCCAGGTGTTGGAGGTTACAGGGTCTAAAGCCGTGGTGcaggtgtttgAGGGGACATCAGGTATTGATGCTAAGAAGACCAGCTGTGAGTTTACAGGAGACATCCTACGCACCCCTGTCTCTGAAGATATGCTGGGACGCGTGTTTAATGGATCAGGCAAGCCCATCGACAAAGGCCCCACAGTGATGGCAGAAGACTACCTGGACATCATGGGCCAGCCTATCAACCCTCAGTGTCGTATCTACCCGGAGGAGATGATCCAGACAGGGATCTCTGCTATAGACGGCATGAACAGCATCGCTAGGGGGCAGAAAATACCCATCTTCTCTGCTGCAGGACTGCCACACAATGAGatagCGGCTCAGATCTGTCGCCAGGCAGGCCTGGTGAGGAAGTCTAAAGATGTGATGGACTACAGTGATGACAACTTCGCTATCGTCTTCGCCGCAATGGGGGTCAACATGGAGACAGCTCGGTTCTTCAAGTCAGACTTTGAGGAGAATGGTTCCATGGACAACGTCTGTCTGTTCCTCAACCTGGCCAACGACCCCACTATAGAGCGTATCATCACGCCCCGCCTAGCTCTAACATCAGCAGAGTATCTGGCCTACCAGTGTGAGAAGCACGTCCTTGTCATCCTGACTGACATGAGCTCCTATGCAGAGGCGCTACGagagGTCTCAGCGGCCAGAGAGGAGGTCCCAGGTCGTCGTGGTTTCCCAGGTTACATGTACACTGACCTTGCCACCATCTACGAGAGAGCTGGTCGGGTGGAGGGACGCAACGGCTCTATCACCCAGATCCCTATACTAACTATGCCCAACGATGacatCACTCACCCCATCCCTGATCTGACAGGGTACATCACTGAGGGACAGATCTATGTGGACAGACAACTGCACAACAGACAGatctATCCTCCCATCAATGTTCTGCCATCACTGTCTCGTCTGATGAAGTCAGCCATCGGAGAGGGGATGACACGCAAAGACCACTCTGATGTCTCCAACCAGCtgtatgcgTGTTATGCTATAGGTAAGGACGTGCAGGCGATGAAGGCTGTGGTAGGAGAGGAGGCTCTGACGCCTGATGATCTTCTCTACCTGGAGTTCCTACAGAAGTTTGAGAAGAACTTCATCGCCCAGGgagCCTATGAGAACAGGACTGTGTTTGAGACACTGGATATCGGCTGGCAGCTGATGAGAATCTTCCCCAAAGAGATGCTGAAGAGAATCCCTCAGAGCACGCTGGCAGAGTTCTACCCCCGCTTGAAGTAATGATGACAAACATAGGAATGCATAGTGACACACACAACTCCAACCCTTCCCTCTTGCTCGGCCTCTTTGTAAATGGTGTTGCTGTTGTAACATTGCCAGTAGCTTCTGTACTGTACGCATTATCATAGGCTAGTACTGATACTGTCACACACAGAGGTAACCCCTTACCCGAACAGATAGACCCGTAGAAGTAGAAGATGCAGATGATGGAGACAGTGGTTTCCAAGCCAGAGAGGTTCTCTCTGACCAGCAGAGCCAAATAGCCTGGTAATAGGGTCTGGGATTTTCCCTGGTCAGATCACATGATCAGGAAAATCTCCTGGCCTTGGCTGTTAGATGTattggatggatagatggacggAAAGGAGCTGGAGGAATAGTGAATGGTCTGTTATAAGTCAGAGGGATGGTATAAGGTATTTTTAACAGGATGTGTAGGTGTACTTTAGGCGTACTGTAGGTGTAGACTAGTGAATATGCAGTGATGATGCATGTGTATGAAAGATGGGCTCAAGGCTAACAGCCTATTTCACTCACAAGTCATTGTTTACGTTTCTAATGGCCTTTTGTTATGACCATATAAGTTGCCTGTGCGTTGCTCCTAGTATCTTTTGCATAGATCAGTGCCGTTTCTGCGCCGAATTAACCCAAAAGCCCCCTTAATTCATTGAACTAAAGCCAGAGATACAACACACAAACTGCCGGTTGTTATTATTACCTGTTCACTGAGTGCACAAACATTAGGAAcgtcttcctaatat

Function

NR:

description
V-type proton ATPase subunit B, brain isoform-like

GO:

id name namespace
GO:0046034 ATP metabolic process biological_process
GO:0033180 proton-transporting V-type ATPase, V1 domain cellular_component
GO:0005524 ATP binding molecular_function

KEGG:

id description
K02147 ATPeV1B, ATP6B; V-type H+-transporting ATPase subunit B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036967965.1 True 2340 mRNA 0.50 14 12377064 12394568

Neighbor

gene id symbol gene type direction distance location
dusp11 dusp11 coding upstream 4717 12365542 ~ 12372347 (+)
tcf7l1a LOC106563056 coding upstream 23592 12328752 ~ 12353472 (+)
actr1 LOC106563059 coding upstream 162346 12206283 ~ 12214718 (+)
stc1l LOC106563064 coding upstream 232793 12142150 ~ 12144271 (+)
LOC110509641 LOC106563065 coding upstream 235006 12128086 ~ 12142058 (+)
LOC110509656 NA coding downstream 44014 12438582 ~ 12445321 (+)
LOC110509661 LOC106563047 coding downstream 623485 13018053 ~ 13088171 (+)
LOC110509665 NA coding downstream 831839 13226407 ~ 13230321 (+)
arsb arsb coding downstream 839903 13234471 ~ 13259942 (+)
LOC110509667 LOC106563044 coding downstream 868098 13262666 ~ 13336582 (+)
G2152646 LOC106567989 non-coding upstream 33482 12313143 ~ 12343582 (+)
G2152645 NA non-coding upstream 64903 12311906 ~ 12312161 (+)
G2152642 NA non-coding upstream 69315 12307549 ~ 12307749 (+)
G2152621 NA non-coding upstream 101383 12275440 ~ 12275681 (+)
G2152608 NA non-coding upstream 120186 12256622 ~ 12256878 (+)
G2152715 NA non-coding downstream 82423 12476991 ~ 12477389 (+)
G2152741 NA non-coding downstream 159014 12553582 ~ 12558205 (+)
G2153147 NA non-coding downstream 234968 12629536 ~ 12629832 (+)
G2153148 NA non-coding downstream 235631 12630199 ~ 12630421 (+)
G2153150 NA non-coding downstream 236463 12631031 ~ 12631382 (+)
G2152639 NA other upstream 69626 12300792 ~ 12307438 (+)
G2152150 NA other upstream 610713 11764224 ~ 11766351 (+)
G2151555 NA other upstream 1010572 11359557 ~ 11432252 (+)
G2150729 NA other upstream 1914844 10461753 ~ 10462220 (+)
LOC110509604 LOC106562973 other upstream 2067985 10064167 ~ 10309768 (+)
G2153316 NA other downstream 365312 12759880 ~ 12760490 (+)
G2154294 NA other downstream 1273721 13668289 ~ 13669170 (+)
G2154391 NA other downstream 1378140 13772708 ~ 13776134 (+)
G2154438 NA other downstream 1411445 13806013 ~ 13813970 (+)
G2154512 NA other downstream 1538680 13915670 ~ 13935819 (+)

Expression


Co-expression Network