LOC110509664 (bhmt)


Basic Information

Item Value
gene id LOC110509664
gene name bhmt
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 13165540 ~ 13171705 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005040448.1
CCACACCCCTCCTTCGGCATATAAAGGCAAACGGGTCATGGTATCAAACCCTCTCCAAATCTAGAGGAAGCCTGTGTTTGAGAAGGAGTGTCTCAAGTACAAGTGCAATCACCAATGATCATGGCACCAGCTGGAGCTAAGAGAAACATTCTGGAGCGCCTGGATGCAGGCGAGATTGTTATTGGGGATGGAGGTTTCGTCTTCGCCCTGGAGAAGAGGGGCTATGTGAAGGCGGGTCCCTGGACTCCTGAGGCTGCCGCCGAGCACCCCGAGGCTGTGAGACAGCTGCACCGAGAATTCCTGCGGGCGGGGTCAAATGTCATGCAGACTTTCACCTTCTACGCCAGCGACGATAAACTGGAGAACAGGGGTAACGCTCAGCGCTTCACTGGCACACAAATCAACGAGGCCGCCTGTGACCTGGCCAGGGAGGTGGCCAATGAGGGTGACGCGATGGTGGCGGGCGGGGTCTCCCAGACCCCCTCTTACTTGAGCTGCAAGTGCGAGGACGAGGTCAAGGGCATCTTCAAGAGGCAGCTTGATGTCTTCGTCAAGAAGAACGTGGATTTCATGATTGCAGAGtACTTTGAGCATGTGGAGGAGGCAGAGTGGGCCGTGCAGGTGCTGAAGACCTCAGGCAAGCCAGTGTGTGCCTCTCTTTGTATCGGCCCTGACGGAGACCTCAACGGAGTCAGCCCTGGAGACTGTGCCGTCCGGCTGGTCAAAGCTGGAGCCAATATTGTGGGCATCAACTGTCACTTTGACCCTATGACCTGTGTGAAGACGGTGAAAATGATGAAGGAGGGTGTGGAGAAGGCGGGGCTGAAGGCCCATTACATGGTCCAGCCTCTGGCCTTCCACACCCCTGACTGCAACTGCCAGGGATTCATCGACCTGCCAGAGTTCCCCTTCGgtcTGGAGCCCAGGATTCTGACCAGGTGGGACATGCACAAGTACGCCAGAGAGGCCTTCAACGTTGGCATCCGTTTCATCGGTGGCTGCTGCGGCTTCGAGCCCTACCACATCAGGGCTGTGGCTGAGGAGCTGGCCACAGAAAGAGGCTGCCTGCCCGCTGCCTCAGAGAAGCACGGTAACTGGGGTGCTGGTCTGGAGATGCACACAAAGCCATGGGTCCGTGCCAGggcTCGCCGTGACTACTGGGAGAAGTTGAAGCCAGCATCCGGCCGTCCCAGGTGTCCCTCCATGTCCACCCCTGATAGCTGGGGTGTCACCAAGGGCCATGCCGACCTGATGCAGCACAAAGAAGCCACCAGCCAGGAAGAGCTCAAGCCCCTGTTTGAGAAGGCCAAGGCCAGCCACTGAGCACTCCTTCTggggtaggagagggaggtggagccCCCTGGAGGAAAACCAAAGgagtgTCCCTCGTCTTGTGAGCCATGCTTCCCTGCCCTGGACCCCCACTCTACTGCTTCCTTGGATTCCGCTCCAGACCTGCTTACCCTGCCCTTACTCCCCTTGCCTCAGTTCCTGGTTCCCTGCTACCTGGCCTGCACCCCACCCCCACTCCCTCCCgcttttcaataaataccttagCTACCTTA
>XR_005040449.1
CCACACCCCTCCTTCGGCATATAAAGGCAAACGGGTCATGGTATCAAACCCTCTCCAAATCTAGAGGAAGCCTGTGTTTGAGAAGGAGTGTCTCAAGTACAAGTGCAATCACCAATGATCATGGCACCAGCTGGAGCTAAGAGAAACATTCTGGAGCGCCTGGATGCAGGCGAGATTGTTATTGGGGATGGAGGTTTCGTCTTCGCCCTGGAGAAGAGGGGCTATGTGAAGGCGGGTCCCTGGACTCCTGAGGCTGCCGCCGAGCACCCCGAGGCTGTGAGACAGCTGCACCGAGAATTCCTGCGGGCGGGGTCAAATGTCATGCAGACTTTCACCTTCTACGCCAGCGACGATAAACTGGAGAACAGGGGTAACGCTCAGCGCTTCACTGGCACACAAATCAACGAGGCCGCCTGTGACCTGGCCAGGGAGGTGGCCAATGAGGGTGACGCGATGGTGGCGGGCGGGGTCTCCCAGACCCCCTCTTACTTGAGCTGCAAGTGCGAGGACGAGGTCAAGGGCATCTTCAAGAGGCAGCTTGATGTCTTCGTCAAGAAGAACGTGGATTTCATGATTGCAGAGtACTTTGAGCATGTGGAGGAGGCAGAGTGGGCCGTGCAGGTGCTGAAGACCTCAGGCAAGCCAGTGTGTGCCTCTCTTTGTATCGGCCCTGACGGAGACCTCAACGGAGTCAGCCCTGGAGACTGTGCCGTCCGGCTGGTCAAAGCTGGAGCCAATATTGTGGGCATCAACTGTCACTTTGACCCTATGACCTGTGTGAAGACGGTGAAAATGATGAAGGAGGGTGTGGAGAAGGCGGGGCTGAAGGCCCATTACATGGTCCAGCCTCTGGCCTTCCACACCCCTGACTGCAACTGCCAGGGATTCATCGACCTGCCAGAGTTCCCCTTCGgtcTGGAGCCCAGGATTCTGACCAGGTGGGACATGCACAAGTACGCCAGAGAGGCCTTCAACGTTGGCATCCGTTTCATCGGTGGCTGCTGCGGCTTCGAGCCCTACCACATCAGGGCTGTGGCTGAGGAGCTGGCCACAGAAAGAGGCTGCCTGCCCGCTGCCTCAGAGAAGCACGGTAACTGGGGTGCTGGTCTGGAGATGCACACAAAGCCATGGGTCCGTGCCAGggcTCGCCGTGACTACTGGGAGAAGTTGAAGCCAGCATCCGGCCGTCCCAGGTGTCCCTCCATGTCCACCCCTGATAGCTGGGGTGTCACCAAGGGCCATGCCGACCTGATGCAGCACAAAGAAGCCACCAGCCAGGAAGAGCTCAAGCCCCTGTTTGAGAAGGCCAAGGCCAGCCACTGAGCACTCCTTCTggggtaggagagggaggtggagccCCCTGGAGGAAAACCAAAGgagtggtgtgctagAGGCGGAGCAGATcaccaccagctgcaacctgttccatgaTCAAggcctctacaaatactcagccctgccacttccacactTCCCTCGTCTTGTGAGCCATGCTTCCCTGCCCTGGACCCCCACTCTACTGCTTCCTTGGATTCCGCTCCAGACCTGCTTACCCTGCCCTTACTCCCCTTGCCTCAGTTCCTGGTTCCCTGCTACCTGGCCTGCACCCCACCCCCACTCCCTCCCgcttttcaataaataccttagCTACCTTA
>XM_021590680.2
CCACACCCCTCCTTCGGCATATAAAGGCAAACGGGTCATGGTATCAAACCCTCTCCAAATCTAGAGGAAGCCTGTGTTTGAGAAGGAGTGTCTCAAGTACAAGTGCAATCACCAATGATCATGGCACCAGCTGGAGCTAAGAGAAACATTCTGGAGCGCCTGGATGCAGGCGAGATTGTTATTGGGGATGGAGGTTTCGTCTTCGCCCTGGAGAAGAGGGGCTATGTGAAGGCGGGTCCCTGGACTCCTGAGGCTGCCGCCGAGCACCCCGAGGCTGTGAGACAGCTGCACCGAGAATTCCTGCGGGCGGGGTCAAATGTCATGCAGACTTTCACCTTCTACGCCAGCGACGATAAACTGGAGAACAGGGGTAACGCTCAGCGCTTCACTGGCACACAAATCAACGAGGCCGCCTGTGACCTGGCCAGGGAGGTGGCCAATGAGGGTGACGCGATGGTGGCGGGCGGGGTCTCCCAGACCCCCTCTTACTTGAGCTGCAAGTGCGAGGACGAGGTCAAGGGCATCTTCAAGAGGCAGCTTGATGTCTTCGTCAAGAAGAACGTGGATTTCATGATTGCAGAGtACTTTGAGCATGTGGAGGAGGCAGAGTGGGCCGTGCAGGTGCTGAAGACCTCAGGCAAGCCAGTGTGTGCCTCTCTTTGTATCGGCCCTGACGGAGACCTCAACGGAGTCAGCCCTGGAGACTGTGCCGTCCGGCTGGTCAAAGCTGGAGCCAATATTGTGGGCATCAACTGTCACTTTGACCCTATGACCTGTGTGAAGACGGTGAAAATGATGAAGGAGGGTGTGGAGAAGGCGGGGCTGAAGGCCCATTACATGGTCCAGCCTCTGGCCTTCCACACCCCTGACTGCAACTGCCAGGGATTCATCGACCTGCCAGAGTTCCCCTTCGgtcTGGAGCCCAGGATTCTGACCAGGTGGGACATGCACAAGTACGCCAGAGAGGCCTTCAACGTTGGCATCCGTTTCATCGGTGGCTGCTGCGGCTTCGAGCCCTACCACATCAGGGCTGTGGCTGAGGAGCTGGCCACAGAAAGAGGCTGCCTGCCCGCTGCCTCAGAGAAGCACGGTAACTGGGGTGCTGGTCTGGAGATGCACACAAAGCCATGGGTCCGTGCCAGggcTCGCCGTGACTACTGGGAGAAGTTGAAGCCAGCATCCGGCCGTCCCAGGTGTCCCTCCATGTCCACCCCTGATAGCTGGGGTGTCACCAAGGGCCATGCCGACCTGATGCAGCACAAAGAAGCCACCAGCCAGGAAGAGCTCAAGCCCCTGTTTGAGAAGGCCAAGGCCAGCCACTGAGCACTCCTTCTggggtaggagagggaggtggagccCCCTGGAGGAAAACCAAAGgagtggtgtgttgtggtttgaTAAAGGCAGAGGGGAGAACTCTCACACATTCCCTTTTTAAAGAAGTTTACATATCAAAAATAATTAGATGGAAGTCTTATTGTTCTGTTTTGATTTCTAGGACCATCTTCTTGTGAACCAAAAGTTATTCTTATGATTTCATTCAGATTTGCAGCATCTCTAGATGGTATAGCTCCATTGTATTCTCTTCTGTAATAATTCTAAAGTGATTATGGTATATATGCATCTAATTTCTAAATAACTGGATTTCAAACTTGATATGTGCCTTGCTCAAATATAATGTGACAGCAATCATCGAGCCATTGATACGTACTGTGAGTTAAACAAACCAAAACGTTGCCCCCGGTGGTGTGTCCCACATACCTCCAGAGTGTGCTGCTGATCTTGTGACTATTGAAACGCATAAGATTAGAAATAAAAGTGAAAGCGTGTTACCGACACTACTGTGACCACAATATTAAATAGCTGGTAAAGAATGTAGCATAGCCTAGTTACATCTAGTGCCCAGAAAATATCTATACCAAATGAAAGTTGACTTCATAACTGTAGTTTGATGCAATAAACTTCCACTTGACCTTGTA

Function

symbol description
bhmt Predicted to enable betaine-homocysteine S-methyltransferase activity. Acts upstream of or within digestive system development and type B pancreatic cell development. Predicted to be located in cytoplasm. Is expressed in hepatocyte; liver; yolk; and yolk syncytial layer. Orthologous to several human genes including BHMT (betaine--homocysteine S-methyltransferase).

NR:

description
betaine--homocysteine S-methyltransferase 1

GO:

id name namespace
GO:0009086 methionine biosynthetic process biological_process
GO:0032259 methylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0047150 betaine-homocysteine S-methyltransferase activity molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0008898 S-adenosylmethionine-homocysteine S-methyltransferase activity molecular_function

KEGG:

id description
K00544 BHMT; betaine-homocysteine S-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005040448.1 False 1565 mRNA 0.58 9 13165540 13171705
XR_005040449.1 False 1655 mRNA 0.58 10 13165540 13171705
XM_021590680.2 True 1979 mRNA 0.51 8 13166567 13171705

Neighbor

gene id symbol gene type direction distance location
LOC110509662 LOC106563046 coding downstream 15065 13091654 ~ 13150475 (-)
trnag-ccc-7 NA coding downstream 163481 13001989 ~ 13002059 (-)
LOC110509659 LOC106563050 coding downstream 163698 12982130 ~ 13001842 (-)
LOC110509658 LOC106563051 coding downstream 379509 12781844 ~ 12786031 (-)
LOC110509362 NA coding downstream 438578 12726130 ~ 12726962 (-)
LOC118945314 NA coding upstream 63954 13235659 ~ 13236134 (-)
LOC110509325 LOC106563096 coding upstream 168296 13340001 ~ 13345828 (-)
LOC110511055 LOC106563043 coding upstream 176261 13347966 ~ 13366093 (-)
LOC110509326 LOC106563036 coding upstream 368033 13539738 ~ 13633839 (-)
LOC110509672 LOC106563037 coding upstream 462272 13633977 ~ 13643719 (-)
G2153749 NA non-coding downstream 3950 13161289 ~ 13161590 (-)
G2153729 NA non-coding downstream 48404 13107008 ~ 13117136 (-)
G2153676 NA non-coding downstream 139769 13025563 ~ 13025771 (-)
G2153672 NA non-coding downstream 146007 13018084 ~ 13019533 (-)
G2153670 NA non-coding downstream 148686 13016463 ~ 13016854 (-)
G2153753 NA non-coding upstream 1315 13173020 ~ 13173427 (-)
G2153765 NA non-coding upstream 16893 13188598 ~ 13188834 (-)
G2154017 NA non-coding upstream 27475 13199180 ~ 13199412 (-)
G2154018 NA non-coding upstream 27804 13199509 ~ 13199963 (-)
G2154020 NA non-coding upstream 30086 13201791 ~ 13202016 (-)
G2153683 NA other downstream 74184 13087453 ~ 13091356 (-)
G2153174 NA other downstream 516045 12649176 ~ 12649495 (-)
atg10 atg10 other downstream 1221387 11940630 ~ 11945825 (-)
G2152107 NA other downstream 1443061 11722072 ~ 11722479 (-)
LOC110509625 LOC106568355 other downstream 1640388 11456618 ~ 11525214 (-)
G2154361 LOC106563107 other upstream 557128 13728833 ~ 13731096 (-)
G2154418 LOC106563033 other upstream 608954 13780659 ~ 13782254 (-)
G2154637 NA other upstream 828820 14000525 ~ 14010167 (-)
cdc26 cdc26 other upstream 856620 14028310 ~ 14030112 (-)
si:ch211-202f5.3 LOC106563025 other upstream 882549 14054254 ~ 14056905 (-)

Expression


Co-expression Network