LOC110509665


Basic Information

Item Value
gene id LOC110509665
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 13226407 ~ 13230321 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110509665
AAAACACTATGCCCAAGGTAAGGAAAGCACTATACCCGAGGTAAGGAAAACACTATGCCCAAGGTAAGGAAAGCACTATACCCAAGGTAAGGAAAGCACTATGCCCAAGGTAAGGAAAGCACTATGCCCAAGGTAAGGAAAGCACTATGCCCAAGGTAAGGAAAGCACTATGCCCAAGGTAAGGAAAGCACTATGCCCAAGGTAAGGAAAGCACTATGCCCAAGGTAAGGAAAGCACTATGCCCAAGGTAAGGAAAGCACTATGCCCAAGGTAAGGAAAGCACTATGCCCAAGGTAAGGAAAACACTATGCCCACTGCTAGTATAACTCTGTACTCCAACTCCTCACAGCAGCTGTTAATGtaaactccccctctctctgctccaatACGGAACAGCACATTAAAAACGAATTCATCTCCTATTCATtcagctctctcacacaccctgAGACAGCTTAGTATTGTATTTCGCCCCCTAGTGGTATCAGGAGAATACTGACAGTCAGGAAATCTGCACTGCAGGCAGAGGTGGCCAGATGCAGAAATCTTCTCCACCAAGCTCCACCAAGTTCCACCTGGTTTTGCTCCAGCCCTGCAGTAGAACACCGGATTCAACTGATCAAGTCCTTAATGGAGACTTTGATTGGTGGCTCAATTGAATCGACATTGTGCAGGCGTTTCTATTCCTTGAAATTGTAAGTTTAACCATATAACCCTATGGATCCCTCTCTAAACCCAGGTGGATAGGAGACAGAAGGAGGGATAACGTAGACATCGCTAACGTGACAGAGGACATTGGGGTGTTGGCTGTGGCTGGACCAAAGACTAGAGATGTTCTACAGAAAGTCACTCAGGAGGACATGAgtggctcctgagtggtgcagtggtctaaggcactgcaactcagtgcaagaggcgttactacagtccctggttcaaatctaggctgtatcacatccagccgtgattgggagtcctatagggaggtgcacaattggcccagagtcgtcctgttttggccgggcgATGCAGGCCTCAAGTTACTCCACTGCAAACCCCTTCAACTGGCTGGCATCAACCTCAGAGCTACCAGGATCTCctacacagGCGAGTTGGGCTGGGAGCTCTATCTACCTCCGAAGGACATGGCAGCGGTGTACCATGCTATCATGAAAGCAGGACAGGATGAGGGAATCGACAACTTTGATGAACTTTGACACCAACCCTCTGGAAGCTGGTCTGGACTACTTCATCAATCTCAACAAGCCTGCAGAATTCATCGGTAAGACAGCACTGCAGGAGATCAAAGCTAAAGGTCTGAAGAGGAAGCTGTCGACGGGACCATCTGGCTCAACGGCAaggTGGTTGGCAACACTACATCAGGGACCTACAGCTACACCACCCAGAGGAGTCTGGCATTTGCCTATCTGCCAGTGGAGCTGTGTCCTGTGGGGCAgagggtggaggtggagatgTTGGGGAGGACATACCCTGCCATGGTAGTCTAGGAGCCACTGGTCTTCACTTAACCCACCAAGAACCGGCTGCAGAAGAAGGTTAAGATTAAGGCCTACACACGGGGggagttagggggggggggggaacccaGCTTAGAACCAGAGTACCAGATCTGGATCCAAATAGGATATCTGTTTTCTTTCAAGTATTTACAGAAAAGGTGTGCTTTATTTAGCTACCTTCTGGTGCTAATTGCGACCCAGGTCCGTTTAGAATCTCCAAACAGAAGAACTGACACTATGAACTATGCTGGTTGACAGTGTTACTGTTATGATTATGGTGACTTATGATGAAAACGACTGACATGTGATGAACAAtactcaaatgacaccctatacccTGTGTGGCCCAAAGTAGTgcacactatacagggaatatggcATCATTTGAGATGGAGACTTTGACAGTGATGTAAAAAAGACATTAAAAATGACTTCCTCTTTCCTATTTGGTCACCTGGTTAGGAAGAAGCAGGAACAACTAAAGTAACCCAGAATATGCATAAGAGCTCAACTCTAGGTTCCAATGTCCATACTAGCATGGACGGATTGTTTGGTTGGAGTCTTGAAACCATTCAACCCATAACTGCTTAGCAACAGAGGCAATCATTACTGATAGGTGGCActtcatttttaccagcatgtcacctgtgcaactagagacaaaaaaaaaaaaaaactctagatcacctttactccacacaaagAAACGCATACAAGTTCTTTCCtcaccctccctttggcaaatcataCCATAAATCTACCCTGCTGatccctgcttacaagcaaaaactcaaaacaggaagtaccagtgatgcgctcaatacggaagtggtccgacTAAGCGgatactaagctacaggactgttttgctggcACAGTGGAatgtgttccgggattcatccgataacattgaggaatttaccacatcagtcaccggctttatTAAAAAGTACATTGACAATGTTGTTCCCACAGTGACAGCACGTACATCCCCCAACCacaagtcatggattacaggctccctggcatccaggacctctataccaggcggtgtcagagaaaggccccaaaaattatcaaacactccagccacccaagccatagactattctctctgctaccttaCGGCTAGTgataccagtgcaccaagtctggaatcaacaggaccctgaacagcttttatccgaaagccataagactgataaacaACTGGTTTagagctaatcaaatggctatccagacCTGCATTGACAAAACGCATACACATGCATAATGACGCCACAAATACACACAgctgctactgtctatctatcctgttgccttgtcactttacctatacagtgctttcagaaagtattcacaccccttgacattttccacaatttgttgcaTGACAGCCTgcatctaaaatggattaaattgacatttttggtCACGAACATAAACATATTTCCTCTTTGGTATTATGTGTGtcaatttttttattaaaaacttaaatatcacatttacataaatattaatatcctttacacagtactttgttgatgcacctttggcagcaattacagccttgagtcttcttgggtatgacgc
>TU2462654
ACTGACACTATGAACTATGCTGGTTGACAGTGTTACTGTTATGATTATGGTGACTTATGATGAAAACGACTGACATGTGATGAACAAtactcaaatgacaccctatacccTGTGTGGCCCAAAGTAGTgcacactatacagggaatatggcATCATTTGAGATGGAGACTTTGACAGTGATGTAAAAAAGACATTAAAAATGACTTCCTCTTTCCTATTTGGTCACCTGGTTAGGAAGAAGCAGGAACAACTAAAGTAACCCAGAATATGCATAAGAGCTCAACTCTAGGTTCCAATGTCCATACTAGCATGGACGGATTGTTTGGTTGGAGTCTTGAAACCATTCAACCCATAACTGCTTAGCAACAGAGGCAATCATTACTGATAGGTGGCActtcatttttaccagcatgtcacctgtgcaactagagacaaaaaaaaaaaaaaactctagatcacctttactccacacaaagAAACGCATACAAGTTCTTTCCtcaccctccctttggcaaatcataCCATAAATCTACCCTGCTGatccctgcttacaagcaaaaactcaaaacaggaagtaccagtgatgcgctcaatacggaagtggtccgacTAAGCGgatactaagctacaggactgttttgctggcACAGTGGAatgtgttccgggattcatccgataacattgaggaatttaccacatcagtcaccggctttatTAAAAAGTACATTGACAATGTTGTTCCCACAGTGACAGCACGTACATCCCCCAACCacaagtcatggattacaggctccctggcatccaggacctctataccaggcggtgtcagagaaaggccccaaaaattatcaaacactccagccacccaagccatagactattctctctgctaccttaCGGCTAGTgataccagtgcaccaagtctggaatcaacaggaccctgaacagcttttatccgaaagccataagactgataaacaACTGGTTTagagctaatcaaatggctatccagacCTGCATTGACAAAACGCATACACATGCATAATGACGCCACAAATACACACAgctgctactgtctatctatcctgttgccttgtcactttacctatacagtgctttcagaaagtattcacaccccttgacattttccacaatttgttgcaTGACAGC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110509665 False 3113 mRNA 0.43 6 13226407 13230321
TU2462654 True 1170 lncRNA 0.43 1 13228957 13230126

Neighbor

gene id symbol gene type direction distance location
LOC110509661 LOC106563047 coding upstream 138236 13018053 ~ 13088171 (+)
LOC110509656 NA coding upstream 781086 12438582 ~ 12445321 (+)
atp6v1b2 LOC106563054 coding upstream 831839 12377064 ~ 12394568 (+)
dusp11 dusp11 coding upstream 854060 12365542 ~ 12372347 (+)
tcf7l1a LOC106563056 coding upstream 872935 12328752 ~ 12353472 (+)
arsb arsb coding downstream 4150 13234471 ~ 13259942 (+)
LOC110509667 LOC106563044 coding downstream 32345 13262666 ~ 13336582 (+)
LOC110509669 LOC106563041 coding downstream 146981 13377302 ~ 13442767 (+)
LOC110509670 tbca coding downstream 252785 13483106 ~ 13493733 (+)
LOC110509671 LOC106563039 coding downstream 268149 13498470 ~ 13504029 (+)
G2153767 NA non-coding upstream 35044 13191072 ~ 13191363 (+)
G2153583 NA non-coding upstream 44889 13181087 ~ 13181518 (+)
G2153582 bhmt non-coding upstream 56277 13167486 ~ 13170130 (+)
G2153550 NA non-coding upstream 59001 13166427 ~ 13167406 (+)
G2153543 LOC106563046 non-coding upstream 132519 13091689 ~ 13093888 (+)
G2153986 NA non-coding downstream 365314 13595635 ~ 13596456 (+)
G2154008 NA non-coding downstream 405482 13635803 ~ 13636156 (+)
G2154296 NA non-coding downstream 439460 13669781 ~ 13670032 (+)
G2154299 NA non-coding downstream 441729 13672050 ~ 13672876 (+)
G2153316 NA other upstream 465917 12759880 ~ 12760490 (+)
G2152639 NA other upstream 918969 12300792 ~ 12307438 (+)
G2152150 NA other upstream 1460056 11764224 ~ 11766351 (+)
G2151555 NA other upstream 1859915 11359557 ~ 11432252 (+)
G2150729 NA other upstream 2764187 10461753 ~ 10462220 (+)
G2154294 NA other downstream 437968 13668289 ~ 13669170 (+)
G2154391 NA other downstream 542387 13772708 ~ 13776134 (+)
G2154438 NA other downstream 575692 13806013 ~ 13813970 (+)
G2154512 NA other downstream 702927 13915670 ~ 13935819 (+)
G2155696 NA other downstream 1788306 15018627 ~ 15093949 (+)

Expression


Co-expression Network