Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110509667 |
| gene name | LOC106563044 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048593.1 |
| NCBI id | CM023247.2 |
| chromosome length | 47748341 |
| location | 13262666 ~ 13336582 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| lipoma HMGIC fusion partner-like 2 protein |
| id | description |
|---|---|
| K23893 | LHFPL; LHFPL tetraspan subfamily member protein |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021590682.2 | False | 7129 | mRNA | 0.46 | 4 | 13262666 | 13336582 |
| XM_021590684.2 | True | 7052 | mRNA | 0.46 | 3 | 13262666 | 13336582 |
13,240,000
13,250,000
13,260,000
13,270,000
13,280,000
13,290,000
13,300,000
13,310,000
13,320,000
13,330,000
13,340,000
13,350,000
13,360,000
13,370,000
13,380,000
13,390,000
NC_048593.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| arsb | arsb | coding | upstream | 2724 | 13234471 ~ 13259942 (+) |
| LOC110509665 | NA | coding | upstream | 32345 | 13226407 ~ 13230321 (+) |
| LOC110509661 | LOC106563047 | coding | upstream | 174495 | 13018053 ~ 13088171 (+) |
| LOC110509656 | NA | coding | upstream | 817345 | 12438582 ~ 12445321 (+) |
| atp6v1b2 | LOC106563054 | coding | upstream | 868098 | 12377064 ~ 12394568 (+) |
| LOC110509669 | LOC106563041 | coding | downstream | 40720 | 13377302 ~ 13442767 (+) |
| LOC110509670 | tbca | coding | downstream | 146524 | 13483106 ~ 13493733 (+) |
| LOC110509671 | LOC106563039 | coding | downstream | 161888 | 13498470 ~ 13504029 (+) |
| crf-bp | crf-bp | coding | downstream | 341931 | 13678513 ~ 13697486 (+) |
| LOC110509673 | LOC106563107 | coding | downstream | 392230 | 13728812 ~ 13731111 (+) |
| G2153767 | NA | non-coding | upstream | 71303 | 13191072 ~ 13191363 (+) |
| G2153583 | NA | non-coding | upstream | 81148 | 13181087 ~ 13181518 (+) |
| G2153582 | bhmt | non-coding | upstream | 92536 | 13167486 ~ 13170130 (+) |
| G2153550 | NA | non-coding | upstream | 95260 | 13166427 ~ 13167406 (+) |
| G2153986 | NA | non-coding | downstream | 259053 | 13595635 ~ 13596456 (+) |
| G2154008 | NA | non-coding | downstream | 299221 | 13635803 ~ 13636156 (+) |
| G2154296 | NA | non-coding | downstream | 333199 | 13669781 ~ 13670032 (+) |
| G2154299 | NA | non-coding | downstream | 335468 | 13672050 ~ 13672876 (+) |
| G2153316 | NA | other | upstream | 502176 | 12759880 ~ 12760490 (+) |
| G2152639 | NA | other | upstream | 955228 | 12300792 ~ 12307438 (+) |
| G2152150 | NA | other | upstream | 1496315 | 11764224 ~ 11766351 (+) |
| G2151555 | NA | other | upstream | 1896174 | 11359557 ~ 11432252 (+) |
| G2150729 | NA | other | upstream | 2800446 | 10461753 ~ 10462220 (+) |
| G2154294 | NA | other | downstream | 331707 | 13668289 ~ 13669170 (+) |
| G2154391 | NA | other | downstream | 436126 | 13772708 ~ 13776134 (+) |
| G2154438 | NA | other | downstream | 469431 | 13806013 ~ 13813970 (+) |
| G2154512 | NA | other | downstream | 596666 | 13915670 ~ 13935819 (+) |
| G2155696 | NA | other | downstream | 1682045 | 15018627 ~ 15093949 (+) |
