LOC110509669 (LOC106563041)


Basic Information

Item Value
gene id LOC110509669
gene name LOC106563041
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 13377302 ~ 13442767 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036967340.1
ACGAACGTACCCAACTCATACTTCCGGTACTGCGTGGATAAGGGGAAAAAGTTGCACGTTCAGGACTAAGTTTTATTTTGCGCTTCTAATTGGCATCATCAAACTGTTAACGACTGGGATTTTGTTTCCGATAGTTTTACTTTATACAGTAAATAATTCTGTACATTTGTGAAACGTCAAATGTTGAGCATGTCGACGAACAACTTGTCGTACAACGACCAAGGAGGATCGGATTCAGCGGTGGAGGTTGGTCAGGAGACTACCCCGACCTCCTCCAATGCTGGAGCTGGATTTGGCCTGTTCAGCACCAACTTTAAAAAGAATGATGACCTTAAAGAGATGCTGGAGAGCAATAAGGACTCACTCAAACTGGACGCCATGAAGAGGATCATTGCGCTGATCGCCAAGGGGAAGAATGCCTCCGAGCTGTTCCCAGCTGTGGTGAAGAACGTGGCCAGTAAGAACATAGAGctgAAGAAGTTGGTCTATGTGTACCTGGTGAGGTATGCAGAGGAGCAGCAGGACCTGGCTCTACTGTCCATCAGCACCTTTCAGAGGGCCCTCAAGGACCCTAACCAGCTGATCAGAGCCAGTGCTCTGAGGGTTCTGTCCAGTATCAGAGTCCCCATCATCGTTCCCATCATGATGCTGGCCATCAAGGAGGCTGCCTCCGACATGTCCCCTTACGTCAGGAAAACATCCGCCCACGCCATCCAGAAACTctacagCCTGGATCCGGATCAGAAGGAGCACCTGATAGAAGTCATTGATAAATTGCTGAAGGACAAAAGCACTCTGGTAGCGGGCAGCGTGGTGATGGCCTTTGAGGAAGTGTGTCCAGACCGTATTGACCTGATCCATAAGAACTACCGTAAACTCTGCAACCTGCTGGTGGACGTGGAGGAGTGGGGTCAGGTGGTCATCATCACCATGTTGACCCGCTACGCCAGGACGCAGTTCACCAGCCCCTGGAAAGAGgatggtCTGTTTGATGAGAACAGTGAGACGGCGTTCTATGAGTCTGATGAGAAGAAGACGAAAAATGGGGACGAAAAGAAGTCCTACATGATGGACCCCGACCACAGACTGCTTCTGAGGAACACCAAGCCTCTACTACAGAGTAGAAACACTGCCGTGGTGGTGTCAGTAGCTCAGCTGTACTGGCACCTGGCTCCTAAACACGAGGTCGGCGTCATCACCAAGTCACTGGTCAGACTGCTCCGAAGCCACAGaGAGGTGCAGTACGTTGTGTTACAGAACATAGCCACCATGTCTATCCAGAGGAAGGGCATGTTTGAACCTTACATGAAGAGTTTCTATGTGAGATCCACAGATGCCACTCACATCAAATCGCTCAAGCTGGAGATCTTGACCAGCCTGGCCAACGAAGCCAACATCTCAACCATCCTTAGAGAGTTCCAGACTTATGTGAAGAGCCAAGACAAGCAGTTTGCAGCCGGTACCATCCAGGCCATCGGCAGGTGTGCCACCAACATCTCTGAGGTGACAGACACCTGCCTCCAAGGACTGGTGCTGCTGCTCTCCAACCGAGACGAGACGGTGGTGGCTGAGAGCGTGGTGGTCATCAAGAAGCTTCTCCAGACCCAGCCCACCCAGCACAGTGACATCATCAAACACATGGCCAAGCTCTTCGACAACATCGCTGTGCCGATGGCGCGGGCCAGCATCCTGTGGCTGATGGGGGAGTACTGTGAGAGGGTCCCTCAGATCGCCCCCGACGTCCTCCGCAAGATGGCCAAGAGCTTCACCTCCGAGGAGGACATCGTCAAGCTCCAGACTGTCAACCTGGCTGCCAAACTCTACCTCACCAACTCCAAACAGACCAAGTTGTTGACCCAGTACATTTTGAACCTGGGGAAATATGACCAGAACTATGACATCAGAGACCGCACGCGCTTCATCCGCCAGCTCATTGTGCCCAATGAGAAGAGCGGCGCACTCGGCAAGTACGCCCGCCGCATCCTGCTGGCGCCCAAGCCGGCGCCCGTCCTCGAGTCCACATACAAAGACCGTGATCGTTACCAGTTGGGAACGCTGTCCCACACCATCAACACCAAAGCCAGCGGCTACCTGGAGCTCTCTGATTGGCCTGCTGTGGCTCCTGACCAATCAGTGAGGAACGTGGAGGTGATTGAGCCGGTAAAGGAGTGGGCTCCGTCGCTAGGGAAGACTGGAAAGTCCAAGCTGTCCAAGTCATCAGATGATAAGTTCTACTCTGactctggagaggagaaggagaagggctCAGGGAGCAGTAGCAGTGAAGACAGCAGTAGTGAAGagtcaAGCAGTGAGGCGGAGAGCGATGAGGAAAAGAGCAGTAGTCAGAGCAGTGAAGAGTCCGACAAGTCCTCCAGCCAATCAGAGAAGAGTTCCAGTGAGTCCGACTCTGAACAGAAGAAAACAACTAAGAAaccaccacagaagaagacagtCAAACCAACGGCCAAAGACAGTGATTCGGACGAGAACGGGAACGTTGCTAAAGAAACCAGCAGTTCGTCTGCAGAAGAGACCTCGTCTGGTTCCGAATCTGGGTCCGACGCAGACTCCCATTCAGGCACCGAACGCAAGAAGAAAACCAAGTCTAAAGCCAAACCCAAGATGGAGGTGAAGTCAACGAAGGAGGTGTCCTTGTTGAAGGAGGTGTCCCTGTTGGATTTGGACGACTTCACTCCTACACCAGTGACCCGGCCCAAgatgtctgtcctctctcccagccTGCTCGGAGACCTGGAAGGCCTGTCTCTCTCCAACATCTCCTCCACCATACAGGTGAGCGGCCCAGCGTTTGTCCCCGAGAAGAGCCATGACCTGCTGCACCGTATGACTGGTAAAGGTCTGTCAGCCCAGTACCAGTTCCCCAGACAGCCCTGTCTCTACCAGCCCACCATGGTCTCAGTCCAGATCAGCCTGACCAACACCACAGACCACCCTCTGGAACAGATCCACATCGGAGACAGGGACCCCACAGGACTCGACATGCACTGCTTCAATGCTATAGAATGTCTGCTGCCAGAGGCCTCGGTGACTGTGTCTTTGGGCGTCGACTTCAACGACTCAACACAAGCAGCCAACTTCCAGCTGTGTACGAAGGAGGACCAGTTCAGTGTGTCCATCCAGCCTGCCGTAGGAGAACTCTTCCTACCCGCCACCATGACCGAACAGGACTTCCGCAAGGAGCAAGGGAAACTGCTGGGCATGAACGAGAGCTCGGCAACCATCACCATGGCAGCAGAGAACACGACCCGCCAACCAATCAGCAGACAGGTGGCAACCGTGGCCAACCTGGGAGTGGTTCCATCCGGTCAAGACAACATCcacagGTTTGCTGGTAAGACGGCCAGTAGTGGAGCTCTGGTGCTGGTGACAGTGGAGCTGAGGGAGTTGTCTGCAGCTCTGATCACCATCAACACAGAGAAGAGTGTCATGGGCCCCATGCTGCTCCGAGACCTGAAACGTGCCCTGGCCCGGGCCTAGAGCGCCCCCTAGCCCCAGTCCTCCAACACACAGAGAAAAACACCGCTGCCATGATGACATCTCCATCTCATTCATccaaaaacacacatgcacaatgtctttctctctcccgatGTCTCATTTTCTTCCTCTCTTGCATTCTGTCACACACATACCCACTTACATGCAGGCAAGGAGATCTCAGAACGGCTCcagaaacgttttttttttctgttATTGCTTAGAGAAAAGCACTCCTAGATTCCTTATAGCCTTATTTAAATGCTGTTATTGGAATTTGAAGCGTTTCAAGAGCCAAAAGCCAAGATGAATGAACTACCATGATGCTATATAGTGTATGACATTGATATAAACAAGATAGTGCTTTTCTTTTTAGCtgaaggtagcctagcggttagagcgtttggCTACTAACCAAAAGGCCGCTGGTTGTCATACCCCaagccaacaaggtgaaaaatatTTGATGTGCCCTTAACCCTGATTTGCTCCTAGggcgccgtactactatggctgaccctgtaaaacaacacatttcacccCACCTATCTGGTGTGACAAAATTTCAAAAATCCCACTGTTACTGTGCCTCATCCATTCCAAACCCTACTGTTGTTTTCAACGGAGCAACGCCTGTGAAGTGCCTTTATAAATGAAGaaagctatgtttttttttttagggaaCCAAAAATGTGTTTATCAATCATTTGAGGTCTGTATCACTATTGGTGAAAAGAACTGAGTTTATTAAAATGGTTAAGTGAACGGACA

Function

NR:

description
AP-3 complex subunit beta-1-like

GO: NA

KEGG:

id description
K12397 AP3B; AP-3 complex subunit beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036967340.1 True 4272 mRNA 0.51 27 13377302 13442767

Neighbor

gene id symbol gene type direction distance location
LOC110509667 LOC106563044 coding upstream 40720 13262666 ~ 13336582 (+)
arsb arsb coding upstream 117360 13234471 ~ 13259942 (+)
LOC110509665 NA coding upstream 146981 13226407 ~ 13230321 (+)
LOC110509661 LOC106563047 coding upstream 289131 13018053 ~ 13088171 (+)
LOC110509656 NA coding upstream 931981 12438582 ~ 12445321 (+)
LOC110509670 tbca coding downstream 40339 13483106 ~ 13493733 (+)
LOC110509671 LOC106563039 coding downstream 55703 13498470 ~ 13504029 (+)
crf-bp crf-bp coding downstream 235746 13678513 ~ 13697486 (+)
LOC110509673 LOC106563107 coding downstream 286045 13728812 ~ 13731111 (+)
LOC110509676 NA coding downstream 302646 13745413 ~ 13747459 (+)
G2153767 NA non-coding upstream 185939 13191072 ~ 13191363 (+)
G2153583 NA non-coding upstream 195784 13181087 ~ 13181518 (+)
G2153582 bhmt non-coding upstream 207172 13167486 ~ 13170130 (+)
G2153550 NA non-coding upstream 209896 13166427 ~ 13167406 (+)
G2153986 NA non-coding downstream 152868 13595635 ~ 13596456 (+)
G2154008 NA non-coding downstream 193036 13635803 ~ 13636156 (+)
G2154296 NA non-coding downstream 227014 13669781 ~ 13670032 (+)
G2154299 NA non-coding downstream 229283 13672050 ~ 13672876 (+)
G2153316 NA other upstream 616812 12759880 ~ 12760490 (+)
G2152639 NA other upstream 1069864 12300792 ~ 12307438 (+)
G2152150 NA other upstream 1610951 11764224 ~ 11766351 (+)
G2151555 NA other upstream 2010810 11359557 ~ 11432252 (+)
G2150729 NA other upstream 2915082 10461753 ~ 10462220 (+)
G2154294 NA other downstream 225522 13668289 ~ 13669170 (+)
G2154391 NA other downstream 329941 13772708 ~ 13776134 (+)
G2154438 NA other downstream 363246 13806013 ~ 13813970 (+)
G2154512 NA other downstream 490481 13915670 ~ 13935819 (+)
G2155696 NA other downstream 1575860 15018627 ~ 15093949 (+)

Expression


Co-expression Network