LOC110509670 (tbca)


Basic Information

Item Value
gene id LOC110509670
gene name tbca
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 13483106 ~ 13493733 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590687.2
CCACCTCCTCTCCCGCGGTATACAGTGCGCATGCCCAGGATCTCATGAGCGATATTGTTGTGCTGGATAGCAACCGTTTCACAGTATTTCAGTAAACTAGTACTTTATTGTGTCGTTTAAGAATATCAGTTAACATGGCAGATCCAAGAATACGACAGATTAAAATCAAGACTGGCGTTGTTAAGCGTCTGGTGAAGGAGAAGGTCATGTACGTCAAGGAGACCAGGCAGCAGGAGGAGAAGATTGAACGACTGAAAGCAGAGGCCTGCGACGAAGAGGCCGACTCAGAGGCCAAGTATGTCATCAAGAAACAGCTGGAGGTGCTACAGGAGTCCAAGATGATGATTCCAGACTGTCACAGGCGTCTGACCATAGCACACGCAGACCTGTCCCAGATACTAGAAACGGAAGAGGACTTGGCTGAAGCAGCGGAGTACAAAGAGGCCAGGACCGTATTGGATTCAGTGAAGCTTGAAGGATGATGCTCTCACTCTCTAATGCGTCACTTAGATGTCCATTCCGTTCGTCTGGGCTTGTTTGGAATCATAGACAAACAGAATCGTTCAGCACTTTTTTTCTCGCTCTTTTTTTGAAacttaaaaaactttttttttttacttatttctACAGTTTGAGAACAACGTGTTGTCTGATCTTGACATCCTTCTCTGGAGTGCACACTCTCACACAAGCATCAAATGAACACTTCTTTCTGTTCTTACCACGGTGGATTTGCTTGGCTTCTACCATACAGCTGCAAATGAAGCCTAATTGTGTTGTTTATCTCGTATTCAAGCTATTGTACTTTAGCGTCTTGCATCAAGTGATTTAGAAGTGTTCCTCAATTTGTTGATTTGAGCATAGATTTTTCTTTATGATAACTGATAAAATATTTAGTATGTATGTATTCTCTCATAACAAGCAAGGTGTCACCAGTGAACATAATTATAGAACCAAAGAACCTAACAAGAAGAGTGCTAGCTAAACCGTTATTATATAACAACCATCCTATTGTCTGTGTGGggttggatggagagagatatgtAGCACTGTTTTTGACATGGTTAGTTCTATCTGGGAGCCTTGGGCTGTCCCTACCATAAACCCTAGCCCCTTATTTTATACCGTGTGTTATCTTAACCATAAACCATGTTCAATTTCATCTTCAATGGTGTAAGGATGGCCCAAGGATCCCAGACAGCACGGACCGTTTTGGCATGATGCCTGTTTCAAGACACCAACCTCCGCTGGTCAATAACATCCATGCGGCCTAGTGACATCATCAGCACTGTCATCACCAACTGGACATAGCCTGTCACATCCACTGTATAAGCATGGGGTACACTTGGACACACTATTTTCAGCCACTAAGATACAGCTACGACCAGAAGGTGATTTTCGTAGCGGGTTTGGAGAGCATTTTCGCTATTTCTTTTCCTAATCTTCATCAAATTATCTTAAGCTGCTATGTTAATTATCTTAACCTTCTGTGTAAGATCTAACACGCAACGAAAAAAATCACTTCTGGTCGTAGCTGTCTCGAAGCGGCGTGAAaatagtgttgttgttttttttcataTAGGCGTAGACTGTTTGCCGAATGACCAGTAAAGCGTAGTTGTTGGGCATCAAATCACTTATTATTTTGGTCCACAAGTGTAGACTTTTAAAAACTATattattaaatattttatttgggTTAACATATATAGTTTTTATGTTCCACTATGGAATTGTCCAAATTGTTTATTTTTACTGGACCATAAAATGTAGGCCTATCCATAGACCAACCAGATAGAGGAAATACCTATGGATTATATAAATACTATTATCCCAAAGGTAAACTAAACTATGCTTGAAGATGTTGTTCAATGTAGGCTATATGTTTTTATAGCCGACAAAACATGTATTAGGTTGTGCTCATGTTAAGCCTGTTAATAACATTGAATATGAATAATAGAATTGATTAAATGTTCAAACAAA
>TU2462796
GCCCAGGATCTCATGAGCGATATTGTTGTGCTGGATAGCAACCGTTTCACAGTATTTCAGTAAACTAGTACTTTATTGTGTCGTTTAAGAATATCAGTTAACATGGCAGATCCAAGAATACGACAGATTAAAATCAAGACTGGCGTTGTTAAGCGTCTGGTGAAGGAGAAGGTCATGTACGTCAAGGAGACCAGGCAGCAGGAGGAGAAGATTGAACGACTGAAAGCAGAGGCCTGCGACGAAGAGGCCGACTCAGAGGCCAAGTATGTCATCAAGAAACAGCTGGAGGTGCTACAGGAGTCCAAGATGATGATTCCAGACTGTCACAGGCGTCTGACCATAGCACACGCAGACCTGTCCCAGATACTAGAAACGGAAGAGGACTTGGCTGAAGCAGCGGAGTACAAAGAGGCCAGGACCGTATTGGATTCAGTGAAGCTTGAAGGATGATGCTCTCACTCTCTAATGCGTCACTTAGATGTCCATTCCGTTCGTCTGGGCTTGTTTGGAATCATAGACAAACAGAATCGTTCAGCACTTTTTTTCTCGCTCTTTTTTTGAAacttaaaaaactttttttttttacttatttctACAGTTTGAGAACAACGTGTTGTCTGATCTTGACATCCTTCTCTGGAGTGCACACTCTCACACAAGCATCAAATGAACACTTCTTTCTGTTCTTACCACGGTGGATTTGCTTGGCTTCTACCATACAGCTGCAAATGAAGCCTAATTGTGTTGTTTATCTCGTATTCAAGCTATTGTACTTTAGCGTCTTGCATCAAGTGATTTAGAAGTGTTCCTCAATTTGTTGATTTGAGCATAGATTTTTCTTTATGATAACTGATAAAATATTTAGTATGTATGTATTCTCTCATAACAAGCAAGGTGTCACCAGTGAACATAATTATAGAACCAAAGAACCTAACAAGAAGAGTGCTAGCTAAACCGTTATTATATAACAACCATCCTATTGTCTGTGTGGggttggatggagagagatatgtAGCACTGTTTTTGACATGGTTAGTTCTATCTGGGAGCCTTGGGCTGTCCCTACCATAAACCCTAGCCCCTTATTTTATACCGTGTGTTATCTTAACCATAAACCATGTTCAATTTCATCTTCAATGGTGTAAGGATGGCCCAAGGATCCCAGACAGCACGGACCGTTTTGGCATGATGCCTGTTTCAAGACACCAACCTCCGCTGGTCAATAACATCCATGCGGCCTAGTGACATCATCAGCACTGTCATCACCAACTGGACATAGCCTGTCACATCCACTGTATAAGCATGGGGTACACTTGGACACACTATTTTCAGCCACTAAGATACAGCTACGACCAGAAGGTGATTTTCGTAGCGGGTTTGGAGAGCATTTTCGCTATTTCTTTTCCTAATCTTCATCAAATTATCTTAAGCTGCTATGTTAATTATCTTAACCTTCTGTGTAAGATCTAACACGCAACGAAAAAAATCACTTCTGGTCGTAGCTGTCTCGAAGCGGCGTGAAaatagtgttgttgttttttttcataTAGGCGTAGACTGTTTGCCGAATGACCAGTAAAGCGTAGTTGTTGGGCATCAAATCACTTATTATTTTGGTCCACAAGTGTAGACTTTTAAAAACTATattattaaatattttatttgggTTAACATATATAGTTTTTATGTTCCACTATGGAATTGTCCAAATTGTTTATTTTTACTGGACCATAAAATGTAGGCCTATCCATAGACCAACCAGATAGAGGAAATACCTATGGATTATATAAATACTATTATCCCAAAGGTAAACTAAACTATGCTTGAAGATGTTGTTCAATGTAGGCTATATGTTTTTATAGCCGACAAAACATGTATTAGGTTGTGCTCATGTTAAGCCTGTTAATAACATTGAATATGAATAATAGAATTGA

Function

symbol description
tbca Predicted to enable tubulin binding activity. Predicted to be involved in protein folding and tubulin complex assembly. Predicted to act upstream of or within post-chaperonin tubulin folding pathway. Predicted to be located in cytoplasm and microtubule. Predicted to be active in cytosol and microtubule cytoskeleton. Orthologous to human TBCA (tubulin folding cofactor A).

NR:

description
tubulin-specific chaperone A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590687.2 False 1983 mRNA 0.40 4 13483106 13493733
TU2462796 True 1934 lncRNA 0.40 4 13483138 13493716

Neighbor

gene id symbol gene type direction distance location
LOC110509669 LOC106563041 coding upstream 40339 13377302 ~ 13442767 (+)
LOC110509667 LOC106563044 coding upstream 146524 13262666 ~ 13336582 (+)
arsb arsb coding upstream 223164 13234471 ~ 13259942 (+)
LOC110509665 NA coding upstream 252785 13226407 ~ 13230321 (+)
LOC110509661 LOC106563047 coding upstream 394935 13018053 ~ 13088171 (+)
LOC110509671 LOC106563039 coding downstream 4737 13498470 ~ 13504029 (+)
crf-bp crf-bp coding downstream 184780 13678513 ~ 13697486 (+)
LOC110509673 LOC106563107 coding downstream 235079 13728812 ~ 13731111 (+)
LOC110509676 NA coding downstream 251680 13745413 ~ 13747459 (+)
LOC110509678 LOC106563033 coding downstream 285666 13779399 ~ 13782705 (+)
G2153767 NA non-coding upstream 291743 13191072 ~ 13191363 (+)
G2153583 NA non-coding upstream 301588 13181087 ~ 13181518 (+)
G2153582 bhmt non-coding upstream 312976 13167486 ~ 13170130 (+)
G2153550 NA non-coding upstream 315700 13166427 ~ 13167406 (+)
G2153986 NA non-coding downstream 101902 13595635 ~ 13596456 (+)
G2154008 NA non-coding downstream 142070 13635803 ~ 13636156 (+)
G2154296 NA non-coding downstream 176048 13669781 ~ 13670032 (+)
G2154299 NA non-coding downstream 178317 13672050 ~ 13672876 (+)
G2154300 NA non-coding downstream 179172 13672905 ~ 13673127 (+)
G2153316 NA other upstream 722616 12759880 ~ 12760490 (+)
G2152639 NA other upstream 1175668 12300792 ~ 12307438 (+)
G2152150 NA other upstream 1716755 11764224 ~ 11766351 (+)
G2151555 NA other upstream 2116614 11359557 ~ 11432252 (+)
G2150729 NA other upstream 3020886 10461753 ~ 10462220 (+)
G2154294 NA other downstream 174556 13668289 ~ 13669170 (+)
G2154391 NA other downstream 278975 13772708 ~ 13776134 (+)
G2154438 NA other downstream 312280 13806013 ~ 13813970 (+)
G2154512 NA other downstream 439515 13915670 ~ 13935819 (+)
G2155696 NA other downstream 1524894 15018627 ~ 15093949 (+)

Expression


Co-expression Network