Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110509671 |
| gene name | LOC106563039 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048593.1 |
| NCBI id | CM023247.2 |
| chromosome length | 47748341 |
| location | 13498470 ~ 13504029 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| homeobox protein orthopedia B-like isoform X3 |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| GO:0000976 | transcription regulatory region sequence-specific DNA binding | molecular_function |
| id | description |
|---|---|
| K24901 | OTP; homeobox protein orthopedia |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021590690.2 | False | 2086 | mRNA | 0.47 | 3 | 13498470 | 13504029 |
| XM_021590688.2 | False | 2124 | mRNA | 0.47 | 3 | 13498471 | 13504029 |
| XM_021590691.2 | False | 2059 | mRNA | 0.47 | 3 | 13498476 | 13504029 |
| XM_021590689.2 | False | 2094 | mRNA | 0.47 | 3 | 13498480 | 13504029 |
| XM_021590692.2 | True | 2230 | mRNA | 0.46 | 3 | 13498749 | 13504029 |
13,492,000
13,493,000
13,494,000
13,495,000
13,496,000
13,497,000
13,498,000
13,499,000
13,500,000
13,501,000
13,502,000
13,503,000
13,504,000
13,505,000
13,506,000
13,507,000
NC_048593.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110509670 | tbca | coding | upstream | 4737 | 13483106 ~ 13493733 (+) |
| LOC110509669 | LOC106563041 | coding | upstream | 55703 | 13377302 ~ 13442767 (+) |
| LOC110509667 | LOC106563044 | coding | upstream | 161888 | 13262666 ~ 13336582 (+) |
| arsb | arsb | coding | upstream | 238528 | 13234471 ~ 13259942 (+) |
| LOC110509665 | NA | coding | upstream | 268149 | 13226407 ~ 13230321 (+) |
| crf-bp | crf-bp | coding | downstream | 174484 | 13678513 ~ 13697486 (+) |
| LOC110509673 | LOC106563107 | coding | downstream | 224783 | 13728812 ~ 13731111 (+) |
| LOC110509676 | NA | coding | downstream | 241384 | 13745413 ~ 13747459 (+) |
| LOC110509678 | LOC106563033 | coding | downstream | 275370 | 13779399 ~ 13782705 (+) |
| LOC110509328 | LOC106563105 | coding | downstream | 436158 | 13940187 ~ 13942428 (+) |
| G2153767 | NA | non-coding | upstream | 307107 | 13191072 ~ 13191363 (+) |
| G2153583 | NA | non-coding | upstream | 316952 | 13181087 ~ 13181518 (+) |
| G2153582 | bhmt | non-coding | upstream | 328340 | 13167486 ~ 13170130 (+) |
| G2153986 | NA | non-coding | downstream | 91606 | 13595635 ~ 13596456 (+) |
| G2154008 | NA | non-coding | downstream | 131774 | 13635803 ~ 13636156 (+) |
| G2154296 | NA | non-coding | downstream | 165752 | 13669781 ~ 13670032 (+) |
| G2154299 | NA | non-coding | downstream | 168021 | 13672050 ~ 13672876 (+) |
| G2154300 | NA | non-coding | downstream | 168876 | 13672905 ~ 13673127 (+) |
| G2153316 | NA | other | upstream | 737980 | 12759880 ~ 12760490 (+) |
| G2152639 | NA | other | upstream | 1191032 | 12300792 ~ 12307438 (+) |
| G2152150 | NA | other | upstream | 1732119 | 11764224 ~ 11766351 (+) |
| G2151555 | NA | other | upstream | 2131978 | 11359557 ~ 11432252 (+) |
| G2150729 | NA | other | upstream | 3036250 | 10461753 ~ 10462220 (+) |
| G2154294 | NA | other | downstream | 164260 | 13668289 ~ 13669170 (+) |
| G2154391 | NA | other | downstream | 268679 | 13772708 ~ 13776134 (+) |
| G2154438 | NA | other | downstream | 301984 | 13806013 ~ 13813970 (+) |
| G2154512 | NA | other | downstream | 429219 | 13915670 ~ 13935819 (+) |
| G2155696 | NA | other | downstream | 1514598 | 15018627 ~ 15093949 (+) |
