LOC110509672 (LOC106563037)


Basic Information

Item Value
gene id LOC110509672
gene name LOC106563037
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 13633977 ~ 13643719 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590693.2
CGTAATACGTATAAAAAATAGAGGCCATGGTCGAAGTGGATTGTAAACACATCAACTGTACCAATTGTAACTCTCTTTATTATCAACAAAACATGTGGTCGGATGtgtcagcaatgcagggtggttACAAGATGTTTATGTTCAACTTTCAGGTTGATATTCTCGGCGGAGAGAAAGGAGGGCGAGCGTCCAAGCGAGGAATACAAACGAATCGCTGGGAGTATGGCGACAAATGGAGAGGAGGcgagtggaggagaggatgggtcGGAGTCCGATGTGGCTGAGCTTCGCCAGAAAGTAGAGTCGCTACAGAAGCAACTGAAAAACTGCAGAAAAGAACTGACCACATTACAGAAACAACTGACCACATTACAGAAACAACTGAGCAAGTCTGAGAGGCTTCAGAAGAACACAGAAGGCTACAACGAAGACTTGAGGAAACAGGTCGACAGGCTGAGTACAGAGATTCATGAACGGAAGACAAAGGCGAAAGAGAAAGCTGAAGCTGAGACACAGACAGCAGAATATACCTGGTCAGAAACTGAttattacaactactactatgGAGGAGGCTACTACCACGGTGATGGTGTGGCAACAGACACCGAGGGGATTGTGGTAGCAGAGGGGCAGGAAGCCACTGATGCCTCAGAGATGACAGCTGCAGAATCAACCAATGACCCCGAAACATATATGATTACAGATACAATGACAGCCACAGAGACAGTTACAGAAGTGTCTCTGGagggtggtgttactgctgctcAACCAGGGCAAGAGGTGGATGCAGGCTCTATAGCTGACATGCTGAGAGCCACTGCTGAGCAGGCCATGACACAGACTGGCTTTGTGTTTGATGAGGCCACCGGGATGTACTACGACCACAGCACTGGCTTCTACTACGACTCGGCCAGTCAGTTGTACTATGATAACAACACAGGGATGTACTACTACTACGATGCAGAGAGTGGCAAGTACCAGTTCCACTCCAGGATAGAGGTCCCTACTGTACAGCCTGTCTCAGAGACCAGCCAGGAGAAAAGGAGCCTGGACAAGAAGGGCAGGAAGTGGAAGAAAGTTCCAGAGAGAGCCTCTCGTCAGGAGGATAAGGGCCTTGTAAAGGAGCTCGAGTTTGAGGAGTGGATCGAGCGGCGAATCCCCAAGAGGGGAGTGGCCTCGCGCAGGCAAAGGGGGCGGTCTGTCACTCCAGACACTCCTCCACAGAAGAAAAGCTCTTCAAAGACTCGCCGGGCAAAGAGCGCCGAACGCTTgctgaagaggaagaagaggaatgACTGGTCGCGCTCTGATGATGCGAGCAGCTCAAGGAGGAAGAAGGCTAAGTCGGACAGACTGGGCAGCAAGGAGGAGGCAGCTGCGTCAGGATGTGATGGCTTGCGTGGGAACAGCGAGCCTGAGGAGGGGGAGATCACCGAATCGGAGGGAGAATGGAAGTctacttcctcctcttcttccccccctcttcGCACCAAATACAGCTCAGAGTCAGAGATGGAGAGTCAggaagTTGCTGAGGAGGTGTGGCCGCCCTGTGTGAGGGTGACAGTGGTCAGATCTCCTGTGTTACAGACAGGAACACTCTTCATCATCACAGCTGACTCTCCAGCCACCATTGGCAGGGAAAAGGATATGAACCATGCCATCAGATTATCTGAAATGGGAGTCAGTAAGTTTCATGCAGAGGTGTACTTTGACCAGGACCAACAGTGCTACATGCTAGTGGACCAGGGAAGCCAGAATGGAACTGTCCTCAATGGCAACCGAATCCTTCAGCCCAAAGCAAAGTGTGACCCTTGCCCTCTGACCCATGGGGATGAAGTGAAGATGGGAGAGACTGTTCTCTCCTTCCACATCCACTCTGGTACAGACACCTGTGACGGCTGTGAACCTGGACAGGTCATGGCTCACCTCGGCAAACACCAGAGAAACCAGCCTGAACAGACAGGTCCAGCTCCAACCAAAGAGGACAAGGAGCTGCTCAGACAGAAAGAACTGAAACAGATGAAGGTCAAATATGGCCTGAAGAGCACTGAGTATGAGGAGACCAAAGCCCTGAGGAACCCCAGGTATGTTGACAGGGCCGAGTCTCGTCGTCAGACTGTGGGCAGCGAGGGAGCCTTCCAACGTGACGACGCACCCGCCTCCGTTCACATTGAGATCAGTGAAGTCAACAAGGGAAGGAAGATGCTGGAGAAGATGGGCTGGAAGAAAGGAGAAGGCCTGGGCAAAGATGGAGCTGGAATGAAAGACCCGATCCAGCTGAAGATCCGGAAGTCCCAGTCAGGTCTTGGGGCGGGAGCTGCTGTGTCGGTGGACGAGGCTGGGTCTCTGAGCAAGAACAAGACCCAGAGAAACTGGGAGAAGGCCAGAGAGAGGTTTAATGACACCTGCCAGCCAGATACACCCACAGTCAAGAAGGAGCAGGGCCTGGTAACCAAACCTTGGGTTAAAGGAGAAGTGACTGAATGACATCCTAGGCCAATGTTTCTCAACAGTTCTAATCTGTATCTCAGAAAGGCCGGTCACACAATCCACCATGGAGAAGTGAGTAGATgactggacacagacacacagggtggCCTAGTTCCAATATATTTACTGACTGAATACACTTCTTGGAATGAGAATGGTGCTGGTACTCACTTAGATGTTATTCCAACTTGCACTAAAGTGGGATATCTCTTATGTTTGCAGTCCCTTCAGAACTGTGCACTGTTAGGAATGGGCTGTTAGGAATGGGCTAAGGGCGGAAGCAGAATTGGGTATTGTATGTTAAATTGTAAAGAATTAACATGCTAAATAACCTCCTTGTAAAGCAACTGTTTGTGGGCTACCTGCGGAATCTATCAACTGTACAATCATGCCTAATAAATGTTGCTTTGATTTTGTCTGCA
>XM_021590694.2
CGTAATACGTATAAAAAATAGAGGCCATGGTCGAAGTGGATTGTAAACACATCAACTGTACCAATTGTAACTCTCTTTATTATCAACAAAACATGTGGTCGGATGtgtcagcaatgcagggtggttACAAGATGTTTATGTTCAACTTTCAGGTTGATATTCTCGGCGGAGAGAAAGGAGGGCGAGCGTCCAAGCGAGGAATACAAACGAATCGCTGGGAGTATGGCGACAAATGGAGAGGAGGcgagtggaggagaggatgggtcGGAGTCCGATGTGGCTGAGCTTCGCCAGAAAGTAGAGTCGCTACAGAAGCAACTGAAAAACTGCAGAAAAGAACTGACCACATTACAGAAACAACTGACCACATTACAGAAACAACTGAGCAAGTCTGAGAGGCTTCAGAAGAACACAGAAGGCTACAACGAAGACTTGAGGAAACAGGTCGACAGGCTGAGTACAGAGATTCATGAACGGAAGACAAAGGCGAAAGAGAAAGCTGAAGCTGAGACACAGACAGCAGAATATACCTGGTCAGAAACTGAttattacaactactactatgGAGGAGGCTACTACCACGGTGATGGTGTGGCAACAGACACCGAGGGGATTGTGGTAGCAGAGGGGCAGGAAGCCACTGATGCCTCAGAGATGACAGCTGCAGAATCAACCAATGACCCCGAAACATATATGATTACAGATACAATGACAGCCACAGAGACAGTTACAGAAGTGTCTCTGGagggtggtgttactgctgctcAACCAGGGCAAGAGGTGGATGCAGGCTCTATAGCTGACATGCTGAGAGCCACTGCTGAGCAGGCCATGACACAGACTGGCTTTGTGTTTGATGAGGCCACCGGGATGTACTACGACCACAGCACTGGCTTCTACTACGACTCGGCCAGTCAGTTGTACTATGATAACAACACAGGGATGTACTACTACTACGATGCAGAGAGTGGCAAGTACCAGTTCCACTCCAGGATAGAGGTCCCTACTGTACAGCCTGTCTCAGAGACCAGCCAGGAGAAAAGGAGCCTGGACAAGAAGGGCAGGAAGTGGAAGAAAGTTCCAGAGAGAGCCTCTCGTCAGGAGGATAAGGGCCTTGTAAAGGAGCTCGAGTTTGAGGAGTGGATCGAGCGGCGAATCCCCAAGAGGGGAGTGGCCTCGCGCAGGCAAAGGGGGCGGTCTGTCACTCCAGACACTCCTCCACAGAAGAAAAGCTCTTCAAAGACTCGCCGGGCAAAGAGCGCCGAACGCTTgctgaagaggaagaagaggaatgACTGGTCGCGCTCTGATGATGCGAGCAGCTCAAGGAGGAAGAAGGCTAAGTCGGACAGACTGGGCAGCAAGGAGGAGGCAGCTGCGTCAGGATGTGATGGCTTGCGTGGGAACAGCGAGCCTGAGGAGGGGGAGATCACCGAATCGGAGGGAGAATGGAAGTctacttcctcctcttcttccccccctcttcGCACCAAATACAGCTCAGAGTCAGAGATGGAGAGTCAggaagTTGCTGAGGAGGTGTGGCCGCCCTGTGTGAGGGTGACAGTGGTCAGATCTCCTGTGTTACAGACAGGAACACTCTTCATCATCACAGCTGACTCTCCAGCCACCATTGGCAGGGAAAAGGATATGAACCATGCCATCAGATTATCTGAAATGGGAGTCAGTAAGGACCAACAGTGCTACATGCTAGTGGACCAGGGAAGCCAGAATGGAACTGTCCTCAATGGCAACCGAATCCTTCAGCCCAAAGCAAAGTGTGACCCTTGCCCTCTGACCCATGGGGATGAAGTGAAGATGGGAGAGACTGTTCTCTCCTTCCACATCCACTCTGGTACAGACACCTGTGACGGCTGTGAACCTGGACAGGTCATGGCTCACCTCGGCAAACACCAGAGAAACCAGCCTGAACAGACAGGTCCAGCTCCAACCAAAGAGGACAAGGAGCTGCTCAGACAGAAAGAACTGAAACAGATGAAGGTCAAATATGGCCTGAAGAGCACTGAGTATGAGGAGACCAAAGCCCTGAGGAACCCCAGGTATGTTGACAGGGCCGAGTCTCGTCGTCAGACTGTGGGCAGCGAGGGAGCCTTCCAACGTGACGACGCACCCGCCTCCGTTCACATTGAGATCAGTGAAGTCAACAAGGGAAGGAAGATGCTGGAGAAGATGGGCTGGAAGAAAGGAGAAGGCCTGGGCAAAGATGGAGCTGGAATGAAAGACCCGATCCAGCTGAAGATCCGGAAGTCCCAGTCAGGTCTTGGGGCGGGAGCTGCTGTGTCGGTGGACGAGGCTGGGTCTCTGAGCAAGAACAAGACCCAGAGAAACTGGGAGAAGGCCAGAGAGAGGTTTAATGACACCTGCCAGCCAGATACACCCACAGTCAAGAAGGAGCAGGGCCTGGTAACCAAACCTTGGGTTAAAGGAGAAGTGACTGAATGACATCCTAGGCCAATGTTTCTCAACAGTTCTAATCTGTATCTCAGAAAGGCCGGTCACACAATCCACCATGGAGAAGTGAGTAGATgactggacacagacacacagggtggCCTAGTTCCAATATATTTACTGACTGAATACACTTCTTGGAATGAGAATGGTGCTGGTACTCACTTAGATGTTATTCCAACTTGCACTAAAGTGGGATATCTCTTATGTTTGCAGTCCCTTCAGAACTGTGCACTGTTAGGAATGGGCTGTTAGGAATGGGCTAAGGGCGGAAGCAGAATTGGGTATTGTATGTTAAATTGTAAAGAATTAACATGCTAAATAACCTCCTTGTAAAGCAACTGTTTGTGGGCTACCTGCGGAATCTATCAACTGTACAATCATGCCTAATAAATGTTGCTTTGATTTTGTCTGCA
>XM_021590695.2
CTGTTGTACCGTAGAAGAAGAAAGTGACGTAATACGTATAAAAAATAGAGGCCATGGTCGAAGTGGATTGTAAACACATCAACTGTACCAATTGTTGATATTCTCGGCGGAGAGAAAGGAGGGCGAGCGTCCAAGCGAGGAATACAAACGAATCGCTGGGAGTATGGCGACAAATGGAGAGGAGGcgagtggaggagaggatgggtcGGAGTCCGATGTGGCTGAGCTTCGCCAGAAAGTAGAGTCGCTACAGAAGCAACTGAAAAACTGCAGAAAAGAACTGACCACATTACAGAAACAACTGACCACATTACAGAAACAACTGAGCAAGTCTGAGAGGCTTCAGAAGAACACAGAAGGCTACAACGAAGACTTGAGGAAACAGGTCGACAGGCTGAGTACAGAGATTCATGAACGGAAGACAAAGGCGAAAGAGAAAGCTGAAGCTGAGACACAGACAGCAGAATATACCTGGTCAGAAACTGAttattacaactactactatgGAGGAGGCTACTACCACGGTGATGGTGTGGCAACAGACACCGAGGGGATTGTGGTAGCAGAGGGGCAGGAAGCCACTGATGCCTCAGAGATGACAGCTGCAGAATCAACCAATGACCCCGAAACATATATGATTACAGATACAATGACAGCCACAGAGACAGTTACAGAAGTGTCTCTGGagggtggtgttactgctgctcAACCAGGGCAAGAGGTGGATGCAGGCTCTATAGCTGACATGCTGAGAGCCACTGCTGAGCAGGCCATGACACAGACTGGCTTTGTGTTTGATGAGGCCACCGGGATGTACTACGACCACAGCACTGGCTTCTACTACGACTCGGCCAGTCAGTTGTACTATGATAACAACACAGGGATGTACTACTACTACGATGCAGAGAGTGGCAAGTACCAGTTCCACTCCAGGATAGAGGTCCCTACTGTACAGCCTGTCTCAGAGACCAGCCAGGAGAAAAGGAGCCTGGACAAGAAGGGCAGGAAGTGGAAGAAAGTTCCAGAGAGAGCCTCTCGTCAGGAGGATAAGGGCCTTGTAAAGGAGCTCGAGTTTGAGGAGTGGATCGAGCGGCGAATCCCCAAGAGGGGAGTGGCCTCGCGCAGGCAAAGGGGGCGGTCTGTCACTCCAGACACTCCTCCACAGAAGAAAAGCTCTTCAAAGACTCGCCGGGCAAAGAGCGCCGAACGCTTgctgaagaggaagaagaggaatgACTGGTCGCGCTCTGATGATGCGAGCAGCTCAAGGAGGAAGAAGGCTAAGTCGGACAGACTGGGCAGCAAGGAGGAGGCAGCTGCGTCAGGATGTGATGGCTTGCGTGGGAACAGCGAGCCTGAGGAGGGGGAGATCACCGAATCGGAGGGAGAATGGAAGTctacttcctcctcttcttccccccctcttcGCACCAAATACAGCTCAGAGTCAGAGATGGAGAGTCAggaagTTGCTGAGGAGGTGTGGCCGCCCTGTGTGAGGGTGACAGTGGTCAGATCTCCTGTGTTACAGACAGGAACACTCTTCATCATCACAGCTGACTCTCCAGCCACCATTGGCAGGGAAAAGGATATGAACCATGCCATCAGATTATCTGAAATGGGAGTCAGTAAGTTTCATGCAGAGGTGTACTTTGACCAGGACCAACAGTGCTACATGCTAGTGGACCAGGGAAGCCAGAATGGAACTGTCCTCAATGGCAACCGAATCCTTCAGCCCAAAGCAAAGTGTGACCCTTGCCCTCTGACCCATGGGGATGAAGTGAAGATGGGAGAGACTGTTCTCTCCTTCCACATCCACTCTGGTACAGACACCTGTGACGGCTGTGAACCTGGACAGGTCATGGCTCACCTCGGCAAACACCAGAGAAACCAGCCTGAACAGACAGGTCCAGCTCCAACCAAAGAGGACAAGGAGCTGCTCAGACAGAAAGAACTGAAACAGATGAAGGTCAAATATGGCCTGAAGAGCACTGAGTATGAGGAGACCAAAGCCCTGAGGAACCCCAGGTATGTTGACAGGGCCGAGTCTCGTCGTCAGACTGTGGGCAGCGAGGGAGCCTTCCAACGTGACGACGCACCCGCCTCCGTTCACATTGAGATCAGTGAAGTCAACAAGGGAAGGAAGATGCTGGAGAAGATGGGCTGGAAGAAAGGAGAAGGCCTGGGCAAAGATGGAGCTGGAATGAAAGACCCGATCCAGCTGAAGATCCGGAAGTCCCAGTCAGGTCTTGGGGCGGGAGCTGCTGTGTCGGTGGACGAGGCTGGGTCTCTGAGCAAGAACAAGACCCAGAGAAACTGGGAGAAGGCCAGAGAGAGGTTTAATGACACCTGCCAGCCAGATACACCCACAGTCAAGAAGGAGCAGGGCCTGGTAACCAAACCTTGGGTTAAAGGAGAAGTGACTGAATGACATCCTAGGCCAATGTTTCTCAACAGTTCTAATCTGTATCTCAGAAAGGCCGGTCACACAATCCACCATGGAGAAGTGAGTAGATgactggacacagacacacagggtggCCTAGTTCCAATATATTTACTGACTGAATACACTTCTTGGAATGAGAATGGTGCTGGTACTCACTTAGATGTTATTCCAACTTGCACTAAAGTGGGATATCTCTTATGTTTGCAGTCCCTTCAGAACTGTGCACTGTTAGGAATGGGCTGTTAGGAATGGGCTAAGGGCGGAAGCAGAATTGGGTATTGTATGTTAAATTGTAAAGAATTAACATGCTAAATAACCTCCTTGTAAAGCAACTGTTTGTGGGCTACCTGCGGAATCTATCAACTGTACAATCATGCCTAATAAATGTTGCTTTGATTTTGTCTGCA

Function

NR:

description
angiogenic factor with G patch and FHA domains 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590693.2 False 2915 mRNA 0.50 15 13633977 13643692
XM_021590694.2 False 2888 mRNA 0.50 15 13633977 13643692
XM_021590695.2 True 2856 mRNA 0.51 16 13633977 13643719

Neighbor

gene id symbol gene type direction distance location
LOC110509326 LOC106563036 coding downstream 138 13539738 ~ 13633839 (-)
LOC110511055 LOC106563043 coding downstream 267884 13347966 ~ 13366093 (-)
LOC110509325 LOC106563096 coding downstream 288149 13340001 ~ 13345828 (-)
LOC118945314 NA coding downstream 397843 13235659 ~ 13236134 (-)
LOC110509664 bhmt coding downstream 462272 13165540 ~ 13171705 (-)
LOC118945261 NA coding upstream 78533 13722252 ~ 13727337 (-)
f2rl1.2 par2 coding upstream 98818 13742537 ~ 13745324 (-)
LOC110509675 par-2 coding upstream 104016 13747735 ~ 13752187 (-)
LOC110509677 LOC106563034 coding upstream 110056 13753775 ~ 13757521 (-)
LOC110509327 LOC106563032 coding upstream 163688 13807407 ~ 13869870 (-)
G2154177 NA non-coding downstream 80337 13489024 ~ 13553640 (-)
G2154028 arsb non-coding downstream 375170 13245159 ~ 13258807 (-)
G2154030 NA non-coding downstream 396246 13235313 ~ 13237731 (-)
G2154024 NA non-coding downstream 403641 13228570 ~ 13230336 (-)
G2154023 NA non-coding downstream 406013 13226949 ~ 13227964 (-)
G2154288 NA non-coding upstream 20005 13663724 ~ 13664017 (-)
G2154373 NA non-coding upstream 96323 13740042 ~ 13740337 (-)
G2154409 NA non-coding upstream 116872 13760591 ~ 13760919 (-)
G2154404 NA non-coding upstream 130023 13773742 ~ 13774229 (-)
G2154419 NA non-coding upstream 139614 13783333 ~ 13783782 (-)
G2153683 NA other downstream 542621 13087453 ~ 13091356 (-)
G2153174 NA other downstream 984482 12649176 ~ 12649495 (-)
atg10 atg10 other downstream 1689824 11940630 ~ 11945825 (-)
G2152107 NA other downstream 1911498 11722072 ~ 11722479 (-)
LOC110509625 LOC106568355 other downstream 2108825 11456618 ~ 11525214 (-)
G2154361 LOC106563107 other upstream 85114 13728833 ~ 13731096 (-)
G2154418 LOC106563033 other upstream 136940 13780659 ~ 13782254 (-)
G2154637 NA other upstream 356806 14000525 ~ 14010167 (-)
cdc26 cdc26 other upstream 384606 14028310 ~ 14030112 (-)
si:ch211-202f5.3 LOC106563025 other upstream 410535 14054254 ~ 14056905 (-)

Expression


Co-expression Network