LOC110509673 (LOC106563107)


Basic Information

Item Value
gene id LOC110509673
gene name LOC106563107
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 13728812 ~ 13731111 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590696.2
CCAACCTAATTTGGCACTACGGCACCAGATTATTTGCCTTTTGCAGAAAAACAAACATTACAGCTGGAAGTATCTTTGCCATTCTTGTGGAGTCTGTTGCAACCAACCCAGATAATAAATGAATCCTCTGAGACTATTAGACTTTAGTTGGGACACAGTGAGTGCAGGCGGTTTGTTCAGCGGTGTGTCTCTCCCCTGGATGTCTCACCTGACCGTGGCTAACCTGACCCTGGGTCTGGGGCTCCCGGAGCAGTCCGTCCTTCAGCCGGCGTGGGACTACCTCCTGCAGCACCACCAGGCTGAGCTGCGGAGCCCTTTGTTCCCTGtggtcatctctgtctctacctaccTTCTCCTGGTGACCCTCTACACCCTGCTAGACCTCCTGGCCCCCAGCTGGCCAGCCCTCAACAGCTACAAGCTCCACCCAGACAGACCCGTCACCTGGGACAACATCTGGACCACCCTGTATCTCACAGCCTACAACCACCTGGTCTATATCTTCCCTGCTGCTGTGGGCCAGTGGCTGTGGAGGCCTCCTATCCCGCTCCCCCGTGACGCACCCACTCTAATGAGCTTCCTCCTGGGCATCCTGGGGTGCATGGTGGTCTTTGACTTCCAGTTCTATCTTTGGCATCTTCTACACCACAGAGTCCCATGGCTGTACCGCACCTTCCACGCCATGCACCACCAGTACCTTCAGCCCTTTAGCCTGGTTACCCAGTACGTGTCCGCCTGGGAGCTGATCAGCTCGGGCTTCTGGACCACTGTGGACCCCCTCCTGCTGCAGTGCCACTGCCTGACCGCTTGGGGCTTCATGGTGTTCACCATCTGTGTGTCCACTGAGGACCACTGTGGCTACGACTTCCCCTGGTCGCTGCACCGCCTGGTGCCCTTCGGCCTGTGGGGCGGACCCCCCAAACACGACGCTCACCACCGGATGCCCGGGACAAACTTTGCCCCGTTCTTCTCCCACTGGGACTGGCTGGGGGGGACTAACATGGTGCCCACCCCCTCCAAAGATAGATATGTTGAGGAAGGTCTGAAAGGGAGGAAGGATAAAGGAGCTTGAGTGttgctttttttctctctcctccctctcccttgaccgctttttgtgtgtatttcatccaatctctctcccttccttactctatctcttctgtctttctctctgtccacacctctctctctctctctctctctctctctctctctctcgctcttcaccTTTTCCATCTTTCTTTGTGTTCATGAAATGTAATGACTTTACACTAACTGCGCTCTGTAGCTCTCTGTCAGATCTCTGGTTTTGTACGATATTGATTTGTTTGGGGTTGCTCTGTGGGTTTTTTTCATTGGTTTCCATGGCATTCTCAGGTCAGACTTCCCTGCatttgaaatgtgtgtgttttactaATACCGCTAATAATCCATGCTGACTGGAGTTGTACATTTTTGCTACGTTTTTTTGCTATTGACATTTTCCTATGTTTCTCTGTTTTGAACTCTTTTTGAATAATTTCTTTGGGGGTAAATCCTATGACTGGATAACCTGATGTAGTATAACTGTTGGTAGATGAGAGACATGTAAACATAAGACTGCACAGATGTTTTATAGGTATTTTAATAACTCATGTAGTATTTTTggaaaatgtgtgttttgttgaaAATAACACAGTTGAAGGATTGCAGCACAGCAATTCAAGCAGGGTAACACAAGGGAAAtccgcgcgcgcgcgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaaccagaaAGCTGAATGGCAGTCTTTTAGCGGTGTCCAGTGGGCCGCCAGAGCGATGCGTGGGGCCAATACTAATTTATCATCCTCTCTTTCAGACACTGTCTATAATCTCTTTGGCAGAGACCTCTACACTGACCCTCCCACGACAAAACACCTTCATTGTGATCCATGATCTTCAGCCTGGGGCCTAAACACAAACAAAAACCAAACACAACTATTTCTCTTTTCAAGCATGTCATTGGCCGAGCATCAAGTATACTTGGTATTCCTAGAGAGTGTGCTTGTGTTCTAATAGATTATTAATATGGGAAACTGCAGAATATTTGTACTGTTGATGATGATTGGAGCAGAGGGTCGGTGAAGAGTTAGAGAGCAGAGTGAAATGTCAGCCGTGTTTTAATCAGATTGTCAAACTATTGTTGGGAAAGGGTCTACAATTTTGGAAATATTAAAGAAATATGAATGTT

Function

NR:

description
cholesterol 25-hydroxylase-like protein 2

GO:

id name namespace
GO:0006633 fatty acid biosynthetic process biological_process
GO:0016126 sterol biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function

KEGG:

id description
K10223 CH25H; cholesterol 25-hydroxylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590696.2 True 2300 mRNA 0.49 1 13728812 13731111

Neighbor

gene id symbol gene type direction distance location
crf-bp crf-bp coding upstream 31326 13678513 ~ 13697486 (+)
LOC110509671 LOC106563039 coding upstream 224783 13498470 ~ 13504029 (+)
LOC110509670 tbca coding upstream 235079 13483106 ~ 13493733 (+)
LOC110509669 LOC106563041 coding upstream 286045 13377302 ~ 13442767 (+)
LOC110509667 LOC106563044 coding upstream 392230 13262666 ~ 13336582 (+)
LOC110509676 NA coding downstream 14302 13745413 ~ 13747459 (+)
LOC110509678 LOC106563033 coding downstream 48288 13779399 ~ 13782705 (+)
LOC110509328 LOC106563105 coding downstream 209076 13940187 ~ 13942428 (+)
LOC110509680 LOC106563031 coding downstream 227522 13958633 ~ 13996453 (+)
atp6v1g1 LOC106563029 coding downstream 269143 14000254 ~ 14010168 (+)
G2154340 NA non-coding upstream 17112 13711493 ~ 13711700 (+)
G2154338 NA non-coding upstream 19455 13709142 ~ 13709357 (+)
G2154312 NA non-coding upstream 39343 13688420 ~ 13689469 (+)
G2154311 NA non-coding upstream 41654 13686106 ~ 13687158 (+)
G2154303 NA non-coding upstream 53597 13675015 ~ 13675215 (+)
G2154379 NA non-coding downstream 21213 13752324 ~ 13752674 (+)
G2154384 NA non-coding downstream 35165 13766276 ~ 13766569 (+)
G2154396 NA non-coding downstream 55404 13786515 ~ 13786715 (+)
G2154512 NA non-coding downstream 184559 13915670 ~ 13935819 (+)
G2154294 NA other upstream 59642 13668289 ~ 13669170 (+)
G2153316 NA other upstream 968322 12759880 ~ 12760490 (+)
G2152639 NA other upstream 1421374 12300792 ~ 12307438 (+)
G2152150 NA other upstream 1962461 11764224 ~ 11766351 (+)
G2151555 NA other upstream 2362320 11359557 ~ 11432252 (+)
G2154391 NA other downstream 41597 13772708 ~ 13776134 (+)
G2154438 NA other downstream 74902 13806013 ~ 13813970 (+)
G2155696 NA other downstream 1287516 15018627 ~ 15093949 (+)
G2157602 NA other downstream 2619606 16350717 ~ 16353665 (+)

Expression


Co-expression Network