LOC110509676


Basic Information

Item Value
gene id LOC110509676
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 13745413 ~ 13747459 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005040354.1
TCCTTCACTAAGCATACAAGTAGTTTCCTTTGGCGTTTACAACATCTCGAGTCTAAACAGGGAAGGTAATCACGTAGCTGAGTAGACCGATACTTTACACGGCTCTTACCTGTTTGGTCATATCTAAGGATCGCAGACTAATCGCAGTTTATTCAATGTAAATCTAATAGGGATGTATAGGGGAGACCGGGGATGGTTGTAACACTTGCAATTACTCCAAGCGGGAGCGAGGTAGAATCCTACTGTTCACATGCTGTTTAGTATTGACGCCTCATGTGAAAAACATTCCTGGATAATGGAAAAGAAAGACAGACCTCTCCACACTTTGGACAAAGCGTCAAAAgcagagtggggggggggaggcCATTCAGGGCCCAAGAAAATTGCAACAAGGGGTAGGAAGAGGAGAAAAACTGTGACTTTTGATGGTGGAAAACTGCTGGAAAGAAGCAAGCCAAGACAAACCACACTGAAACACATTTAAAAAACTGTCCTGCCTAAGAAAAAAGCCAAAACAAAGCAGATTGAACCAGAAAATTCAGATTCTTCCAATGAAGAACACTTCTGCATTTTGTGCACGAGTCCAAGGAGGTCTGGGTGTTGCTGGGAAATCAAATTATGGGCCCACCAAGCCTGTACCCCGGGACAGCCATACATACCACTGTCACAACTGTGACTCTTGATTAAGTGAACATGTCCAACATTGTCACACACAgccacgcacgcaaacacacacgttCAGGTGTTTAATTTAGTCTTGCTGTTTGGTTGAGAACCATTTAGGAGAGTGAAATAATACATATTATTTCTGCCAAACAAAAGGTAAACTTGGCAACGTTGCTCTCATGGTCTCAAAAGCATTCAATAATTAGTTGCATGTCATGATATGCACTTTTTAATTCTGTTACAATTCACCCCATGGTCTGGTTTAGTTGTAACATTTCACTCCTTGTATTTAAGACACCATGCATTGGCAGTTTGATTTACATATATGACCATACCAATTTGTAAAGGACAGATGTTGGTTGTTTGTATCAAGTTCTGAATACACTCCCATAAACAATCGCTGAGAAACAGGGAAGGGTTACAACCATCCCTGGTCTCCCTTACCCATTTCTATATAAATCAGAACTATGCTAATCTGGTATTGGGTCTCTTGGGCATTGCTGCATAAACTAAGTATTCACTATTTCATGTATGCCTGGACTATGTCACTTGAGGCAATTATTTTTAGATGTGTAATTTTTCCACATTGAAGTAAACCCCTTCCACCATTTCTTTATTCTGATTAAATGGGATTTGAGTCAACCAAGTTGAAGAGTGCCATTTCTGCAACATATCTCAGTGTGTAGGCTAAAGTCATATCTCAGTGTGTAGGCTAAAGTCATATCTTAGTGTGTAGGCTAAAGTCACTGACAAAACTATACCGTGCATCATAGCCGCAGGATGTAGGGGTATGAGGGTTCTGCAGCaaatcataaaaataaaaaataaaaatcacacaaaaaaaatgcacTGGACCTTTAAGTCCTTTATTAAACAGACCAATAGAGCTGTCTGCAACGCAGGCAACATAGTTCCCACCCCCAAACTACTCCCTTCCAAGAAAATTGAAATCGCAGCACCCCCCCCATCCCACTTCTCGCAGCTATGCTGTGCATTCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005040354.1 True 1665 mRNA 0.41 3 13745413 13747459

Neighbor

gene id symbol gene type direction distance location
LOC110509673 LOC106563107 coding upstream 14302 13728812 ~ 13731111 (+)
crf-bp crf-bp coding upstream 47927 13678513 ~ 13697486 (+)
LOC110509671 LOC106563039 coding upstream 241384 13498470 ~ 13504029 (+)
LOC110509670 tbca coding upstream 251680 13483106 ~ 13493733 (+)
LOC110509669 LOC106563041 coding upstream 302646 13377302 ~ 13442767 (+)
LOC110509678 LOC106563033 coding downstream 31940 13779399 ~ 13782705 (+)
LOC110509328 LOC106563105 coding downstream 192728 13940187 ~ 13942428 (+)
LOC110509680 LOC106563031 coding downstream 211174 13958633 ~ 13996453 (+)
atp6v1g1 LOC106563029 coding downstream 252795 14000254 ~ 14010168 (+)
slc31a1 LOC106563027 coding downstream 267583 14015042 ~ 14028322 (+)
G2154340 NA non-coding upstream 33713 13711493 ~ 13711700 (+)
G2154338 NA non-coding upstream 36056 13709142 ~ 13709357 (+)
G2154312 NA non-coding upstream 55944 13688420 ~ 13689469 (+)
G2154311 NA non-coding upstream 58255 13686106 ~ 13687158 (+)
G2154303 NA non-coding upstream 70198 13675015 ~ 13675215 (+)
G2154379 NA non-coding downstream 4865 13752324 ~ 13752674 (+)
G2154384 NA non-coding downstream 18817 13766276 ~ 13766569 (+)
G2154396 NA non-coding downstream 39056 13786515 ~ 13786715 (+)
G2154512 NA non-coding downstream 168211 13915670 ~ 13935819 (+)
G2154294 NA other upstream 76243 13668289 ~ 13669170 (+)
G2153316 NA other upstream 984923 12759880 ~ 12760490 (+)
G2152639 NA other upstream 1437975 12300792 ~ 12307438 (+)
G2152150 NA other upstream 1979062 11764224 ~ 11766351 (+)
G2151555 NA other upstream 2378921 11359557 ~ 11432252 (+)
G2154391 NA other downstream 25249 13772708 ~ 13776134 (+)
G2154438 NA other downstream 58554 13806013 ~ 13813970 (+)
G2155696 NA other downstream 1271168 15018627 ~ 15093949 (+)
G2157602 NA other downstream 2603258 16350717 ~ 16353665 (+)

Expression


Co-expression Network