LOC110509678 (LOC106563033)


Basic Information

Item Value
gene id LOC110509678
gene name LOC106563033
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 13779399 ~ 13782705 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590701.2
tggtactgtattttagAAATGCAACGTCTTCAAAAGAGCTCTTTAGGCTCAAACAGGTTGTGGCAGGTTTTTTGTGTGCTGCCAGGATGACATAGCTCAGCCAAATACTTTTCTACAGCCCATTGCTCCGCCTTCCTCTCTCTGGTTTAACTCACTGAGAAAATCTTGATGGAAGTACAGAGAGACTTCTTGACAGAGATGTGACCTGCCCGGACATCAGGAACGATCTGCCCATATTGTCGATACCTAAAGTTGATTATTTCAAAGGACTATCTATCCGGACAAACTCTGGCAATGGGGAAACTTTTGCTATTTTCATTGGTTTCTTTTCTTTTGCTGGATGTGACATTTCAATCCAAAGGGAAAAGGGCCAAGAAATCCAAGTGGAACATCACTGTAAATCCCAGAACATTTAAAGGAAAAATCATACAGTtaaagtctgtctctctccctaatgCCTGCCAACAGACACAACAAGCACCCCATTATTCTGGCCCCCCCACTGCCTCTGCTCCTACCCCTCCGGCGCTGTGGTTGCTAAGCAACGACACAGCGCCGTACCTCGCCGGCCCCCTGAGCAGGTGGGTCATCCCCAGTTTTTACATGCTGGCCATTGTCGTGGGGATCCCGGCCAACATCGCCATCTTGTCCGCCGTGGCCACCGAAGTCAGGCGGGTGTCGTCGGCCATCCTCTACTGCAGCCTGGCCGTCTCcgacctctttctcctcctctccctcgtctTCAAGGCCCACTACCATCTCCACGGCAACCACTGGGTGTTCGGCGAGATTGCCTGCCGCATCGTCACAGCCTGTTTCTACGGCAACCTGTACTGCTCGGCACACACGCTAGCCTGTATTAGCGTCAAACGCTACCTGGCCGTGGTGCGCCCGTTTCTCTACAAGAGCCTCCCCAAGAGGGCCTATACCGCCTGGGCCAGTGTGGTTGTTTGGGGGGTGTTTGGGGCTGCTGTCATACCCGAGCTCCTGGTCCGGCAGAGCTACCACCTCCCTCAGCTAGGCCTCACCACTTGCCATGATGTTCTTCCACTGGACTACAGCTCCCATGCTCCTCTGCTCTACTACAAGCTGGGCCTGACCTTTCTGGGTCTACTAGTCCCGCTGTTGGTCACAGCTGTGTGTTATGCACGGATAGTCCGAGAACTCAACCACTCACACCACGACTGGGCGCTGTATGTCAAGGCTAGCTCGCTGGTGTTTGTGATTTTTGTGGCATGTTTCGGCCCCGCCGGGACCCTCCACTTCCTGCATTATGTGCGTCTGTTGGCGGGTGAAGAGGACAGCTTCTACGGCTACTTCAATGTGGCAGTGTGTCTGTGCTGTCTGCATGCCTGCCTGGacccattcctcttcctccttatGTCCAAATCAACCGGATCCAAACTCCACTTCATGACTCTGAGCATCTCCACCTGAATCTTAATCCGGAACAAAAGTACAAAATAATCCACATTTATTCCATGGTCTTCAAGGGGAAGACCATGAGCATCCCCACCTGAATTTGACGTAACCTGGATTAGAATTTGGACCGCAACATCAGGCCTAAATTTGGATCAGCCACTTCAATCTAGATCTCAACTATGTGACTGACTATCGGAAGATAAGGCCAGAAACTGGATCACAGTTTGAGACAGTTATGGATCTCAGTGAGGTTTCTCATCTCAGATCCAGTTTAATATGTGAAATCGGTTTAGATCTGTGTgtgacttttttttctttttttaacccttattttaccaggtaaattgactgagaacacattctcatttacagcaaagaCATGGGgagtagttacaggggagaggagaggggatgaatgAGTCAATTGGCAATTTGTTGTTGGCAAGTCATAAACGGGACCCTTCggttggaagggagagagagaggaacgtcaACTACTGTATCAATGTTGGGACTCTGAGTAGACCGGACTggaattctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggcctatATATGCCTATTGTATGTGTTGTCTACTTACAAAACctattaaaaatgtttttaaggATACATGTGAAATATTTACATTTGACCAAATAATGTATACATTCCAACATATATTACAGATGTACTTCAAATGTAAACACAGTGGCTTCAgagtattcacacctctttactttttccacattttgttgtgttacaaagtgggattaaaatgtatttaattgtgaATTTTTTTGTCAAAGAtcgacacaaaatactctgtcaataTGGAAGAACAATTCTAAAATGTGTAAAACATTCATGAAAAATAATACACTagtatatcttgattagataagtattcaacccgcTAGGTCAATATGTGTTAGATTCACCTTGGCCacgattatagctgtgagtctttctgggtaagtctctcagagcattccacacctggattgtgcaacattttcatTATCCTTTTCATAATTCTTCAagatctgtcaaattggttgttgatcattgctagacaaccattttcaggtcttgccatagattttcaatgagatttaacctttctagggcaggcgttccgctaacattccg
>TU2463323
TCTTGATGGAAGTACAGAGAGACTTCTTGACAGAGATGTGACCTGCCCGGACATCAGGAACGATCTGCCCATATTGTCGATACCTAAAGTTGATTATTTCAAAGGACTATCTATCCGGACAAACTCTGGCAATGGGGAAACTTTTGCTATTTTCATTGGTTTCTTTTCTTTTGCTGGATGTGACATTTCAATCCAAAGGGAAAAGGGCCAAGAAATCCAAGTGGAACATCACTGTAAATCCCAGAACATTTAAAGGAAAAATCATACAGTtaaagtctgtctctctccctaatgCCTGCCAACAGACACAACAA

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590701.2 False 2606 mRNA 0.46 2 13779399 13782705
TU2463323 True 314 lncRNA 0.41 2 13779562 13780576

Neighbor

gene id symbol gene type direction distance location
LOC110509676 NA coding upstream 31940 13745413 ~ 13747459 (+)
LOC110509673 LOC106563107 coding upstream 48288 13728812 ~ 13731111 (+)
crf-bp crf-bp coding upstream 81913 13678513 ~ 13697486 (+)
LOC110509671 LOC106563039 coding upstream 275370 13498470 ~ 13504029 (+)
LOC110509670 tbca coding upstream 285666 13483106 ~ 13493733 (+)
LOC110509328 LOC106563105 coding downstream 157482 13940187 ~ 13942428 (+)
LOC110509680 LOC106563031 coding downstream 175928 13958633 ~ 13996453 (+)
atp6v1g1 LOC106563029 coding downstream 217549 14000254 ~ 14010168 (+)
slc31a1 LOC106563027 coding downstream 232337 14015042 ~ 14028322 (+)
prpf4 prpf4 coding downstream 252617 14035322 ~ 14041282 (+)
G2154384 NA non-coding upstream 12830 13766276 ~ 13766569 (+)
G2154379 NA non-coding upstream 26725 13752324 ~ 13752674 (+)
G2154340 NA non-coding upstream 67699 13711493 ~ 13711700 (+)
G2154338 NA non-coding upstream 70042 13709142 ~ 13709357 (+)
G2154312 NA non-coding upstream 89930 13688420 ~ 13689469 (+)
G2154396 NA non-coding downstream 3810 13786515 ~ 13786715 (+)
G2154512 NA non-coding downstream 132965 13915670 ~ 13935819 (+)
G2154533 NA non-coding downstream 163764 13946469 ~ 13981651 (+)
G2154564 NA non-coding downstream 230176 14012881 ~ 14013081 (+)
G2154565 NA non-coding downstream 230511 14013216 ~ 14013423 (+)
G2154391 NA other upstream 3265 13772708 ~ 13776134 (+)
G2154294 NA other upstream 110229 13668289 ~ 13669170 (+)
G2153316 NA other upstream 1018909 12759880 ~ 12760490 (+)
G2152639 NA other upstream 1471961 12300792 ~ 12307438 (+)
G2152150 NA other upstream 2013048 11764224 ~ 11766351 (+)
G2154438 NA other downstream 23308 13806013 ~ 13813970 (+)
G2155696 NA other downstream 1235922 15018627 ~ 15093949 (+)
G2157602 NA other downstream 2568012 16350717 ~ 16353665 (+)
G2158499 LOC106563144 other downstream 3406639 17189344 ~ 17191128 (+)

Expression

LOC110509678(LOC106563033) Expression in all Baseline Samples

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LOC110509678(LOC106563033) Expression in each Bioproject

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LOC110509678(LOC106563033) Expression in each Sample
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Co-expression Network