LOC110509680 (LOC106563031)


Basic Information

Item Value
gene id LOC110509680
gene name LOC106563031
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 13958633 ~ 13996453 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036967425.1
ACCCAAGCCCTAACACGCTCCACTCGGGTTCTACAGGCGTGTACATGGTGCTTGGTAGAGCTGTCAGCCGCAATAGAAATACATATCTACTGGTATAGAGCGTTTTTTTTTGTCGCAGTAAAGTAGGGATTACATTACCAAATCAGTTCGAAGATCGACATTCTTTATTTAAACGAGCTACTCGTGTTTTGAGTATTTCAAACGGGTCCGTTTGCCGCTAGAAGAAGCAACATAAAAGGGGCGGGTGCGATTCATTACTGGCTCCAGTCCTGTGCAACACCTCAGCTAATCTGACGTTACAGTCTGGTGAGACATACTGTCACTGAGCCTGCCAGGTGAAGAGCCAATTTGGACGAACACTAGCGATGAAATAATTATTTAGGGCATTTTTATAGCTATATGTGTCTTTCCTAACGCCGAGGTGTCACGCGGGTGATATTGCGCTGTCATTATTTGACTttcgattttttattttttatatctgtATTTATTCCATTGGTTGTTGGATAACATTAGCTTGTTAGCAAgatagctagttaaacaacaatgtcGGATAACCAGAGCTGGAATTCTTCGGGTTCCGATGAAGACGTGGAGACGTCGGAATCGGGAGTCGGGCAGCCAGTTGTTGGTGTCGCCGAGCTCGGTGGAATCATCAGCAAGTGGACTAACTACATCCACGGCTGGCAGGATCGCTGGGTGGTCCTGAAGAACAACACTCTGAGCTACTACAAGTCTCAGGACGAGAGAGAGTTCGGCTGCAGAGGGTCCCTGTGTCTCAGCAAGGCTGTCATCACTcCCCATGAGTTTGACGAGTGCAGGCTGGATGTCAGTGTTAACGACAGTGTGTGGTACCTGAGGGCCACAGACTCAGAACACAGACACCAATGGATCAACTCCATCGAACTACACAGGAGTctaagagaggggaggatagacaGTGGAGTCATCCAGAGGACATCACtagtccctccagcagcagtGTGTTTAATGGCGGAGTCTGGGTATGGGTCAGAACCCAGTCTGAGGAGACATGGCTCCATGCTGTCTCTCACGTCTGCTACCAGCGGCTACTCTGCCACATCCACATCCTCCTTCAAGGGTCACAGCCTGAGAGAGAAGCTGGCGGAAATGGAGACGTTCAGAGACATCCTGTGCAGACAGGTGGACACGCTGCAGAAGTACTTTGACGGCTGCTCCGACGCTGTCTCCAAGGATGAGCTGCAGAGAGACAAAGttgttgaggatgatgaggatgatttCCCCAACACTCGGTCAGACGGAGAGTTCATCCACAACAACAACGGCAGCAAGGAGAAGCTGTTCCGATCTCTGAGCCCTAAGGGCATCAATGGAATAGACTTTAAGGGCGAGGCGATCACGTTTAAGGCCACCACAGCTGGGATTTTGTCCACCCTGTCCCACTGCATCgacctgatggtgaagagagaggacagcTGGCAGAAGCGACTGGACAAGGAGacggaaaagaggaggaggatagaggagggctACCATTCCGCTCTCTCTGAGCTCAAGAAGAAGTCTCACTTTGGAGGGCCTGATTACGAGgagGGGCCTAACAGCCTGATCAATGAGGATGAGTTTTTCGATGCCGTTGAAGCCGCTCTTGACAGACAAGACAAGATGGAGGAACAGTCTCACACCGAGAAGTCGCGGATACAGAGATCCAGTCCAGTTCCCCCGGGAGATGTCTACTCCACCATAGGATCACACAGATTCGCTGACAAGGTGGAGGAGATGGTGCAGAATCACATGACCTACTCGCTGCAGGATATGGGCGGGGACGCCAACTGGCagctggtggtggaggagggggagatgaagGTGTacaggagggaggtagaggagaatGGTATTGTCCTGGACCCCCTGAAGGCCACCCATTCTGTGAAGGGAGTCACGGGACATGAGTTGTGTCACTACTTCTGGGACACGAACGTACGCAACGACTGGGAGACCACCATTGAGAACTTCAACGTTGTGGAGATGTTATCGGACAACGCTGTAATCGTCTATCAGACACACAAGAGGGTGTGGCCTGCATCCCAGAGAGACGTGCTGTACTTGTCTGCTATGAGGAAGATCCTGGCTAACAACGAGAACGACCCAGACACCTGGCTGGTCTGCAACTTCTCTGTGGACCACGACAACGCCCAGCCCACCAACAGGTGTGTTCGTGCCAAAATCAACATTGCCATGATATGCCAGACCCTGGTTAGCCCACCAGAGGGCGACCGAGAGATCAGCAGAGACAACCTTACCTGTAAAATCACCTACGTCGCCAATGTGAACCCAGGAGGCTGGGCTCCTGCCTCAGTTCTGAGGGCTGTGGCCAAGAGGGAGTACCCCAAGTTCCTCAAACGCTTCACCAGCTATGTCCAGGAGAAGACAGCCGGGAAACCTATCCTCTTCTAAGTTTCACAGGACTCGCAGCACCCCTGTCCACACAACAGACTGTTCCGAACATTGTGTATCATTTCAACCCAACTCTAGCTAGCCATCATGCTAAGTGCTAGGGTACAGCTAGGCCTTTTCAGACTAGCTTCCATGCGAGCTCTCTTGCTAGGTCTTCAGCTAGCTTCAATGCTAGTTTCCCATTCTATACCTCATGCTAGCTTCCTATACTAGCTCTCGTGCTAGTTTCCTATGCCAGGTCTTATGCTAGGTCCTTTGCTAATTCTCATGCTAGTTCTTATGCTAGCTCCCATGCTAGTTTCATTAGCTAATGCAGAAAGACCTATAAGAAAATGTCAATTGTGAgatatattaatataatatataaatgtACGTATGTGTTATAAGAAATTTATAAGAAAGCAGTTTAAGACTGGAAGACAAAATATTACTCTATTTTAGTCCTGCTTTTTGTAGTCCTTTTTTAAGAGATGGAGTTTGTTCCTATTTTCTGTTGATTTAGCTTTTTATAATAATCAGTGCTGTTACAGCTTATTCTCATGCTGCTAATTTTCTTAGTACAACTAAATCAGATCGCCTTTTTTCCAGAATGATCGTCTTGtttgtaagaaacaaaaaaaacgaCAAAATTCCAGAGGGCTGTCATTGAACTATGACCCCTATGACattttcttctgtctctctggtgAAAACACTACTTTGCTGGTGCTGATGGAGGGACGAGGCTAAaacttattttattttaaaatgttgaaaatgtattaaatcttcACATTTCTTTATTTTGGGGTTGTACTTGGGTTTCAATGTTATACTATAGCACAATTTTGATTTGGGATTTTAGATATCTGGATTATAACTGTATATAATGTCAACAACCATTTCTGCTTCACAGCCAGCtgtaaaaatgtttgcaaatgcttTTTGTGACTGAATTGACTCTATGCCTTAGACTGGGGGAGATAATACAATACGTTttgggtaggggagaggagagggtgctgATAGACAGTACACCCATATGAAATCACTAGAGACGTGCCAAGGGCCTAGTTCCAATACCTGATTATCGTCCCTTTCTCTCCTGACGATCCCTGATATGACTGAGTGGGAAACTTAAACTTGACACTTACTTATCCAATCAGGATGATGTCAGGGCAGTTATTGGTAGGAAGGGAGGAAGTAAGGAGGTCCTTTTTAAGCAAGGCATGGGTagcaaactcattccatggagggcctagtgtctgcaggtttttggtttttcctttcaaataAGACCTAGAGGACCAGGTGaggagttctttactaattagtgaccttaattaatcaatcaagggAGGAGCGGAAAAACCCCAGACACTCTGCCCTCTGTTTAGACAGTTTCTACATTTTACAGCAGACTGATGCTTTGTCGCCTGCTGGGTACTTCAGTGAAAACAATGATGGTCTCCACATAGTGAAGACTTGTCTTTAATTTCAGATAGACTACCTATTTATATGAAACTAAGGGGTTAATACGATGACTAATTCATTTCATACCTCCTTTTAGTTCAAACATTGTGATATTGAAATCAGCAGAAACTGATGTTCACCGAAAGGCTAGGTCATTGCAGGAGCTATATACCAATCAACTTTTCTGTCCAATGGAGAGATTGGTTCAAATCCTTAGAGGATGATGGTGTGGCCTGTATGCTGGCTTTCATTCCAACTGATCCTTGATTTGGTCAAGTGATTTTAAATTATGTTCACCCCTTTGTGAAGAAGTCCAATAAATTATTTCTAGACTAATGTATAAAGCCACGTGGAGAAATACCTGGTTAGAAAGACATTTTAAAGACTGGTTTCCCAGACTCCGATTGAGCCGACTTCTGGACTAAAAGCATGTTCTACATACAATTTAGTCCTGGAATCAGCCTAATGTGGGTCTCGCAAACTGTCCCAATAAGTTGTCCCTCTCCTACGAATGAATATACATTTGCACTGAATGTAAAATGTTTGGAAAATCGTGTAAATAAAAGTGTTCACACTAAA
>XM_036967427.1
CCCAAGCCCTAACACGCTCCACTCGGGTTCTACAGGCGTGTACATGGTGCTTGGTAGAGCTGTCAGCCGCAATAGAAATACATATCTACTGGTATAGAGCGTTTTTTTTTGTCGCAGTAAAGTAGGGATTACATTACCAAATCAGTTCGAAGATCGACATTCTTTATTTAAACGAGCTACTCGTGTTTTGAGTATTTCAAACGGGTCCGTTTGCCGCTAGAAGAAGCAACATAAAAGGGGCGGGTGCGATTCATTACTGGCTCCAGTCCTGTGCAACACCTCAGCTAATCTGACGTTACAGTCTGGTGAGACATACTGTCACTGAGCCTGCCAGGTGAAGAGCCAATTTGGACGAACACTAGCGATGAAATAATTATTTAGGGCATTTTTATAGCTATATGTGTCTTTCCTAACGCCGAGGTGTCACGCGGGTGATATTGCGCTGTCATTATTTGACTttcgattttttattttttatatctgtATTTATTCCATTGGTTGTTGGATAACATTAGCTTGTTAGCAAgatagctagttaaacaacaatgtcGGATAACCAGAGCTGGAATTCTTCGGGTTCCGATGAAGACGTGGAGACGTCGGAATCGGGAGTCGGGCAGCCAGTTGTTGGTGTCGCCGAGCTCGGTGGAATCATCAGCAAGTGGACTAACTACATCCACGGCTGGCAGGATCGCTGGGTGGTCCTGAAGAACAACACTCTGAGCTACTACAAGTCTCAGGACGAGAGAGAGTTCGGCTGCAGAGGGTCCCTGTGTCTCAGCAAGGCTGTCATCACTcCCCATGAGTTTGACGAGTGCAGGCTGGATGTCAGTGTTAACGACAGTGTGTGGTACCTGAGGGCCACAGACTCAGAACACAGACACCAATGGATCAACTCCATCGAACTACACAGGGCGGAGTCTGGGTATGGGTCAGAACCCAGTCTGAGGAGACATGGCTCCATGCTGTCTCTCACGTCTGCTACCAGCGGCTACTCTGCCACATCCACATCCTCCTTCAAGGGTCACAGCCTGAGAGAGAAGCTGGCGGAAATGGAGACGTTCAGAGACATCCTGTGCAGACAGGTGGACACGCTGCAGAAGTACTTTGACGGCTGCTCCGACGCTGTCTCCAAGGATGAGCTGCAGAGAGACAAAGttgttgaggatgatgaggatgatttCCCCAACACTCGGTCAGACGGAGAGTTCATCCACAACAACAACGGCAGCAAGGAGAAGCTGTTCCGATCTCTGAGCCCTAAGGGCATCAATGGAATAGACTTTAAGGGCGAGGCGATCACGTTTAAGGCCACCACAGCTGGGATTTTGTCCACCCTGTCCCACTGCATCgacctgatggtgaagagagaggacagcTGGCAGAAGCGACTGGACAAGGAGacggaaaagaggaggaggatagaggagggctACCATTCCGCTCTCTCTGAGCTCAAGAAGAAGTCTCACTTTGGAGGGCCTGATTACGAGgagGGGCCTAACAGCCTGATCAATGAGGATGAGTTTTTCGATGCCGTTGAAGCCGCTCTTGACAGACAAGACAAGATGGAGGAACAGTCTCACACCGAGAAGTCGCGGATACAGAGATCCAGTCCAGTTCCCCCGGGAGATGTCTACTCCACCATAGGATCACACAGATTCGCTGACAAGGTGGAGGAGATGGTGCAGAATCACATGACCTACTCGCTGCAGGATATGGGCGGGGACGCCAACTGGCagctggtggtggaggagggggagatgaagGTGTacaggagggaggtagaggagaatGGTATTGTCCTGGACCCCCTGAAGGCCACCCATTCTGTGAAGGGAGTCACGGGACATGAGTTGTGTCACTACTTCTGGGACACGAACGTACGCAACGACTGGGAGACCACCATTGAGAACTTCAACGTTGTGGAGATGTTATCGGACAACGCTGTAATCGTCTATCAGACACACAAGAGGGTGTGGCCTGCATCCCAGAGAGACGTGCTGTACTTGTCTGCTATGAGGAAGATCCTGGCTAACAACGAGAACGACCCAGACACCTGGCTGGTCTGCAACTTCTCTGTGGACCACGACAACGCCCAGCCCACCAACAGGTGTGTTCGTGCCAAAATCAACATTGCCATGATATGCCAGACCCTGGTTAGCCCACCAGAGGGCGACCGAGAGATCAGCAGAGACAACCTTACCTGTAAAATCACCTACGTCGCCAATGTGAACCCAGGAGGCTGGGCTCCTGCCTCAGTTCTGAGGGCTGTGGCCAAGAGGGAGTACCCCAAGTTCCTCAAACGCTTCACCAGCTATGTCCAGGAGAAGACAGCCGGGAAACCTATCCTCTTCTAAGTTTCACAGGACTCGCAGCACCCCTGTCCACACAACAGACTGTTCCGAACATTGTGTATCATTTCAACCCAACTCTAGCTAGCCATCATGCTAAGTGCTAGGGTACAGCTAGGCCTTTTCAGACTAGCTTCCATGCGAGCTCTCTTGCTAGGTCTTCAGCTAGCTTCAATGCTAGTTTCCCATTCTATACCTCATGCTAGCTTCCTATACTAGCTCTCGTGCTAGTTTCCTATGCCAGGTCTTATGCTAGGTCCTTTGCTAATTCTCATGCTAGTTCTTATGCTAGCTCCCATGCTAGTTTCATTAGCTAATGCAGAAAGACCTATAAGAAAATGTCAATTGTGAgatatattaatataatatataaatgtACGTATGTGTTATAAGAAATTTATAAGAAAGCAGTTTAAGACTGGAAGACAAAATATTACTCTATTTTAGTCCTGCTTTTTGTAGTCCTTTTTTAAGAGATGGAGTTTGTTCCTATTTTCTGTTGATTTAGCTTTTTATAATAATCAGTGCTGTTACAGCTTATTCTCATGCTGCTAATTTTCTTAGTACAACTAAATCAGATCGCCTTTTTTCCAGAATGATCGTCTTGtttgtaagaaacaaaaaaaacgaCAAAATTCCAGAGGGCTGTCATTGAACTATGACCCCTATGACattttcttctgtctctctggtgAAAACACTACTTTGCTGGTGCTGATGGAGGGACGAGGCTAAaacttattttattttaaaatgttgaaaatgtattaaatcttcACATTTCTTTATTTTGGGGTTGTACTTGGGTTTCAATGTTATACTATAGCACAATTTTGATTTGGGATTTTAGATATCTGGATTATAACTGTATATAATGTCAACAACCATTTCTGCTTCACAGCCAGCtgtaaaaatgtttgcaaatgcttTTTGTGACTGAATTGACTCTATGCCTTAGACTGGGGGAGATAATACAATACGTTttgggtaggggagaggagagggtgctgATAGACAGTACACCCATATGAAATCACTAGAGACGTGCCAAGGGCCTAGTTCCAATACCTGATTATCGTCCCTTTCTCTCCTGACGATCCCTGATATGACTGAGTGGGAAACTTAAACTTGACACTTACTTATCCAATCAGGATGATGTCAGGGCAGTTATTGGTAGGAAGGGAGGAAGTAAGGAGGTCCTTTTTAAGCAAGGCATGGGTagcaaactcattccatggagggcctagtgtctgcaggtttttggtttttcctttcaaataAGACCTAGAGGACCAGGTGaggagttctttactaattagtgaccttaattaatcaatcaagggAGGAGCGGAAAAACCCCAGACACTCTGCCCTCTGTTTAGACAGTTTCTACATTTTACAGCAGACTGATGCTTTGTCGCCTGCTGGGTACTTCAGTGAAAACAATGATGGTCTCCACATAGTGAAGACTTGTCTTTAATTTCAGATAGACTACCTATTTATATGAAACTAAGGGGTTAATACGATGACTAATTCATTTCATACCTCCTTTTAGTTCAAACATTGTGATATTGAAATCAGCAGAAACTGATGTTCACCGAAAGGCTAGGTCATTGCAGGAGCTATATACCAATCAACTTTTCTGTCCAATGGAGAGATTGGTTCAAATCCTTAGAGGATGATGGTGTGGCCTGTATGCTGGCTTTCATTCCAACTGATCCTTGATTTGGTCAAGTGATTTTAAATTATGTTCACCCCTTTGTGAAGAAGTCCAATAAATTATTTCTAGACTAATGTATAAAGCCACGTGGAGAAATACCTGGTTAGAAAGACATTTTAAAGACTGGTTTCCCAGACTCCGATTGAGCCGACTTCTGGACTAAAAGCATGTTCTACATACAATTTAGTCCTGGAATCAGCCTAATGTGGGTCTCGCAAACTGTCCCAATAAGTTGTCCCTCTCCTACGAATGAATATACATTTGCACTGAATGTAAAATGTTTGGAAAATCGTGTAAATAAAAGTGTTCACACTAAA

Function

NR:

description
collagen type IV alpha-3-binding protein-like

GO: NA

KEGG:

id description
K08283 COL4A3BP; collagen type IV alpha-3-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036967425.1 False 4470 mRNA 0.46 16 13958633 13996453
XM_036967427.1 True 4391 mRNA 0.46 15 13958634 13996453

Neighbor

gene id symbol gene type direction distance location
LOC110509328 LOC106563105 coding upstream 16205 13940187 ~ 13942428 (+)
LOC110509678 LOC106563033 coding upstream 175928 13779399 ~ 13782705 (+)
LOC110509676 NA coding upstream 211174 13745413 ~ 13747459 (+)
LOC110509673 LOC106563107 coding upstream 227522 13728812 ~ 13731111 (+)
crf-bp crf-bp coding upstream 261147 13678513 ~ 13697486 (+)
atp6v1g1 LOC106563029 coding downstream 3801 14000254 ~ 14010168 (+)
slc31a1 LOC106563027 coding downstream 18589 14015042 ~ 14028322 (+)
prpf4 prpf4 coding downstream 38869 14035322 ~ 14041282 (+)
LOC118945712 NA coding downstream 42883 14039336 ~ 14039471 (+)
LOC118945711 NA coding downstream 43981 14040434 ~ 14040567 (+)
G2154512 NA non-coding upstream 22814 13915670 ~ 13935819 (+)
G2154396 NA non-coding upstream 171918 13786515 ~ 13786715 (+)
G2154384 NA non-coding upstream 192064 13766276 ~ 13766569 (+)
G2154379 NA non-coding upstream 205959 13752324 ~ 13752674 (+)
G2154564 NA non-coding downstream 16428 14012881 ~ 14013081 (+)
G2154565 NA non-coding downstream 16763 14013216 ~ 14013423 (+)
G2154573 NA non-coding downstream 47717 14044170 ~ 14044421 (+)
G2154574 NA non-coding downstream 48000 14044453 ~ 14044814 (+)
G2154575 NA non-coding downstream 48512 14044965 ~ 14045498 (+)
G2154438 NA other upstream 144663 13806013 ~ 13813970 (+)
G2154391 NA other upstream 182499 13772708 ~ 13776134 (+)
G2154294 NA other upstream 289463 13668289 ~ 13669170 (+)
G2153316 NA other upstream 1198143 12759880 ~ 12760490 (+)
G2155696 NA other downstream 1022174 15018627 ~ 15093949 (+)
G2157602 NA other downstream 2354264 16350717 ~ 16353665 (+)
G2158499 LOC106563144 other downstream 3192891 17189344 ~ 17191128 (+)
LOC110509751 LOC106563328 other downstream 5064090 18962089 ~ 19065920 (+)
LOC118945267 NA other downstream 5069725 19066137 ~ 19068784 (+)

Expression


Co-expression Network