si:ch211-202f5.3 (LOC106563025)


Basic Information

Item Value
gene id si:ch211-202f5.3
gene name LOC106563025
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 14054254 ~ 14056905 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036968187.1
GGGCGTCTGCTCTGTTCTCATAGGGGTGGGGTCAGCTGGTTCCCAGGTACACCAACAGCACTCTACCTCACCGGAGCATGTGTGTGGGCCATCTCAGTCTTTACTCTGACACACACTGCTACAGGTGTGGCTCCCTTTTCCTGTAAAGAGACACAGAGGAAGTGCACCTAGAAGGGTCTTCAAGAGACAACCATTAAACCTTTAAGTGCTCACTGGATTGTATGACCCATCTAAAGACCTGGGGAATTGACATTGGATGTCATACAACACTTGACTGCTGCGGAACTACACAAGTTGAAGAGAACTATTCTTGGAAGGCCAGTTCGAGTCACCAGAGGAAACCAGAACAACTGGTGACAGCAAAGCTTAATGTTCAGAAAGGAGCCTCAATACCGTGTCTGAGATCTGACATTGACAGTCACAGACCCTATCTACCTGTGTTTCGTCCTCTCAGCTGCCTTTAACCAGCCATCATGAATCTGTCTCTGGGCAGCTCTTATGGAGAAGTGACCATCCCTCGGGCCAAGCTACGTTCTGCAGAGGACAGCACGATCATCATCAACCCCATGGCCCTGGAAAGTACCTACAGCAACCGCAACTCTTCCCTCAACCCGTACGGTGCCTTCAAACCCAATGGGGAGTCGCAAGCCCCCTCAGACGTTACCAAGGGTGGGGATGGTGACGCCTCAAACCCCTCGCGCTACAACGGCCAGTCCTCCTACACAGTGCAGGAAGACAAGGAAGAGGAGGTGGGTCGCTCTCGGGCCTGCTGCCTGCGCTGCCGAAGGAAGTGAACTGGCAAATTCCACCCAGATCAGGAAACCGTCAAACAACACCCGGCTACAAAGGTTCAGGGTATATGAACTAAGACAATCAAGGGACACTGTCGGAAGACACTGTCGAACCTGGTGTTACCAGCTGGATTAAAAGCCAAAGCCATTACTGGTGAAACGTATAGTTTTGAAGGATTCATCAGTGGTATCATTAAAATGTTATGCAATTTCCAAAGGGATTCTTTTTGAGATTGGATGCAAGATGCACTCACACACTATGGCAGAATCTGCCTTTgaaacagaagtgttttatataaGCCTTTCACTTACGACTTTGTATGCTTGCTTTTTTTTCTTCTAGTCGACAAGACTGTGCTATATTTAGCTGTGGGTTTTTTTGTTAAATATTTATACCCTAATGTCTTCATGCCTTATTAGATTTTTTATCTGTCAGTGTTTGAATGACGTCAAAAAAGGCCACTTGGGTGGGTGATGCAACTAGCCAGTGTTCAGGGAGTGGTAGAGAGTAAGACAAATGCTACAGTACACATGTCAAGGAATTAATATGCAACAACCTTTTAATTCCTCTGTCAAACCAACCCGTCACAAAAGATGACATGCTAGGCCTTTTTTGATTTGTCATGGACAGACCTGACCGAACCAGAGAGGTGGATCTAGAGGAGGGGCAGCTAGCTCAGAGTCTGGGTTCGTTTCTATGGGCCTTACTGAGTCCAGTCTTCCCAACccataccacaccataacacaccacTCCATCCTGCTGATCCATCTGCTGGGCTGGTCGCTCTGCTGCTGCTGGTTTACAATGCTGCCTTTGTGCAACTGGGTCCCAGGAAACCAGGCCACAGGCCCCCGCAGCCCCAGCTCAAACCCCAGTAATTCTGCTCTGTGTGTGGTAAACAGTACCTCACTGTCCCCCCTGACCATAAAGAGTTGAAAGCGAGGCCTGACTGGATGAGAATTGAAATGCGATATGGCCATGCTCATGCTGTCTTGTTTGTATGAGTCACACAACCACTGTACGTCCCATAGTTTAGCCTTGTGAAACTATTACTGAAACTCTAATCTGCATTGTTCGTTTTTAGAAATTTGATAGAATTTTTTGGGTGGTGAACTTGTACAGCTTATTAGGGTCACCTCATGAACTGGTCTCATGTATAAAAGCCCCTCTTAGTTCAAGCCCCTAATCCCCCAACAGGATTACATGACGTGTGTAGGAGTTAGAACTTCAATGCGTGAActgtttattttattgttatcCAGTCAGCAGTGGACTACAACTACTCAGCAAAGCTCCGCAGGTTACTAGGACCCAGAGCTAATGGAATGTATAGCAAATGTCGACACTATGTATGATTGAGTTTGTATAATGATAACGTGGAATAAAATGTTGTAAATAAAattataatgataatgataa
>TU2463690
TGGGGTCAGCTGGTTCCCAGGTACACCAACAGCACTCTACCTCACCGGAGCATGTGTGTGGGCCATCTCAGTCTTTACTCTGACACACACTGCTACAGGTGTGGCTCCCTTTTCCTGTAAAGAGACACAGAGGAAGTGCACCTAGAAGGGTCTTCAAGAGACAACCATTAAACCTTTAAGTGCTCACTGGATTGTATGACCCATCTAAAGACCTGGGGAATTGACATTGGATGTCATACAACACTTGACTGCTGCGGAACTACACAAGTTGAAGAGAACTATTCTTGGAAGGCCAGTTCGAGTCACCAGAGGAAACCAGAACAACTGGTGACAGCAAAGCTTAATGTTCAGAAAGGAGCCTCAATACCGTGTCTGAGATCTGACATTGACAGTCACAGACCCTATCTACCTGTGTTTCGTCCTCTCAGCTGCCTTTAACCAGCCATCATGAATCTGTCTCTGGGCAGCTCTTATGGAGAAGTGACCATCCCTCGGGCCAAGCTACGTTCTGCAGAGGACAGCACGATCATCATCAACCCCATGGCCCTGGAAAGTACCTACAGCAACCGCAACTCTTCCCTCAACCCGTACGGTGCCTTCAAACCCAATGGGGAGTCGCAAGCCCCCTCAGACGTTACCAAGGGTGGGGATGGTGACGCCTCAAACCCCTCGCGCTACAACGGCCAGTCCTCCTACACAGTGCAGGAAGACAAGGAAGAGGAGGTGGGTCGCTCTCGGGCCTGCTGCCTGCGCTGCCGAAGGAAGTGAACTGGCAAATTCCACCCAGATCAGGAAACCGTCAAACAACACCCGGCTACAAAGGTTCAGGGTATATGAACTAAGACAATCAAGGGACACTGTCGGAAGACACTGTCGAACCTGGTGTTACCAGCTGGATTAAAAGCCAAAGCCATTACTGGTGAAACGTATAGTTTTGAAGGATTCATCAGTGGTATCATTAAAATGTTATGCAATTTCCAAAGGGATTCTTTTTGAGATTGGATGCAAGATGCACTCACACACTATGGCAGAATCTGCCTTTgaaacagaagtgttttatataaGCCTTTCACTTACGACTTTGTATGCTTGCTTTTTTTTCTTCTAGTCGACAAGACTGTGCTATATTTAGCTGTGGGTTTTTTTGTTAAATATTTATACCCTAATGTCTTCATGCCTTATTAGATTTTTTATCTGTCAGTGTTTGAATGACGTCAAAAAAGGCCACTTGGGTGGGTGATGCAACTAGCCAGTGTTCAGGGAGTGGTAGAGAGTAAGACAAATGCTACAGTACACATGTCAAGGAATTAATATGCAACAACCTTTTAATTCCTCTGTCAAACCAACCCGTCACAAAAGATGACATGCTAGGCCTTTTTTGATTTGTCATGGACAGACCTGACCGAACCAGAGAGGTGGATCTAGAGGAGGGGCAGCTAGCTCAGAGTCTGGGTTCGTTTCTATGGGCCTTACTGAGTCCAGTCTTCCCAACccataccacaccataacacaccacTCCATCCTGCTGATCCATCTGCTGGGCTGGTCGCTCTGCTGCTGCTGGTTTACAATGCTGCCTTTGTGCAACTGGGTCCCAGGAAACCAGGCCACAGGCCCCCGCAGCCCCAGCTCAAACCCCAGTAATTCTGCTCTGTGTGTGGTAAACAGTACCTCACTGTCCCCCCTGACCATAAAGAGTTGAAAGCGAGGCCTGACTGGATGAGAATTGAAATGCGATATGGCCATGCTCATGCTGTCTTGTTTGTATGAGTCACACAACCACTGTACGTCCCATAGTTTAGCCTTGTGAAACTATTACTGAAACTCTAATCTGCATTGTTCGTTTTTAGAAATTTGATAGAATTTTTTGGGTGGTGAACTTGTACAGCTTATTAGGGTCACCTCATGAACTGGTCTCATGTATAAAAGCCCCTCTTAGTTCAAGCCCCTAATCCCCCAACAGGATTACATGACGTGTGTAGGAGTTAGAACTTCAATGCGTGAActgtttattttattgttatcCAGTCAGCAGTGGACTACAACTACTCAGCAAAGCTCCGCAGGTTACTAGGACCCAGAGCTAATGGAATGTATAGCAAATGTCGACACTATGTATGATTGAGTTTGTATAATGATAACGTGGAATAAAATGTTGTAAATAAAattataatgataatgataattgGGACTGTGGTATaaactacactgaacagaaatataaacacaacatgtaaagtgttggtcccatgtctccatga

Function

NR:

description
PREDICTED: uncharacterized protein LOC106563025

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036968187.1 False 2211 mRNA 0.46 2 14054330 14056905
TU2463690 True 2261 TUCP 0.46 2 14054254 14056879

Neighbor

gene id symbol gene type direction distance location
si:ch211-202f5.2 LOC106563026 coding downstream 8684 14041249 ~ 14045646 (-)
cdc26 cdc26 coding downstream 24218 14028310 ~ 14030112 (-)
LOC110509679 NA coding downstream 118051 13933407 ~ 13936279 (-)
LOC110509327 LOC106563032 coding downstream 184460 13807407 ~ 13869870 (-)
LOC110509677 LOC106563034 coding downstream 296809 13753775 ~ 13757521 (-)
pisd LOC106563023 coding upstream 7706 14064611 ~ 14114275 (-)
wu:fi75a02 LOC106563022 coding upstream 65135 14122040 ~ 14148522 (-)
LOC110509689 LOC106563103 coding upstream 127386 14184291 ~ 14186274 (-)
LOC110509692 LOC106563018 coding upstream 392542 14449447 ~ 14492040 (-)
LOC110509694 LOC106563017 coding upstream 532870 14589775 ~ 14771641 (-)
G2154724 NA non-coding downstream 19465 14034624 ~ 14034865 (-)
G2154723 NA non-coding downstream 21508 14032575 ~ 14032822 (-)
G2154722 NA non-coding downstream 35995 14018004 ~ 14018335 (-)
G2154721 NA non-coding downstream 36353 14017707 ~ 14017977 (-)
G2154719 NA non-coding downstream 39009 14015082 ~ 14015321 (-)
G2154745 NA non-coding upstream 3240 14060145 ~ 14060369 (-)
G2155074 NA non-coding upstream 15087 14071992 ~ 14074346 (-)
G2155085 NA non-coding upstream 42753 14099658 ~ 14188351 (-)
G2155064 NA non-coding upstream 140477 14197382 ~ 14200607 (-)
G2155121 NA non-coding upstream 150378 14207283 ~ 14207489 (-)
G2154637 NA other downstream 44163 14000525 ~ 14010167 (-)
G2154418 LOC106563033 other downstream 272076 13780659 ~ 13782254 (-)
G2154361 LOC106563107 other downstream 323234 13728833 ~ 13731096 (-)
G2153683 NA other downstream 962974 13087453 ~ 13091356 (-)
G2155063 LOC106563020 other upstream 166216 14223121 ~ 14223931 (-)
G2155120 NA other upstream 170915 14227820 ~ 14231006 (-)
G2157715 NA other upstream 2324285 16381190 ~ 16386045 (-)
G2157743 NA other upstream 2364772 16421677 ~ 16423421 (-)
G2158088 LOC100136012 other upstream 2550720 16607625 ~ 16608006 (-)

Expression


Co-expression Network