LOC110509688 (LOC106563021)


Basic Information

Item Value
gene id LOC110509688
gene name LOC106563021
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 14171799 ~ 14175996 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590723.2
TGTCAAAATAATGTGCGGAACAGTTCACCATCACGAACGAGGCTGGGTGAGTAAGTCACGAAGGCCTGCATGATCCCTCCCGACTAGAATGCGATTTCTACTGGACTTTGCACTGACTTAAAGAGAGGTTTTTCATTCTCGGGATAACAATAAAATCTTGTAGAAACATGCCTGAGAATAACAACCAGCAGCGCCAGGTtcaggaggaggcagaggaggtgaAGGTCATTATGATGGACAACATGGAGAAGACTGAGGAACGCAAGGAGAAAGTGCAGGACCTTGACGAAAGGGCTGGGGAACTGAAGagCAAGTCCTTCCACAAGACCGCAATGAAGGTGCAGAAGCAGATGAAATGTGACAACGTCAAGGCCTCCTGGAAGCTCATTGCTGTTGTTGGAGCCATGGCCGCGATTATCATTATAGTTGCCATCATTATGTGGGTCAACAAAAAATCGAGCCCTGAAATCACACATGAAAGAGTCATTAACCCAATGCACGAAAATGGCATTACACCAACAACCAATGGGCCTGGGATGTAGGCTAAACCAGGACCAATATGGCTGAAGAGGAAACAAATAGGGGACACTAATCGAAAGATACTACTATCGGTCAAAAGTCCCCCCCAATAAAATTCTGGAGTTGATGCTTTACTTGTCCTCATACACCTATAGGATACTCCTACTTATGCATCAGGGAAGCGATAATGTGTTAGGTGCTCAAATAATCCCATTATTCAGAAtacttttattatttattatgtaTTACTGGACTTATTGGGATACATTCTATTTCTTTTTCTTTAttcaacaaggcaagtcagttaaaaacaaattcttattttcaatgacggccaaggaacagtgggttaactgccttgttcaggggcagaacgaccaatttttaccttgtcagctcggggatttgatcttgcagcctttcggttactagtccaactcgctaaccgctaggctacctgccaccccataattAAGGTTAACCTGAATAACCTCACATATTCAATGGTACAATTCATTTACCAAACAGTTATGTCCAGACATAAATGTGTTTTAAGATATTGGCTCTTATTTTTACTGGAGGTGCACATCATTTTCTCTCGGTCATTCTTGAAGATTCCTTATCGGCTAGTTGATAGATGTCGCGTGTTGACAAAACAAACAAGAATTGCCATATATTAACATGCAACACAATTCTCTTAAAAAGAGACTAAAGTCCTCATAATAatgcatttttaaaaatgttacatTTGATTCATAGTCACATTAAATAATTGACAACAgcaataatacatttttttttgctgtaAGCTATGGAGTTGTCACCCTTTTATGTCACTTTTAAAACAGTCGGCAGGAACTCCCCAATAGACAGCTGTCTTGTTCTTTGAACAGATTCATGGAGTATAATAAAACACTTATTGATTTCATCTTGCATTTTAATCAAGTAAATTACAGTTGATCAGAAAATGTACATGAACCCTGATTGCTCAAGATTTCAGTGGAAATATGttattttgacatttttacaaaataattaaaaatgaaaagctgaaa

Function

NR:

description
uncharacterized protein LOC110509688

GO:

id name namespace
GO:0016192 vesicle-mediated transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590723.2 True 1574 mRNA 0.39 3 14171799 14175996

Neighbor

gene id symbol gene type direction distance location
prpf4 prpf4 coding upstream 130517 14035322 ~ 14041282 (+)
LOC118945711 NA coding upstream 131232 14040434 ~ 14040567 (+)
LOC118945712 NA coding upstream 132328 14039336 ~ 14039471 (+)
slc31a1 LOC106563027 coding upstream 143477 14015042 ~ 14028322 (+)
atp6v1g1 LOC106563029 coding upstream 161631 14000254 ~ 14010168 (+)
LOC110509690 LOC106563020 coding downstream 39126 14215122 ~ 14231240 (+)
LOC110509691 LOC106563019 coding downstream 113216 14289212 ~ 14396808 (+)
LOC110509696 LOC106563151 coding downstream 609991 14785987 ~ 14806264 (+)
LOC110509698 NA coding downstream 699721 14875717 ~ 14879923 (+)
LOC110509699 LOC106563142 coding downstream 780344 14956340 ~ 14970212 (+)
G2154750 LOC106563023 non-coding upstream 100646 14070253 ~ 14071153 (+)
G2154575 NA non-coding upstream 126301 14044965 ~ 14045498 (+)
G2154574 NA non-coding upstream 126985 14044453 ~ 14044814 (+)
G2154573 NA non-coding upstream 127378 14044170 ~ 14044421 (+)
G2154565 NA non-coding upstream 158376 14013216 ~ 14013423 (+)
G2154823 NA non-coding downstream 24887 14200883 ~ 14201383 (+)
G2154830 NA non-coding downstream 57570 14233566 ~ 14233913 (+)
G2154832 NA non-coding downstream 59076 14235072 ~ 14235351 (+)
G2154834 NA non-coding downstream 60422 14236418 ~ 14236706 (+)
G2154512 NA other upstream 235980 13915670 ~ 13935819 (+)
G2154438 NA other upstream 357829 13806013 ~ 13813970 (+)
G2154391 NA other upstream 395665 13772708 ~ 13776134 (+)
G2154294 NA other upstream 502629 13668289 ~ 13669170 (+)
G2153316 NA other upstream 1411309 12759880 ~ 12760490 (+)
G2155696 NA other downstream 842631 15018627 ~ 15093949 (+)
G2157602 NA other downstream 2174721 16350717 ~ 16353665 (+)
G2158499 LOC106563144 other downstream 3013348 17189344 ~ 17191128 (+)
LOC110509751 LOC106563328 other downstream 4884547 18962089 ~ 19065920 (+)
LOC118945267 NA other downstream 4890182 19066137 ~ 19068784 (+)

Expression


Co-expression Network