LOC110509699 (LOC106563142)


Basic Information

Item Value
gene id LOC110509699
gene name LOC106563142
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 14956340 ~ 14970212 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036967986.1
TCACAGCTCCAGTAGTGCTACTGAATCGGTTTACTTCCGTTGTAAATGCGCAGGCGCCAGAGATGCGCTCAATCAGAGAAGATCTCATGACGCGATAGCAGGGACAGCTGCAAAATATCTCAGCAAAATGGCAGTGGAGAAGCGCTTGGCATTCTCTATTGTGCAGTTCCTGCGAGATCAAACTCACTGTGGCGCTTTGAATTCCGATGAGCAGGAAAGCCTCGAAGTTGCAATACAATGTTTGGAGACCACCTTCAAGATCAACTCCAGTGACTGTCATCTCGCAGCACCACAACCTCTCACTGAAATATTCCTCAATTCTCTCCTCAAGAATGATCAGAATAATCCGGTGCCACCAGAGACGTCCCCATCACCAGAAGACACAGAGAGGGCAGAACAACTGAAGAATGAAGGGAATAATCACATGAAAGAGGAGAACTACAGCTGTGCGGTGGAATGCTACTCAAAAGCCATCAATCTGGACCTCCGAAACGCTGTCTACTACTGTAACAGGGCTGCCGCCCACAGTAGACTGGGTAACTACACAGAAGCAACGGGGGACTGTGAAAGGGCCATAGGGATCGACCCCAGCTACAGTAAAGCCTATGGGAGAATGGGATTGGCATTTACTGCTATGAATAAGTACCCAGAGGCCATCTCCTTCTTTAAGAAAGCTCTGGTGTTAGATCCAGAGAACGACACCTACAAATCCAACCTGAAGATTGCTGAGCAGAAGCAAAAAGAGGCAGTCAGTCCTATAGCTACGGGACTGGGATTTGACATGGCCAGCCTCATCAACAACCCTGCCTTCATCAGCATGTATGTCTGGGATGATGTCCAATGCAGTTGGGGGTCCAGCAGCAGGAGTGGGAGGACTGTCGGACATCTCCAGCCTGATTGAAGCtggtcagcagtTTGCCCAGCAGATCCAGCATCAGAACCCAGAGTTGATCGAACAGCTGAGGAACCACATCCGCAGCCGCTCCTTCAGTGGCAGCGCTGAGGAGCACTCGTGATCCACACAGGTCTGTGTA
>XM_021590740.2
TCACAGCTCCAGTAGTGCTACTGAATCGGTTTACTTCCGTTGTAAATGCGCAGGCGCCAGAGATGCGCTCAATCAGAGAAGATCTCATGACGCGATAGCAGGGACAGCTGCAAAATATCTCAGCAAAATGGCAGTGGAGAAGCGCTTGGCATTCTCTATTGTGCAGTTCCTGCGAGATCAAACTCACTGTGGCGCTTTGAATTCCGATGAGCAGGAAAGCCTCGAAGTTGCAATACAATGTTTGGAGACCACCTTCAAGATCAACTCCAGTGACTGTCATCTCGCAGCACCACAACCTCTCACTGAAATATTCCTCAATTCTCTCCTCAAGAATGATCAGAATAATCCGGTGCCACCAGAGACGTCCCCATCACCAGAAGACACAGAGAGGGCAGAACAACTGAAGAATGAAGGGAATAATCACATGAAAGAGGAGAACTACAGCTGTGCGGTGGAATGCTACTCAAAAGCCATCAATCTGGACCTCCGAAACGCTGTCTACTACTGTAACAGGGCTGCCGCCCACAGTAGACTGGGTAACTACACAGAAGCAACGGGGGACTGTGAAAGGGCCATAGGGATCGACCCCAGCTACAGTAAAGCCTATGGGAGAATGGGATTGGCATTTACTGCTATGAATAAGTACCCAGAGGCCATCTCCTTCTTTAAGAAAGCTCTGGTGTTAGATCCAGAGAACGACACCTACAAATCCAACCTGAAGATTGCTGAGCAGAAGCAAAAAGAGGCAGTCAGTCCTATAGCTACGGGACTGGGATTTGACATGGCCAGCCTCATCAACAACCCTGCCTTCATCAGCATGGCCGCCAGTGTGATGCAGAACCAGCAAGTGCAACAGCTTATGTCTGGGATGATGTCCAATGCAGTTGGGGGTCCAGCAGCAGGAGTGGGAGGACTGTCGGACATCTCCAGCCTGATTGAAGCtggtcagcagtTTGCCCAGCAGATCCAGCATCAGAACCCAGAGTTGATCGAACAGCTGAGGAACCACATCCGCAGCCGCTCCTTCAGTGGCAGCGCTGAGGAGCACTCGTGATCCACACAGGTCTGTGTACTACAACACAGAGGTTAGGGCTCGCTCTTAGAGTGCATCTCCATAGTCTAATAAAGAGGCGTCCTCCCCTTCATGTGCTCTAATGGAATGGTGAGAATTAGCATGGAGATTGTGGTGGATTTGATGCCACCTGTCCAGTTATATCATAGCAGAGACCTGATTGTACATGTGCGCTTTTGTTTTACTGGCAATAGATGGATCAGGATCTGCATATTAATTACTGAAACtgttattaccatgttgttaCACAAGGTGAAAAGGACATTTGAAGGCATGTAAATGTTTCTTACCTTCAGCGTATATGTTTCAATAAAGGAAGGGCAACCATATGATGTGA

Function

NR:

description
small glutamine-rich tetratricopeptide repeat-containing protein beta-like

GO: NA

KEGG:

id description
K24925 SGTB; small glutamine-rich tetratricopeptide repeat-containing protein beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036967986.1 False 1034 mRNA 0.50 10 14956340 14969875
XM_021590740.2 True 1409 mRNA 0.48 11 14956340 14970212

Neighbor

gene id symbol gene type direction distance location
LOC110509698 NA coding upstream 76417 14875717 ~ 14879923 (+)
LOC110509696 LOC106563151 coding upstream 150076 14785987 ~ 14806264 (+)
LOC110509691 LOC106563019 coding upstream 559532 14289212 ~ 14396808 (+)
LOC110509690 LOC106563020 coding upstream 725103 14215122 ~ 14231240 (+)
LOC110509688 LOC106563021 coding upstream 780344 14171799 ~ 14175996 (+)
trnaa-ugc-224 NA coding downstream 59816 15030028 ~ 15030099 (+)
LOC110509704 NA coding downstream 179076 15149288 ~ 15151748 (+)
LOC110509331 LOC106567539 coding downstream 868103 15838315 ~ 15844398 (+)
LOC110509705 LOC106563137 coding downstream 953639 15923851 ~ 15929722 (+)
ehmt1b NA coding downstream 1061545 16031757 ~ 16061375 (+)
G2155517 NA non-coding upstream 138424 14814444 ~ 14817916 (+)
G2155455 NA non-coding upstream 291306 14664802 ~ 14665034 (+)
G2155454 NA non-coding upstream 293245 14662668 ~ 14663095 (+)
G2155402 NA non-coding upstream 356519 14599590 ~ 14599821 (+)
G2155401 NA non-coding upstream 356957 14599164 ~ 14599383 (+)
G2155717 NA non-coding downstream 135770 15105982 ~ 15108773 (+)
G2156433 NA non-coding downstream 462422 15432634 ~ 15432922 (+)
G2156469 NA non-coding downstream 486861 15457073 ~ 15457322 (+)
G2156480 NA non-coding downstream 499375 15469587 ~ 15469788 (+)
G2156481 NA non-coding downstream 499936 15470148 ~ 15470489 (+)
G2154512 NA other upstream 1020521 13915670 ~ 13935819 (+)
G2154438 NA other upstream 1142370 13806013 ~ 13813970 (+)
G2154391 NA other upstream 1180206 13772708 ~ 13776134 (+)
G2154294 NA other upstream 1287170 13668289 ~ 13669170 (+)
G2153316 NA other upstream 2195850 12759880 ~ 12760490 (+)
G2155696 NA other downstream 48415 15018627 ~ 15093949 (+)
G2157602 NA other downstream 1380505 16350717 ~ 16353665 (+)
G2158499 LOC106563144 other downstream 2219132 17189344 ~ 17191128 (+)
LOC110509751 LOC106563328 other downstream 4090331 18962089 ~ 19065920 (+)
LOC118945267 NA other downstream 4095966 19066137 ~ 19068784 (+)

Expression


Co-expression Network