LOC110509702 (LOC106563139)


Basic Information

Item Value
gene id LOC110509702
gene name LOC106563139
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 15038817 ~ 15087213 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590749.2
GGTCGTGGGACTGTCCCAAGTGAGAGTGCTCAAGGCTGACACCTCTTCAgtgtctttttttaaatgtataactAAATGCATGGAAACAACCGGATGTTTTAATAGCAGATGTTTTATttacaatgtttttattttgtaagTAGTCGTGTTTTGAGGAAGTTTTAGATTTCATAACGAGGTTGAATTTTGGATGATAGTCGCTTGAGTTCGGAGTTCCAAGATGAACTTCAATCTGACGTTCATCAAAAGTCCGGTGGTGGTGTTCCTGCTGTGCTCTTGGCTGGTGTGCTGTGGGGCAGAGCTGAATGGCGTGGTGGCGACCCAGTGGTCCGGCGATGACAGGAACCGGACGCTGCAACACAAAAACTGTGTGGAGAACCAGCAGTACCTCCACCAGGGCCTCTGCTGTCTCAACTGCCAGGCTGGTACATTCATGCTGAGGGCGTGCGACAGGGACATGGAGCAAGGGACGTGCATGCCCTGCGAACATGGCTTGTCCTACACAGAACACTCCAACGGGATGAACCGCTGCCTGCCCTGCACCCACTGTCGCATGGACCAGAGCCAGACAGTGCCCTGTACCAGTACAGCAGACACCCAGTGCCAGTGTCAAGCGGGCACCTTCTGTGTGCCAGAGCAGGCCTGTGAGGTCTGCAAGAGATGTGCCAAGTGTAAagcgggggaggaggaggtgaagaaatGCACCCCCATCTCCAACACTGCGTGTAGGAAACGAGACATCTCCACTACCCTCCACCCGATTGCCATCCCCACCCCCGCCCCCATCTCTGCAGAGACCATAGTTACGCCATTGGTCATTCTGCTCttgctcttcctcctcttcatcggGATTGGTGTGTGGCTTTGGATCAAGAGGCCATGTACATTTCGGCCAGTTTGTCTCTCAGGTTCAGACAGTCGCTGTGACTCCAGTGACATTGTGAAGATTGCCATTGGTGAGAGTGGACCCAcagcagaggagagacagaacagccAGAATGCTGgcctggagggggaggagggggaggaggtccgTCCCGAGTCACGTCCCCTGCTGCAGGAGACCCAGGGCGGCCTGATCAAGGCCTCCCCTCCCCTGGGATTGGGGGAGGACGAGGACCGGGGCCTGGGTGACAGCCTGCCCAACACCACCAGCTCCTCCCAGACCAGCCTGTCGGCCCTGCCCACCGCCGGGGCAGCCTCGTCGGGCAGCTCCCCCCGACACAGCCCCTCCGCCCAGAGACTGCAGCCCACAGCCAGGGATGATCCTCTGCAGAAGAGACTGGTGTCCCTGATAGgGGATGAGACGTCCCTGAAGAAGAGCTTTGACCTCTTCGATGAGTGCCTGGACGTGCGGATCCACAACAAGTTTTTTCGCTACATCGGCGTCCATGACAACCACATCAAGATGGCGGAGAGTGACCCCCCTAGCGACAAGGTGTATGACCTGCTGAAGAACTGGATGCAGAAGGAGGGCCTGAAAGCGGACATCAACTCCCTGCTCCAGGCCCTTCTCAGTCTGGACCAGAGGCGCTCCGCTGAGAGCATTGCCTTCGCTGCCATCCAGAAGGGCTACTACAAACATGCAGACATGCCCTGACACCCCCAGCCCACTGGGGGGCTCTGCCTCAGAGACATGTGTGGATtgagattaaataaaaaaacattgatgAAAGACAACGTCAACTCTTATCGGCCTAATTGGCCTGATGTATTCTGCCTATATGCCTGTGCCTCTAAAACAACACCAATGGAGGAGTTGGAGATAAACAATGTTGTCTTTTGAATATCTGCCAATATGGTCTGGTGTATTTGGCCTAAAGGCCCGTGCTTtctaaaacaaaatataaaaaaacaaaatggagGATTTGGGGATAAACCTTGTTTTCTTTTGAAGATAGCATTATCGGCCTGGTGttctaaaacaaaaacataaaatggTAGAAGAGTTGGATGATGTTGATGTTTTCCAGTGGGTGGATCTGGAGCTCAGCTTTGACCTCCATGATTTTACGCCCCACCCCTTCTCTCTGAGCGACTGACATGGCTTATAAGCCAATACCGAACCCTGGGACAGGGACATACACTGGTTTGTAGGAGTGGCATTAGCTTGCGCGTTCCTATGCCCAGGCGTTGCTGACGCCTGCCAGATATtacaatgcctggataggtattttaagtaTCGGCAAATCACAAGATATGTTATaccaatctgtcagtcgatgacacagtTGATGGcgtggcacgcaaccattggttggTGCATGTAACGTCTGAGCAAGGGAACGCAACCACTATGTCACTGATACTGCGTCTACTTGATGCACTGGCCTCTGGCACGTGTAGGGTTTTGAGATACAGGTAACAAATGCCCATATTAGGCAAAAGGTTATATGTTTGAAGTACAGGTAGAGATAGGCCATTTAAGCATAATTCTGTTaaaaattacagtaaaatacagacCATATTGTATTATGTTAGTTTAAAATGCAGGTTGGTATGATTTTAATATTTGCATATTTGGGTGTAAATATGTTTTATACGGTAGTCCATTACTGTTACTGTTTTGTTTTTTGAAGTATCAGAATTCGTGCCATAGGCTCATTTAAAGTGTATAAGTGCAGGCAAGGGcgaagattatttttttttaaatgcataagTGACTAAACTGAATGTTTTATAGACTGCGTTTTTAGTTATTTTGTTTTTCATTGTTGATGCGTTCTCACACTGCACTTGTTGGGAGGAGTTTCCGTAACTATTTCTTTTGTTAGTCAAATGTTTCTCAAACATTTCCCACAAACACTCAGAGCCCTCAAGGTTTCATAGCTGTTTTATTTATTGACATATTTATTTTAAACGGATGATAAttacgtttcattatttattcaaTTACCAACACAGCAACCCTGGAAAACTAAACAGGGCAGTAATGTGTTGCTACGTTATCATGACTACATTTACCTAGAGGGCAACATGACTGAGATCAAATAGACAGACAGGAGTGGCTGACCTGCATTTGGGGTTCATCCTGTCCTGATCGATGGCGCCCCACTGATCAAAGACTATGTTCGGTCAGTGCACATACTGTCAAAGAAGTTCATAGTTACAGTATATATGCCATTTCTGCACATAGAGTTTCTTATTCAGTCAAGGTGGTCATCATAAGGTCACTTTTGTAATTATGCTTAACTCAACATTTGTGGACTATTGAAAAAcgtttctctctctgcttgatTCACACTGTACTTTTCACATTGTCCAGTATAGCTCTGCTCGGAtttggctcagtagtgtgaaaagggtaatAATGTATTGATAAAAAGTTGGACTCCTTTATACATGTCATCAAAGACATGAATATACAGGTACGCAAAGCACGTTGTTTCTCATTGTTTGGCTCTGTCAAGAAGATGAAGGAAAGCTTTTCTGGATATTTAAGTCcaagttctttttttttttttgaaaagtcCAAGTTTATTTCCTGTAGCATCCTTTGTACATACATTACCAAGAGTGGTTTTATGTGcttcacattatatatatatatatatatatatatagagagagagagagagttttattAACAAAAAAGAAAAGCCTTAAAGCTGAAGGAATACTAGTATATGATTACTAAGTATGAGCACATTAAACTTGGTTTAGCCCCTTTTTCCCTCTAGTCTAGTGGCTACACTTATGTAAAAGAGCGaagaaatcttttttttttatagctgACAGATTTGAAACTACAGTGCTGGCACTGCCATCTATTGACGGACAATGAAAAAACAGCCTGCATCAATTTCTATGAACCTTTATTTTTTCTAATTCTTCATAATGCTTTTCTACCAACATTTTTTAACACACCTCTTCCATTATAATATTACCTTTGAGACGGCTTTTGGCTCTTTTTTTTCATGAACTTTTAGGAGTTAGGATTATACATTGGAGTTCATATCATGTTTGCGCTGTGGCGGTCTCACACCTCACTTCTGTTTATTTAGTTGCAAAGCTCAAAAACTTTTTTCTTATTTAATTTTCTCCCTTCGACAATTGTTTGCTAGTGTCTGGATTTCAGATAAGAATGTGTCAAAGCCATTGTGTTTGTTTAATGTCCGTTTGAAATAAACATTTTGTACAAATATCCC
>TU2465290
tagagagagagggagagagagagagagttttattAACAAAAAAGAAAAGCCTTAAAGCTGAAGGAATACTAGTATATGATTACTAAGTATGAGCACATTAAACTTGGTTTAGCCCCTTTTTCCCTCTAGTCTAGTGGCTACACTTATGTAAAAGAGCGaagaaatcttttttttttatagctgACAGATTTGAAACTACAGTGCTGGCACTGCCATCTATTGACGGACAATGAAAAAACAGCCTGCATCAATTTCTATGAACCTTTATTTTTTCTAATTCTTCATAATGCTTTTCTACCAACATTTTTTAACACACCTCTTCCATTATAATATTACCTTTGAGACGGCTTTTGGCTCTTTTTTTTCATGAACTTTTAGGAGTTAGGATTATACATTGGAGTTCATATCATGTTTGCGCTGTGGCGGTCTCACACCTCACTTCTGTTTATTTAGTTGCAAAGCTCAAAAACTTTTTTCTTATTTAATTTTCTCCCTTCGACAATTGTTTGCTAGTGTCTGGATTTCAGATAAGAATGTGTCAAAGCCATTGTGTTTGTTTAATGTCCGTTTGAAATAAACATTTTGTACAAATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590749.2 False 4148 mRNA 0.45 10 15038817 15077010
TU2465290 True 593 lncRNA 0.34 2 15038821 15087213

Neighbor

gene id symbol gene type direction distance location
LOC110509700 LOC106563141 coding downstream 38226 14973955 ~ 15000591 (-)
LOC110509329 NA coding downstream 91703 14945612 ~ 14947114 (-)
LOC110509697 LOC106563143 coding downstream 95616 14814434 ~ 14943201 (-)
LOC110509694 LOC106563017 coding downstream 267176 14589775 ~ 14771641 (-)
LOC110509692 LOC106563018 coding downstream 546777 14449447 ~ 14492040 (-)
LOC110509703 LOC106563138 coding upstream 28969 15105979 ~ 15425308 (-)
LOC110509706 LOC106563136 coding upstream 893482 15970492 ~ 16017499 (-)
stxbp1a LOC106563129 coding upstream 1581376 16658386 ~ 16701533 (-)
slc31a2 copt2 coding upstream 1688335 16765345 ~ 16776377 (-)
LOC110509719 fut7 coding upstream 1781910 16858920 ~ 16866531 (-)
G2156035 NA non-coding downstream 232255 14760072 ~ 14806562 (-)
G2155397 NA non-coding downstream 450988 14587621 ~ 14587829 (-)
G2155395 NA non-coding downstream 451804 14586733 ~ 14587013 (-)
G2155393 NA non-coding downstream 453845 14584736 ~ 14584972 (-)
G2155387 NA non-coding downstream 457924 14580677 ~ 14580893 (-)
G2156203 NA non-coding upstream 23180 15100190 ~ 15100412 (-)
G2156265 NA non-coding upstream 111871 15188881 ~ 15189196 (-)
G2156303 NA non-coding upstream 171492 15248502 ~ 15249062 (-)
G2156440 NA non-coding upstream 361428 15438438 ~ 15438640 (-)
G2156442 NA non-coding upstream 362105 15439115 ~ 15439426 (-)
G2155120 NA other downstream 807811 14227820 ~ 14231006 (-)
G2155063 LOC106563020 other downstream 814886 14223121 ~ 14223931 (-)
si:ch211-202f5.3 LOC106563025 other downstream 981938 14054254 ~ 14056905 (-)
cdc26 cdc26 other downstream 1009047 14028310 ~ 14030112 (-)
G2154637 NA other downstream 1028650 14000525 ~ 14010167 (-)
G2157715 NA other upstream 1304180 16381190 ~ 16386045 (-)
G2157743 NA other upstream 1344667 16421677 ~ 16423421 (-)
G2158088 LOC100136012 other upstream 1530615 16607625 ~ 16608006 (-)
G2158111 akna other upstream 1566671 16643681 ~ 16646597 (-)
LOC110509757 LOC106563370 other upstream 4199258 19275539 ~ 19277044 (-)

Expression


Co-expression Network