Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110509730 |
| gene name | LOC106563153 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048593.1 |
| NCBI id | CM023247.2 |
| chromosome length | 47748341 |
| location | 17340761 ~ 17383473 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| sarcoplasmic/endoplasmic reticulum calcium ATPase 2 |
| id | description |
|---|---|
| K05853 | ATP2A; P-type Ca2+ transporter type 2A |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021590795.2 | True | 4715 | mRNA | 0.51 | 21 | 17340761 | 17383473 |
17,340,000
17,350,000
17,360,000
17,370,000
17,380,000
17,390,000
17,400,000
17,410,000
17,420,000
NC_048593.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110509728 | LOC106566295 | coding | downstream | 5701 | 17204035 ~ 17335060 (-) |
| specc1lb | LOC106563144 | coding | downstream | 139969 | 17170684 ~ 17200792 (-) |
| adora2ab | LOC106563117 | coding | downstream | 191502 | 17144252 ~ 17149259 (-) |
| LOC110509725 | LOC106563120 | coding | downstream | 201151 | 17136250 ~ 17139610 (-) |
| LOC110509723 | LOC106563118 | coding | downstream | 204870 | 17094056 ~ 17135891 (-) |
| LOC110509734 | ub2g1 | coding | upstream | 35806 | 17419279 ~ 17425513 (-) |
| LOC110509735 | LOC106563157 | coding | upstream | 44932 | 17428405 ~ 17477564 (-) |
| LOC110509737 | LOC106563158 | coding | upstream | 133616 | 17517089 ~ 17597551 (-) |
| LOC110509738 | LOC106563159 | coding | upstream | 292959 | 17676432 ~ 17800749 (-) |
| LOC110509743 | LOC106563163 | coding | upstream | 1114459 | 18497932 ~ 18722649 (-) |
| G2159013 | NA | non-coding | downstream | 31010 | 17309535 ~ 17309751 (-) |
| G2159011 | NA | non-coding | downstream | 32453 | 17308046 ~ 17308308 (-) |
| G2158999 | NA | non-coding | downstream | 43993 | 17296522 ~ 17296768 (-) |
| G2158990 | NA | non-coding | downstream | 54753 | 17285804 ~ 17286008 (-) |
| G2158985 | NA | non-coding | downstream | 59139 | 17281302 ~ 17281622 (-) |
| G2159061 | vps29 | non-coding | upstream | 21452 | 17404925 ~ 17405521 (-) |
| G2159064 | NA | non-coding | upstream | 29109 | 17412582 ~ 17413387 (-) |
| G2158954 | arpc3 | non-coding | upstream | 32589 | 17416062 ~ 17418738 (-) |
| G2159711 | NA | non-coding | upstream | 707836 | 18091309 ~ 18091633 (-) |
| G2159735 | NA | non-coding | upstream | 728097 | 18111570 ~ 18111820 (-) |
| G2158111 | akna | other | downstream | 694164 | 16643681 ~ 16646597 (-) |
| G2158088 | LOC100136012 | other | downstream | 732755 | 16607625 ~ 16608006 (-) |
| G2157743 | NA | other | downstream | 917340 | 16421677 ~ 16423421 (-) |
| G2157715 | NA | other | downstream | 954716 | 16381190 ~ 16386045 (-) |
| G2155120 | NA | other | downstream | 3109755 | 14227820 ~ 14231006 (-) |
| LOC110509757 | LOC106563370 | other | upstream | 1892795 | 19275539 ~ 19277044 (-) |
| G2162005 | NA | other | upstream | 2601072 | 19984545 ~ 19984779 (-) |
| G2162127 | NA | other | upstream | 2699672 | 20083145 ~ 20083618 (-) |
| LOC110509788 | LOC106563294 | other | upstream | 2704757 | 20088225 ~ 20093695 (-) |
| G2162405 | LOC106563289 | other | upstream | 2925716 | 20309189 ~ 20309802 (-) |
