LOC110509734 (ub2g1)


Basic Information

Item Value
gene id LOC110509734
gene name ub2g1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 17419279 ~ 17425513 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590806.2
CCTGATGTAGGCttgcacctccctctctcttgacgAGTAGGGCGCATGCGGTGTATGGGGATGTTGCTAGCCTAGCTGTCGGAAGCTGTGCCTCTCTGTGTGAAACGATCAACTAATAAGGCCTTGTTGAAACATCGGTAACAAGCtagctaggtctctctctctctctccaattcttTGTTCTGTTATATTTTATGTTAGAGGCAGTTCAGGTCGTTGTCTTTATAGGTAGGCTAATCCACATAAAATGACCGATCAATCATCCCTGTTGCTTCGAAAACAACTGGCAGAGCTCAACAAGAACCCTGTGGAGGGATTTTCTGCCGGTCTCATAGACGATGATAACATCCATCAGTGGGAGGTGGTTGTTATTGGCCCTCAAGATACATTATTCGAGGGTGGTTTCTTTAAAGCCTACTTGACCTTTCCCCTTGACTACCCACATAGGCCTCCGAAGATGAAGTTCATCACAGAAATATGGCATCCCAATGTTGCAAAGAATGGTGACGTGTGTATCTCCATCCTTCACGAGCCCGGAGAGGACAAGTTTGGCTATGAGAAGCCTGAGGAGCGCTGGCTGCCCATTCACACTGTAGAGACCATCATGATCAGTGTCATCTCCATGCTGGCCGACCCGAACGGCGACTCACCCGCCAATGTGGACGCAGCCAAAGAATGGAGAGAGGATCCTTGTGGAGAGTTCAAGAGGAAGGTGGCTCGCTGTGTACGAAAGAGTCAGGAGATGGCGTTTGACTAGGCTCCACTCCCCCACCATTGCCACACACCCActAGAATTTTAACATCGGGAGATCGATCATGTcactcttcaataaagacttTTGCACCCGTGCTCTGCTCTTAGGAAGATGTGGAATAAAAAGCCAGCCCTTTTTCTTTAGTTGTAAATAGGGTTGTCTTGTTTCTTCTGTGGATGTATGGAGGAAAAAACATCCCCTCATACTTATTGCCCAGTTCTCACCTTAGACGTATTTATTTAAATGAGAATTATGACAACTCAAGATGCATGTTTTTGTTTTGAAGAGCTTCTTTATTTTCAACCTGCCACTGAGCCATCTACTTTTGACTTGTCTCTTATGCAATTGTGGTCAATGAAGAGATACCAACCAACAATGGCTATCGTTGCCCCCGTTCTTTACCTATGGAAGCCCATTCCTTCCAAAGTCCTTTCTCTCAAAAGGGTTAATACACTCTGCTGCCTTAAGTTGTTTCCCTGTGAGCTAAGGAAACTGTCTCCCGTGAtgtctgttttcttccatttttgATCAATCATTTTTTGGGGATAAACAAACCTAAGAATATTAGCATGaggaaaataatattttttgtaataaaGATCACAGCTCTAATTGTATGTAAATATTATGTACTGTATCATAGCTCAAGTTATGTCTCTTGGTTTTCCCCTTCATGTGAAGTTTGTATACTTGAGTTTCCTTTCTAGGATATTTTTCAGGGACGTGTGTTCAGTGTCGTCTATCCTTGTGTGAATAATTATTTAAGCTTTGGTCACCTGTGAACATCTACAGAAAGAGAAATCACATTTCAGATGGTTGTCTTTTGTTTAAAAGTAGTTTGTGTAGTCTCAAGAATGTGAATAAGGTTAAGCCAGTTCTGGTTGAATGTCCACACCAGTATTGCCATTTTCACCTGTGGAAGCAGATTACACTAGCCCTTTGCAACAGCACAATTTCTATCTACGAGGAGATGCTTTTGAGTCTTACGCAAGTTATTCATGCAATGCAAAGGATCAAAATAATGAAAGTGGTGATGAATTGTTAGAACAAGCAATAAGACTTGTAGCTCGATAGTTCCAATAGTCATTCACCTGTGTGGAGTGAAGACTGGCATGAGTTCTGAAATCACAGGTTTTTACACCcacattgtttaacttgagtccaATAAAGTTTTTAAAA

Function

NR:

description
PREDICTED: ubiquitin-conjugating enzyme E2 G1 isoform X1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016881 acid-amino acid ligase activity molecular_function

KEGG:

id description
K10575 UBE2G1, UBC7; ubiquitin-conjugating enzyme E2 G1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590806.2 True 1934 mRNA 0.42 6 17419279 17425513

Neighbor

gene id symbol gene type direction distance location
LOC110509730 LOC106563153 coding downstream 35806 17340761 ~ 17383473 (-)
LOC110509728 LOC106566295 coding downstream 84219 17204035 ~ 17335060 (-)
specc1lb LOC106563144 coding downstream 218487 17170684 ~ 17200792 (-)
adora2ab LOC106563117 coding downstream 270020 17144252 ~ 17149259 (-)
LOC110509725 LOC106563120 coding downstream 279669 17136250 ~ 17139610 (-)
LOC110509735 LOC106563157 coding upstream 2892 17428405 ~ 17477564 (-)
LOC110509737 LOC106563158 coding upstream 91576 17517089 ~ 17597551 (-)
LOC110509738 LOC106563159 coding upstream 250919 17676432 ~ 17800749 (-)
LOC110509743 LOC106563163 coding upstream 1072419 18497932 ~ 18722649 (-)
LOC110509746 LOC106563166 coding upstream 1361333 18786846 ~ 18804561 (-)
G2158954 arpc3 non-coding downstream 541 17416062 ~ 17418738 (-)
G2159064 NA non-coding downstream 5892 17412582 ~ 17413387 (-)
G2159061 vps29 non-coding downstream 13758 17404925 ~ 17405521 (-)
G2159013 NA non-coding downstream 109528 17309535 ~ 17309751 (-)
G2159011 NA non-coding downstream 110971 17308046 ~ 17308308 (-)
G2159711 NA non-coding upstream 665796 18091309 ~ 18091633 (-)
G2159735 NA non-coding upstream 686057 18111570 ~ 18111820 (-)
G2159759 NA non-coding upstream 705012 18130525 ~ 18130733 (-)
G2159764 NA non-coding upstream 707717 18133230 ~ 18133563 (-)
G2159779 NA non-coding upstream 717294 18142807 ~ 18143256 (-)
G2158111 akna other downstream 772682 16643681 ~ 16646597 (-)
G2158088 LOC100136012 other downstream 811273 16607625 ~ 16608006 (-)
G2157743 NA other downstream 995858 16421677 ~ 16423421 (-)
G2157715 NA other downstream 1033234 16381190 ~ 16386045 (-)
G2155120 NA other downstream 3188273 14227820 ~ 14231006 (-)
LOC110509757 LOC106563370 other upstream 1850755 19275539 ~ 19277044 (-)
G2162005 NA other upstream 2559032 19984545 ~ 19984779 (-)
G2162127 NA other upstream 2657632 20083145 ~ 20083618 (-)
LOC110509788 LOC106563294 other upstream 2662717 20088225 ~ 20093695 (-)
G2162405 LOC106563289 other upstream 2883676 20309189 ~ 20309802 (-)

Expression


Co-expression Network