LOC110509738 (LOC106563159)


Basic Information

Item Value
gene id LOC110509738
gene name LOC106563159
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 17676432 ~ 17800749 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036967198.1
TAAAGCATATTTACTAACTTTTCCAACATGGCTGCACATGttagatattttttttgtgaGTATGTTTATTGTGGCATTTCGCACCTCTTTTTTTAAAGAAGAAAGAAAGACTTTGTAGTACGACAATAATTAAACGATAGTGATATATCCTATCTAACGTTAGTTAGCGCACTAGCTTTCTTTTACGTGTTTTCACGTGCTAATTTGGAATGTATCGGCGAGGCGGGGGCAAGAGGGACCACAACAACAAGACGGTGAAGAAGAATGAGAGCGACAGCAAAAAATATGCCGAGCTTTTGGTGTTCGGCTATGCCTGCAAGCTGTTCCGGGACGACGAGAGGGCTCACTTCCACGAGCAGGGCAAACAGCTCATACCATGGATGGGGGACAAGAACATCCTGATTGATAGGTATGATGGGCGTGGTCACTTACATGACCTCTCGGAGTACGACGCAGGCTCGTGGAACAGAGACTACCAGCTGTCCGAGGAGGAGGCCAGGATCGAGGCCCTGTGTGATGAGGAGCGGTACCTGGCCATGCACACAGACCTGCTGGAGGAAGAAGCCAGACAAGAGGAAGAATACAAGCGTTTGAGTGAAGCTCTCGCAGATGAAGGCACCTATAACTCAGTGGGCTTCCGCTACAGTGCAGACTACTACGACCCTTCTCAACCcactgaggaagaggaggccaACAGGGAGACTGAAGAAGCAGAGCCGCAGGAGAGCGAGGAACCCTACGTGGCACCCCCGGGCCTGGCAATCCCCCCCGATGTGGAGCTGCCAGCGACCACCAAAACCCATGCCATCATTGAGAGGACCGCCAACTTTGTGTGCCAGCAGGGGGCCCAGTTTGAGATTGTTTTGAAAGCCAAACAGTCTGGCAACTCCCAATTTGACTTCCTGAACTTCGAACACTACCTGAACCCCTACTACAAACACATCCTGAAGGCCATGAAGGAGGGCCGCTACACCCCTGCATCCGACAAGCAGGACTCGCAGGAGTCTGATGATTCTGACGATGATGGGGATGGGAACTACCTCCACCCCAGCCTGTTTGCTCCTAAGAAGAGTTCTCGCCTTGAGGAGCTGATGAAGCCCCTCCAAGTCATGGACCCAGACCATCCACTGGCAGCGCTGATCCGGAAAACCCAGCAGGAACGTAACGgagccgctgctgctgctgccgccATCATGGCAACCAAGCCAGAGGAAGTACCCGCAGAGCCAGCTGTGCCCGCCACATCCGCAGAGTACATCGCTGACCCTAACGTGGCAGCGATGTACTATGGGTACTGCATGCTTCCTGATGGGACCTACTGCCTGGCCCCGCCCCCCCCTGGGATCGATGCCAACGGCTACTACAGCTCCCTGCCCTCTGGCAGAATGTTGGCTCCACCCTCTTACTCTGGAACCCCGCCTCCTCCAGGGACCACGCCCCCTGCACCTCCTGAGCCATCGACACGGATCATCTACACAGCACCTCCGACTACATTTCCCATCATCCCACCACCAACTCCAGTTCCCAGCCAGGTCCCAGTCTGCCTCTCAACCCCTTCTCCTCCTGCCCCTGTTATTCCTGCTGCTGTCATACCAGAGACAAGTTCGCGGCCCCAGGCTCCCGTTGCCGTGGCGGCCCCGGTTGCTGTGGCAGCGCCAGCCATCATCCCTCCGCCCCCTGACATCCAACCGGTTATTGACAAGCTGGCTGAGTACGTGGCCAGGAACGGTGTCAAGTTTGAGACCAGCGTCCGCGCCAAGAATGACCCGCGGTTTGACTTCTTGCAGTCCTGGAACCAGTACAACACCTATTATGAGTTCAAGAAGAATTACTTCATGCAGAAAGAGGGAATCAGCCTgccacagCATGGCTCTTCAGACGGCCTGGGCCCAGCGGAGGGGGAGGCAGACAGGGGCAGCGTTGGTAACTGTCCCTCTGACAAACAGCTGAATGAAGGCAAGCCAATTAAAGTGCCCTTTGCGCCGATCTGCTTCGCCATCAAAGCCAAAGAGAACGACATGCTACCGCTGGAGAAAAACCGTGTACGGCTGGACGACGACTCAGATGATGACCCGGACAAGTTGCTGGGCGAGGAGGGTCTGGAGGCCCTGCTGGAGGGGGCGGAGATGGTCGTCAGAGCGGTCAGTGCGACCCCCGAGGAGAAGAGACCCACTCTCACCCTGGAGGAGCTGGAGGCtaaacaagCCAAGCAGAAGCTAGAGGACCGTCTGGCTGCAGCCGCCAGGGAGAAGCTGGCCCAGGCCTCAAAGGAGTCCAAGGAGAAGCAGCTGCAggcggagaggaagagaaaggcagCGCTGTTCCTCCAGACCCTACGTAACCCCCTTACTGGAGAGCCTGAGACCAGACGTCCTGACAAGACCACCGCCATGCCTGAGccACAGCTGCCAGAGGTCCCAGTGGCCCCCGTTGTCTCAGCCCCCCCTCCTCTGGCTTCTAGAGCACATGTGTACCCAGCTGATCAAAGACCACATGACGTCAGCGCCTTCAAAAGCAAAgagcccccctcctcctcttccaccctcctgctaccctcttcctcctccacctccagacGACCGGAGAAGAACCGGGACAGAGAGAAGGgcgacagagagaagaagaagaagaaacgcAAGAAGCGGTCACGGTCGAGATCGCGCTCCCGGCCTAAAACCAAGCACGCCCTGCCAAGCGCGTACAGAATGGTCCGCAGGTCTAGgtCTCGCTCCAAGTCCCCTGGGAGGAGGGACCGAAGGGCTCACTCGTCCGAGAGGAGACGTGAGGAGAGGGAGCGCTACGGCACTGCCGCCTATCGCGTTGGCATCAGCCCCGCTCTGCCCAGGAGGCACTCCAGATCCAGgTCCCCTcatgagaagaggaagaggaagagttcTAAGGGCAAGCTCCCAACCAAGGGCTCTTCCTGTTCCCCCTCCTCGTACCCCAGAGGAGCCAAGAAGTCCCCCAGCGCCTCCCCTCCCACCAGCCCCACTTCCAGCCTCTCCAGggacggctcgcaggagaaagagaaacaAGTGTCCACAGCCATCGTCTCCTCCATGCAGTCCAAAATCACTCAGGATCTGATGGCCAAAGTACGTGCCATGCTGGCTTCCTCGAAGACCTCCCAGCCCAACACTCCCTGAAGAGGCGTGGCTTTCTAGCAGCTGGTTGGAAAAGGGGTGGAGCTTTACCACGTCTGCCTCTCCATGACGACAGCCTCCAGCTAAAGGCCCTCGGCCAGTCAGCAGGCAGAGTCTTTGCGCGCAACCGCGTTTTGCCTCTTCAGCTTTTATCTTCctctcattttttttatttgactttgATACTTAATTGGTTGAGTTTATCTACAGTGTATTCTGAACGGCAGTAGATGTAAAGGATTTTCTGCAACTGAGAGCAGTGTAGATTAGCTCCTAAATCAACTAAATGGGTCTGTTCTACCTGTCGAGAGAGAGCCTGCGTCACAGCAATGGTCACGTAGCCTGAGAAAGTTTGGACACCTCTGTTCCCGACATATGTTATTCACACGAATAAAGACAACAGAGCATCAAAGCGCGGAAATAATTCATGCAGAACCTTGCATCTTTCAACAAcgacaaaaatatataattttctggaaagTGATGGAGATCGTTGCGACATAATTGCTCAGCTGCCAGAGGGCCTAAAGCATATCCTTCTGTGAAGGATTGTTACGTTTATTTCTttctcacactttctctctccttctccttttgttttcctctttctctccattgctCTTTCTCTTACTTTGCCAGGTCAGTTTTAAGGCTGGGGTCTTTGGTTGTCAGTCCCTGTTGTCACTCAGTTCCAGTGTGTGGTCTTCAATTTGTGTTTCTAAGTTTGTACAGGGCTGATTGGGAGTCTGCTTTCTAACACAAACTATCAATAAAGTTTGAACGATGATGTA
>XM_036967199.1
TAAAGCATATTTACTAACTTTTCCAACATGGCTGCACATGttagatattttttttgtgaGTATGTTTATTGTGGCATTTCGCACCTCTTTTTTTAAAGAAGAAAGAAAGACTTTGTAGTACGACAATAATTAAACGATAGTGATATATCCTATCTAACGTTAGTTAGCGCACTAGCTTTCTTTTACGTGTTTTCACGTGCTAATTTGGAATGTATCGGCGAGGCGGGGGCAAGAGGGACCACAACAACAAGACGGTGAAGAAGAATGAGAGCGACAGCAAAAAATATGCCGAGCTTTTGGTGTTCGGCTATGCCTGCAAGCTGTTCCGGGACGACGAGAGGGCTCACTTCCACGAGCAGGGCAAACAGCTCATACCATGGATGGGGGACAAGAACATCCTGATTGATAGGTATGATGGGCGTGGTCACTTACATGACCTCTCGGAGTACGACGCAGGCTCGTGGAACAGAGACTACCAGCTGTCCGAGGAGGAGGCCAGGATCGAGGCCCTGTGTGATGAGGAGCGGTACCTGGCCATGCACACAGACCTGCTGGAGGAAGAAGCCAGACAAGAGGAAGAATACAAGCGTTTGAGTGAAGCTCTCGCAGATGAAGGCACCTATAACTCAGTGGGCTTCCGCTACAGTGCAGACTACTACGACCCTTCTCAACCcactgaggaagaggaggccaACAGGGAGACTGAAGCAGAGCCGCAGGAGAGCGAGGAACCCTACGTGGCACCCCCGGGCCTGGCAATCCCCCCCGATGTGGAGCTGCCAGCGACCACCAAAACCCATGCCATCATTGAGAGGACCGCCAACTTTGTGTGCCAGCAGGGGGCCCAGTTTGAGATTGTTTTGAAAGCCAAACAGTCTGGCAACTCCCAATTTGACTTCCTGAACTTCGAACACTACCTGAACCCCTACTACAAACACATCCTGAAGGCCATGAAGGAGGGCCGCTACACCCCTGCATCCGACAAGCAGGACTCGCAGGAGTCTGATGATTCTGACGATGATGGGGATGGGAACTACCTCCACCCCAGCCTGTTTGCTCCTAAGAAGAGTTCTCGCCTTGAGGAGCTGATGAAGCCCCTCCAAGTCATGGACCCAGACCATCCACTGGCAGCGCTGATCCGGAAAACCCAGCAGGAACGTAACGgagccgctgctgctgctgccgccATCATGGCAACCAAGCCAGAGGAAGTACCCGCAGAGCCAGCTGTGCCCGCCACATCCGCAGAGTACATCGCTGACCCTAACGTGGCAGCGATGTACTATGGGTACTGCATGCTTCCTGATGGGACCTACTGCCTGGCCCCGCCCCCCCCTGGGATCGATGCCAACGGCTACTACAGCTCCCTGCCCTCTGGCAGAATGTTGGCTCCACCCTCTTACTCTGGAACCCCGCCTCCTCCAGGGACCACGCCCCCTGCACCTCCTGAGCCATCGACACGGATCATCTACACAGCACCTCCGACTACATTTCCCATCATCCCACCACCAACTCCAGTTCCCAGCCAGGTCCCAGTCTGCCTCTCAACCCCTTCTCCTCCTGCCCCTGTTATTCCTGCTGCTGTCATACCAGAGACAAGTTCGCGGCCCCAGGCTCCCGTTGCCGTGGCGGCCCCGGTTGCTGTGGCAGCGCCAGCCATCATCCCTCCGCCCCCTGACATCCAACCGGTTATTGACAAGCTGGCTGAGTACGTGGCCAGGAACGGTGTCAAGTTTGAGACCAGCGTCCGCGCCAAGAATGACCCGCGGTTTGACTTCTTGCAGTCCTGGAACCAGTACAACACCTATTATGAGTTCAAGAAGAATTACTTCATGCAGAAAGAGGGAATCAGCCTgccacagCATGGCTCTTCAGACGGCCTGGGCCCAGCGGAGGGGGAGGCAGACAGGGGCAGCGTTGGTAACTGTCCCTCTGACAAACAGCTGAATGAAGGCAAGCCAATTAAAGTGCCCTTTGCGCCGATCTGCTTCGCCATCAAAGCCAAAGAGAACGACATGCTACCGCTGGAGAAAAACCGTGTACGGCTGGACGACGACTCAGATGATGACCCGGACAAGTTGCTGGGCGAGGAGGGTCTGGAGGCCCTGCTGGAGGGGGCGGAGATGGTCGTCAGAGCGGTCAGTGCGACCCCCGAGGAGAAGAGACCCACTCTCACCCTGGAGGAGCTGGAGGCtaaacaagCCAAGCAGAAGCTAGAGGACCGTCTGGCTGCAGCCGCCAGGGAGAAGCTGGCCCAGGCCTCAAAGGAGTCCAAGGAGAAGCAGCTGCAggcggagaggaagagaaaggcagCGCTGTTCCTCCAGACCCTACGTAACCCCCTTACTGGAGAGCCTGAGACCAGACGTCCTGACAAGACCACCGCCATGCCTGAGccACAGCTGCCAGAGGTCCCAGTGGCCCCCGTTGTCTCAGCCCCCCCTCCTCTGGCTTCTAGAGCACATGTGTACCCAGCTGATCAAAGACCACATGACGTCAGCGCCTTCAAAAGCAAAgagcccccctcctcctcttccaccctcctgctaccctcttcctcctccacctccagacGACCGGAGAAGAACCGGGACAGAGAGAAGGgcgacagagagaagaagaagaagaaacgcAAGAAGCGGTCACGGTCGAGATCGCGCTCCCGGCCTAAAACCAAGCACGCCCTGCCAAGCGCGTACAGAATGGTCCGCAGGTCTAGgtCTCGCTCCAAGTCCCCTGGGAGGAGGGACCGAAGGGCTCACTCGTCCGAGAGGAGACGTGAGGAGAGGGAGCGCTACGGCACTGCCGCCTATCGCGTTGGCATCAGCCCCGCTCTGCCCAGGAGGCACTCCAGATCCAGgTCCCCTcatgagaagaggaagaggaagagttcTAAGGGCAAGCTCCCAACCAAGGGCTCTTCCTGTTCCCCCTCCTCGTACCCCAGAGGAGCCAAGAAGTCCCCCAGCGCCTCCCCTCCCACCAGCCCCACTTCCAGCCTCTCCAGggacggctcgcaggagaaagagaaacaAGTGTCCACAGCCATCGTCTCCTCCATGCAGTCCAAAATCACTCAGGATCTGATGGCCAAAGTACGTGCCATGCTGGCTTCCTCGAAGACCTCCCAGCCCAACACTCCCTGAAGAGGCGTGGCTTTCTAGCAGCTGGTTGGAAAAGGGGTGGAGCTTTACCACGTCTGCCTCTCCATGACGACAGCCTCCAGCTAAAGGCCCTCGGCCAGTCAGCAGGCAGAGTCTTTGCGCGCAACCGCGTTTTGCCTCTTCAGCTTTTATCTTCctctcattttttttatttgactttgATACTTAATTGGTTGAGTTTATCTACAGTGTATTCTGAACGGCAGTAGATGTAAAGGATTTTCTGCAACTGAGAGCAGTGTAGATTAGCTCCTAAATCAACTAAATGGGTCTGTTCTACCTGTCGAGAGAGAGCCTGCGTCACAGCAATGGTCACGTAGCCTGAGAAAGTTTGGACACCTCTGTTCCCGACATATGTTATTCACACGAATAAAGACAACAGAGCATCAAAGCGCGGAAATAATTCATGCAGAACCTTGCATCTTTCAACAAcgacaaaaatatataattttctggaaagTGATGGAGATCGTTGCGACATAATTGCTCAGCTGCCAGAGGGCCTAAAGCATATCCTTCTGTGAAGGATTGTTACGTTTATTTCTttctcacactttctctctccttctccttttgttttcctctttctctccattgctCTTTCTCTTACTTTGCCAGGTCAGTTTTAAGGCTGGGGTCTTTGGTTGTCAGTCCCTGTTGTCACTCAGTTCCAGTGTGTGGTCTTCAATTTGTGTTTCTAAGTTTGTACAGGGCTGATTGGGAGTCTGCTTTCTAACACAAACTATCAATAAAGTTTGAACGATGATGTA

Function

NR:

description
splicing factor, suppressor of white-apricot homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036967198.1 False 3937 mRNA 0.54 18 17676432 17800749
XM_036967199.1 True 3934 mRNA 0.54 18 17676432 17800749

Neighbor

gene id symbol gene type direction distance location
LOC110509737 LOC106563158 coding downstream 78881 17517089 ~ 17597551 (-)
LOC110509735 LOC106563157 coding downstream 198868 17428405 ~ 17477564 (-)
LOC110509734 ub2g1 coding downstream 250919 17419279 ~ 17425513 (-)
LOC110509730 LOC106563153 coding downstream 292959 17340761 ~ 17383473 (-)
LOC110509728 LOC106566295 coding downstream 341372 17204035 ~ 17335060 (-)
LOC110509743 LOC106563163 coding upstream 697183 18497932 ~ 18722649 (-)
LOC110509746 LOC106563166 coding upstream 986097 18786846 ~ 18804561 (-)
LOC118945262 LOC106563169 coding upstream 1033664 18834413 ~ 18842206 (-)
LOC110509748 LOC100194644 coding upstream 1041621 18842370 ~ 18848232 (-)
nefma nfm coding upstream 1061201 18861950 ~ 18867753 (-)
G2158954 arpc3 non-coding downstream 257694 17416062 ~ 17418738 (-)
G2159064 NA non-coding downstream 263045 17412582 ~ 17413387 (-)
G2159061 vps29 non-coding downstream 270911 17404925 ~ 17405521 (-)
G2159013 NA non-coding downstream 366681 17309535 ~ 17309751 (-)
G2159011 NA non-coding downstream 368124 17308046 ~ 17308308 (-)
G2159711 NA non-coding upstream 290560 18091309 ~ 18091633 (-)
G2159735 NA non-coding upstream 310821 18111570 ~ 18111820 (-)
G2159759 NA non-coding upstream 329776 18130525 ~ 18130733 (-)
G2159764 NA non-coding upstream 332481 18133230 ~ 18133563 (-)
G2159779 NA non-coding upstream 342058 18142807 ~ 18143256 (-)
G2158111 akna other downstream 1029835 16643681 ~ 16646597 (-)
G2158088 LOC100136012 other downstream 1068426 16607625 ~ 16608006 (-)
G2157743 NA other downstream 1253011 16421677 ~ 16423421 (-)
G2157715 NA other downstream 1290387 16381190 ~ 16386045 (-)
G2155120 NA other downstream 3445426 14227820 ~ 14231006 (-)
LOC110509757 LOC106563370 other upstream 1475519 19275539 ~ 19277044 (-)
G2162005 NA other upstream 2183796 19984545 ~ 19984779 (-)
G2162127 NA other upstream 2282396 20083145 ~ 20083618 (-)
LOC110509788 LOC106563294 other upstream 2287481 20088225 ~ 20093695 (-)
G2162405 LOC106563289 other upstream 2508440 20309189 ~ 20309802 (-)

Expression


Co-expression Network