LOC110509739 (LOC106563160)


Basic Information

Item Value
gene id LOC110509739
gene name LOC106563160
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 18275943 ~ 18282836 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036968113.1
TGGTGACTTGATGAAAGATATTGGTAGCATCACGAGGCTTAATTCTGGCACTTATCACCCCCTATAGTCACCTGTAGAGCTCACTGCTGTTGACGTCAGTTGTTGAAGGGCGTGATGAGGGACCGCCTGGGCGATTTGACAGCGAACAGCAACAATAACCCTTTTAAtgtggatgatgatgatggcacCATCACAGTGGATAACAATTCCCACAGGGATGACTTCTTGAAACAGGTGGGGGAGGTGCGACGCCTCATCGATAAGATCTCTTCCCAGGTAGATGAAGTGGTGAAGAAACACAGCGCCATCCTCTCTGCCCCCAACCCTGAGGAGAGCACCAAAGATGAACTGGAGCAGCTCACCAATGAAATCAAGAGGAATGCCAACACAGTGCGGGCCAAGTTAAAAACCATGCAGGACAGCCTGCCTGAGGATGAGAATGCAAACACAGCCTCTGTGGACCAGCGCATCCAGACAAACCAGCACACAAATCTGATGCGCTGGTTTGTGGATGTCATGACGGTGTACAACGAGACCCAGATGTCCTTCAGGGAGAGGTGCAAAGGACGGATTCAGAGACAGCTGGAGATCACTGGGAAAGTGACCACTgatgaggagctggaggagattCTGCACAGTGAAAATCCTGCCATCTTCACCTCTGATATCATCTCCGACTCCCAGATCACGCGCCAGGCTCTGAATGAGATCGAGTCTCGCCATAAGGACATCATCCGCCTGGAGTCCAGCATCAGGGAGCTCCACGAGATGTTTGTTGACATGGCCATGCTGGTGGAGACTCAGGGGGAGATGATCAACAACATAGAGAAGAACGTGAGCAGTGCAGCAGAGTACATCGGCGTGGCCAAAGTGGAAACCAAGAAGGCAGTGCGGTACCAGAAAGCGGCGCGCAGGGTAAGACTTTTCCCCCGTTTCCCCAGCCTTTTCAAGAGCAACACCACCGCCGTCCCCAACGAACCAAAACCCACTGCTGTCAAATGAGCCACTATAACCATAGCTTGTCCTGCTGCCACTGAACATGCCATTCAAGTTAGCACTGTGAATGAAGCTAATGTCCCGTTCAAGGTCAGCCAATCATTTGTAACGCTGTGAAGCTAATGTCGCACGCCTGAAGCTTTTATTAGATTTATCACAGAGAACCTAATCTCTCAGGAGTCTAGCGTCACATTTGATGAAGGGAAGATGGTATCACACCATAGAGCTTCCCGATAGGTTAAGCACAGAACTGCTATGCAAACTGCCTGTAGAAGTGTACAAACTGTGAAATGTTAGCCATGGCCCTTGCCTCTGTTTGTGTGATGTTTGTGCTGTTTACCTGTAATGACCGTTGGAAATAAATGTGACTTGAAATTAAAA
>XM_021590815.2
AATAGAACTCCACTCATGCAGGCGTGGCCAAACGTCTCGCGGGTCTCTGAAAAGCGCTTTTTTTGTTGAATGCGAACTATTTTTAAAATCGACAAACTGCTAAAATGAATAACGGTTTACTATTATCGTGAACATTTAAACAAGAGAGGAATTTATATGGTATTTAAGTCTACTTACACATGCTTTGAACAAATTAGTTGTTGAAGGGCGTGATGAGGGACCGCCTGGGCGATTTGACAGCGAACAGCAACAATAACCCTTTTAAtgtggatgatgatgatggcacCATCACAGTGGATAACAATTCCCACAGGGATGACTTCTTGAAACAGGTGGGGGAGGTGCGACGCCTCATCGATAAGATCTCTTCCCAGGTAGATGAAGTGGTGAAGAAACACAGCGCCATCCTCTCTGCCCCCAACCCTGAGGAGAGCACCAAAGATGAACTGGAGCAGCTCACCAATGAAATCAAGAGGAATGCCAACACAGTGCGGGCCAAGTTAAAAACCATGCAGGACAGCCTGCCTGAGGATGAGAATGCAAACACAGCCTCTGTGGACCAGCGCATCCAGACAAACCAGCACACAAATCTGATGCGCTGGTTTGTGGATGTCATGACGGTGTACAACGAGACCCAGATGTCCTTCAGGGAGAGGTGCAAAGGACGGATTCAGAGACAGCTGGAGATCACTGGGAAAGTGACCACTgatgaggagctggaggagattCTGCACAGTGAAAATCCTGCCATCTTCACCTCTGATATCATCTCCGACTCCCAGATCACGCGCCAGGCTCTGAATGAGATCGAGTCTCGCCATAAGGACATCATCCGCCTGGAGTCCAGCATCAGGGAGCTCCACGAGATGTTTGTTGACATGGCCATGCTGGTGGAGACTCAGGGGGAGATGATCAACAACATAGAGAAGAACGTGAGCAGTGCAGCAGAGTACATCGGCGTGGCCAAAGTGGAAACCAAGAAGGCAGTGCGGTACCAGAAAGCGGCGCGCAGGAAGTATGTCATAATTGCCATAGTCGTGGTGATCCTGCTTGCTGTAATCGCACTTATCGTTGGTTTGTCTCTGGGTCTAAAACTGCCCTCAACCGCACAGCCTTAGCTCTTCTTTTTCACAGAAAATGCTTTATCTTGCTATTGGTGGGGTTGTTAGTGTCATCGTTTTAGCCATTATTATGGGGTTGAGTGTCTCATAGTGATTTGTCCAAGCCCCCCCTCAAAAAAACAACCTTAAACAAAAACGATCAATATATGATCAGTCTCAACCTCATTCTTCCATCTGAAATATCTACCATGACCACTAATGCCTTGCTGGGTGAAGTGATTCCTCTCTCATGGAGTGAGTAAAAGCTCCAATGAGGAGTTTCTGCTGTGCATTTGAGGAAGAAGACAACTCTGCACCTGCAGTATCAACCAGAGGGTGGTGCTGAATCTCCTGTTTCACTCCTAAACCTTTTCAACCAGACATGCACTATGCACTTTTGACAggaacaaacatacacacagcatgttttactatccttgtggagaCCTAAAATTGATTTCCATTCTACTTCTCCAAACTCCTATCCTTAATTCTAAcacctaaaatagcctttgtcaTTTTGTGGGGACCTGGGAAATGTCCCCGCAAGGGAGAATTGTCCTTGTTTGACTAACCTTTTGGGGATTTTAGGTATCCATGAGAATAGATACACATAGCCTACACTCAGTTTACTTATAACCTCTGGTATTCTTTGAAATGGCATCAGTAAATCCCAGTTACATGTTTGTTTGTATTCCCTCTCCTGAATTGGTTGGATGTACTCCCTACTTGAAGATGTGTTCTATCAATGAATGTTTGACTGTTTCTTTGTGCCTCTTATTACATTTCGAGCTCCAGAGCTTTATCAAATATCTTTACACCACTGAACATTGCAAATGTATATTTTCAACTTTTGTAGAATGTATTTTTTATAGTCACCTGAACATGTATCCGATGTTACTCGTTATTTATTTGTGCTGTATTTTGTTAACAGCTGTGATAATGAACTTGATATGACATTGCTGACTGAGTGCTTGACGGAGTTGAGACAAACATCATATTGTACTACTGCACCTGTTTTAAAATATTATATTTCCATACACAAAACACTAAGCTCACAGCACAGTGGATGTAATTTAGCCAAGTGTTGCAGTTGTCAGAATTAATTTAGGAAGGTGGGAATGGTGTCAGGACACACTTCATTATGCCTGTGGTTTTCATCAAGTGCCTTACAACAAATGACTAAGTTAACCACAGCACTGTCCAAGTCTTCAAGATATGACATCACTTGTCTAAAGTGAATCCAGCTGATATGTAAAGTGTCTCTTTCAATGTTCTTTCACTTCAAAAGTATCTATGATAGCCAACCAAGAGAGAGCAAAAAtaaagcagt

Function

NR:

description
PREDICTED: syntaxin-2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036968113.1 False 1377 mRNA 0.50 10 18275943 18280978
XM_021590815.2 True 2433 mRNA 0.43 11 18276048 18282836

Neighbor

gene id symbol gene type direction distance location
arpc3 arpc3 coding upstream 856714 17416053 ~ 17419229 (+)
LOC110509733 LOC106566318 coding upstream 860004 17412561 ~ 17415939 (+)
LOC110509732 vps29 coding upstream 869638 17400243 ~ 17406305 (+)
LOC110509337 noc4l coding upstream 876519 17395850 ~ 17399424 (+)
LOC110509731 LOC106563154 coding upstream 881577 17391095 ~ 17394366 (+)
LOC110509741 LOC106563161 coding downstream 5902 18288738 ~ 18380940 (+)
si:dkey-1d7.3 LOC106563162 coding downstream 110103 18392939 ~ 18442193 (+)
LOC110509745 LOC106563165 coding downstream 483643 18766479 ~ 18783952 (+)
LOC110509747 LOC106563168 coding downstream 525976 18808812 ~ 18823742 (+)
LOC110509749 LOC106563330 coding downstream 570434 18853270 ~ 18856153 (+)
G2159829 NA non-coding upstream 94596 18181016 ~ 18181347 (+)
G2159808 NA non-coding upstream 111319 18164412 ~ 18164624 (+)
G2159795 NA non-coding upstream 119685 18156051 ~ 18156258 (+)
G2159794 NA non-coding upstream 120472 18155256 ~ 18155471 (+)
G2159791 NA non-coding upstream 122131 18153431 ~ 18153812 (+)
G2159873 NA non-coding downstream 104155 18386991 ~ 18389764 (+)
G2160139 NA non-coding downstream 163478 18446314 ~ 18446621 (+)
G2160145 NA non-coding downstream 175290 18458126 ~ 18458362 (+)
G2160306 NA non-coding downstream 412062 18694898 ~ 18695157 (+)
G2160321 NA non-coding downstream 432867 18715703 ~ 18715936 (+)
G2158499 LOC106563144 other upstream 1084815 17189344 ~ 17191128 (+)
G2157602 NA other upstream 1922278 16350717 ~ 16353665 (+)
G2155696 NA other upstream 3181994 15018627 ~ 15093949 (+)
G2154512 NA other upstream 4340124 13915670 ~ 13935819 (+)
G2154438 NA other upstream 4461973 13806013 ~ 13813970 (+)
LOC110509751 LOC106563328 other downstream 777707 18962089 ~ 19065920 (+)
LOC118945267 NA other downstream 783342 19066137 ~ 19068784 (+)
LOC110509753 LOC106563373 other downstream 853833 19136428 ~ 19138160 (+)
LOC110509766 LOC106566689 other downstream 1328053 19609602 ~ 19616511 (+)
G2161635 LOC106563312 other downstream 1458978 19741814 ~ 19752743 (+)

Expression


Co-expression Network