LOC110509748 (LOC100194644)


Basic Information

Item Value
gene id LOC110509748
gene name LOC100194644
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 18842370 ~ 18848232 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590831.2
GTGTGTGAGGAGTCGCTCTGGGCTGTTGGTCTCAGAGTGTTTGTACCATAAGGTAGGGCCGTGTCTCGTGTGTTTGGTAAAGGAATTTAAAGCAACACTGCAAGCATGACTACTGCCCATAAGTTGGTGATCGTCCGTCATGGCGAGAGTGAGTGGAACCAGTACAACAAATTTTGCGGCTGGTTTGATGCCGACCTCAGCGAGAAGGGCCTGGAAGAGGCCAAACGTGGTGCTAAGGCCATCAAGGACGCCGGAATGAAGTTTGACATCTGCCACACCTCCGTGCTGAAGCGAGCAGTCAAGACCCTGTGGACCATCCTGGAGGGCACAGACCAGATGTGGCTTCCCGTGTACCGCACATGGCGTCTGAACGAGCGCCACTACGGCGGCCTGACAGGTCTCAACAAGGCAGAGACAGCCGAGAAGCACGGAGAGGAGCAGGTCAAGATCTGGCGTCGTTCCTTCgacatcccccctccccccatggaACACGACCACGCCTTCCACAAGATCATCAGTGAATCAAGGCGCTACAAGGGCCTGAAGCCCGGTGAGCTGCCCACATGTGAGTCCCTGAAAGACACTATTGCCCGTGCCCTGCCCTACTGGAACGATGTCATCGTACCTGAGATCAAGGCTGGCAAGAATGTCATCATCGCTGCCCACGGCAACAGCCTCCGCGGAATTGTCAAGCACTTAGAGGGCATGTCAGACGCTGCCATCATGGAGTTGAACCTGCCAACAGGTATCCCCATTGTGTACGAGCTGGATGCAAACCTGAAGCCCGTCAAGCCCATGGCTTTCCTGGGAGACGCTGAGACTGTGAAGAAGGCCATGGAGGCTGTAGCTGCCCAGGGCAAAGCTAAGAAGTAAGCCAGCCTGGAGACAtcaagaggagaaagagaaaaagtgACTGTCCCTCCCCCCGCTCAAGCCTTGTCCACTcaaccaaacacacacgcacacacacacactattgtggAGTGTCACAGTCCCACTGTAGGTGTTGGTGAAGCCCTGTGTTAAGGGCACAACAGTCTGACAcaacaaataaagaaaacacctTTTTGTGTCTTTTCCTGTT

Function

NR:

description
phosphoglycerate mutase 2-like

GO:

id name namespace
GO:0006096 glycolytic process biological_process
GO:0004619 phosphoglycerate mutase activity molecular_function

KEGG:

id description
K01834 PGAM, gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590831.2 True 1084 mRNA 0.54 3 18842370 18848232

Neighbor

gene id symbol gene type direction distance location
LOC118945262 LOC106563169 coding downstream 164 18834413 ~ 18842206 (-)
LOC110509746 LOC106563166 coding downstream 37809 18786846 ~ 18804561 (-)
LOC110509743 LOC106563163 coding downstream 119721 18497932 ~ 18722649 (-)
LOC110509738 LOC106563159 coding downstream 1041621 17676432 ~ 17800749 (-)
LOC110509737 LOC106563158 coding downstream 1244819 17517089 ~ 17597551 (-)
nefma nfm coding upstream 13718 18861950 ~ 18867753 (-)
LOC110509752 LOC106563351 coding upstream 220184 19068416 ~ 19070349 (-)
LOC110509754 LOC106563372 coding upstream 303788 19152020 ~ 19153708 (-)
LOC110509755 LOC106563327 coding upstream 369111 19217343 ~ 19224878 (-)
LOC110509757 LOC106563370 coding upstream 427307 19275539 ~ 19277044 (-)
G2160590 NA non-coding downstream 107148 18734828 ~ 18735222 (-)
G2160588 NA non-coding downstream 108111 18733898 ~ 18734259 (-)
G2160563 NA non-coding downstream 136789 18705286 ~ 18705581 (-)
G2160561 NA non-coding downstream 137988 18704110 ~ 18704382 (-)
G2160557 NA non-coding downstream 146631 18695324 ~ 18695739 (-)
G2161075 LOC106566461 non-coding upstream 6764 18854996 ~ 18856145 (-)
G2161122 NA non-coding upstream 80807 18929039 ~ 19010955 (-)
G2161212 NA non-coding upstream 214113 19062345 ~ 19065914 (-)
G2161225 NA non-coding upstream 240911 19089143 ~ 19089464 (-)
G2161228 NA non-coding upstream 244850 19093082 ~ 19093356 (-)
G2158111 akna other downstream 2195773 16643681 ~ 16646597 (-)
G2158088 LOC100136012 other downstream 2234364 16607625 ~ 16608006 (-)
G2157743 NA other downstream 2418949 16421677 ~ 16423421 (-)
G2157715 NA other downstream 2456325 16381190 ~ 16386045 (-)
G2155120 NA other downstream 4611364 14227820 ~ 14231006 (-)
G2162005 NA other upstream 1136313 19984545 ~ 19984779 (-)
G2162127 NA other upstream 1234913 20083145 ~ 20083618 (-)
LOC110509788 LOC106563294 other upstream 1239998 20088225 ~ 20093695 (-)
G2162405 LOC106563289 other upstream 1460957 20309189 ~ 20309802 (-)

Expression


Co-expression Network