nefma (nfm)


Basic Information

Item Value
gene id nefma
gene name nfm
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 18861950 ~ 18867753 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590834.2
TGAGGCTAAGAATGCTGTGAGCGCCATCCACCCCGcacctgcacaaacacacacacgcacccaccccAATACTCCACCTCGCACACCTTCCCTTCCATTTGCACACGCACCCCCTTGTCTGGCCGGATGAGTTACCACCCGGTGGACACCGTAGGGAGTCCATTCAGGAGAAGCATGGATAGTAGGACAAGCTACGGCCGCTCCTCCGGCACCCCCTCCAGCGGGTTCCGCTCTCAGTCCTGGTCCCGGTCAAGCCCTAACAAGCCCTACAAGAGGAGCGTCAATATGCCTGTAGCCAGAGCGTACAGCTCCACACTCCTCAGCTCCGCCGACAGCGTTGATTTCAGTCAAACTAACGGAGACTACAAGCGTTCCAATGAGAAAGAGCAGCTCCAGGGGTTAAACGACCGCTTTGCCGGTTACATCGATAAGGTGCACTATCTGGAGCAGCAGAACAGCCAGATTGAGGAGGAGATCCAGGCGCTGAGGCAGAAGCAGGTGTCGCAGTCCCAGCTAGGCGATTTATACGACCAGGAGCTCCAGGAGCTGCGCTCCATGCTGGAGCAGATCCACCACGATAAGGCGCAGATCCAGCTCGACACAGACCACATCGAGGAGGACATCCAGAGAATTAGGGACCGCTTCGATGAGGAAGCTCGCATCAGGGATGAGACGGAAGGCATCATCCGGGCGCTAAAAAAAGATATGAACGACTCTGAGTTAGTGAAGTCGGAGTTGGAGAAGAAAGTCCAGTCACTGCAGGATGAGATTGCCTTTATCCGTAACAACCACGAGGAAGAGGTGAGCGAGCTGTTTGCCCAGGTGCAGGCGTCGCAGGTGACCATGGAGAGGAAAGACTTCCAGAAGACGGACATCACCGAGGCGCTCCGGGAGATCCGCACCCAGCTCGAGGGCCACTCCAACCAGAACCTGCAGCAGGTAGAGGACTGGTTCATGTGCCGCTATTCCAAGCTCACTGATGCTGCGGAACAAAACAAAGATGCAATAAAGTCCGCCCGTGATGAGATTGCAGACTACCGCCGCCAGCTCCAGTCCAAGACCGTGGAATTAGAATCGGTCCGGGGAACCAGGGAGTCACTGGAAAGGCAGCTGAATGACATCGAGGACCGACACAACAACGACCTGTCCAGCCTGCAGgagaccatccaccagcTGGATAATGAGCTCAAGGGCACGAAGTGGGAGATGGCGCGTCATCTGCGCGAGTACCAGGACCTGCTCAATGTCAAGATGGCTCTTGACATCGAGATTGCTGCATACAGGAAACTCCTAGAAGGTGAGGAGACCCACTTTAGCACTTTCCCTTACCGCCAAGCTGTCACCTCCTCTAAGAAGTCCAAGTCTGGGCCTCCCAAACTGAAGGTCCAGCACAAGTTTGTAGAGGAGATCATTGAGGAGACCAGGGTGGAGGATGAGAAGTCTGAAATGGACGAGGCCCTGGAAGAGATTGCCCAGGAGCTGTCTGCCGCACTGGAGGCAGAGGCAACAGAtgacagagaagaggaaggagaggataagggagaagaggaaggagaagaagcaGTGGGAcatggagaagagggagagggagagggtgactCAGAAGAGGTTGTAGCCTCCACTGAATCCCAAATGAGCTCCAGTGCCCctgctgaggaggaagaggaggacaaaaACGGTGGCgatgaagaagaagatggaggagagggtgctgaggagggagaaaaagaagaagagggtGAGAAAGAAGGTGAGGGTGAGAAGGGAGATGATGCAGAAGGTGGTGATGAGGGAGAaggaagggaagagggagaggagacagcccCAGAATCAAAGGTCTCTCCTGACAAAGAGAaggctggagagaaggaaggaagtggaggagaagaagagacagcagagggagagggagaagaagagggtgGTGATAAAGAGGAAGTTGCAAGTAGTGACAAAGGATCCAAAGATGGAGATGAGACGGATGAGAAAGATAAGAAAGGAAAGGATGAGAAAGATGACAAAACAGATGAGGCAGATGTAGCCAAGACAGAGTCTCCCAAAACAGATGCCCCCAAGAGTGAGGTCCCAAAAGCTGAGGTCCAGAAATCTGAGGCCCCAAAGGTCTCCAAGCCAGACTCCCTGAAAGCTGAATCCCCTAAGGCTGGGTCCCCTAAGTCTGAGTCACCAAAAGCTGGATCCCCCAAACATGAATCCCCCAAAGCTGGTTCCCCTAAATCTGAATCCCCAAAACCTGGCTCCCCCAAATCTGAAACCCCCAAACCTGCAGGATCCCCCAAATCTGAATCCCCCAAACCTACTGGTTCCCCCAAATCTGAATCACCCAAACCTGCAGGGTCCCCCAAATCTGAATCCCCCAAATTAGGATCCCCTAAAGCAGAGTCCCCTAAGGATGAGGCTCCCAAACCAGAAGCTCCCAAGTCAGAGGCCCCCAAGGCTGCAGAAGAGAAAGTAGACAAAAAGGGTGattcagaggaagagaaggtagaaaAGAAAGATGCAGCTTTGAGCGGAGAAGTGGAGAAGGGTGCCCCAGAGGACAAAAAGGACGATGGGAAGAAAGAGGAGACGGATGTGATCTCAAATGGAGTGGACGAGAGCCCCACCAAAGATGACCCCAACCAGAAAGATGACCTCAGCCAGAAAGATGACCCCAGCCAGAAGGTGGTCATCACCAAAACGGTGGAGACCATCACCACTGGAGAGGATGGAGCCAAGCATGTCATTAAATCAGTCACTGTCACCGAGACTGTGAAGGAGACTGAGGATATGATTCAGGAGAAGATGGTGTCCAGCAAGACGATGGAGAAACACTCTTCCAAGTCCGTCAAGGTGGTGACCGAAACCGAGTGACTGCGCTCCAACCAATCCACCCAGGAGGGTCAGGGAGGAGGACACGACGACAAGCAATCATACAGCTAGAGCGATGTAATAAAGATAACCACTCTCAAACATACAGAAAAGCAAAGAGAGAAGCCATATGATGTGACTAAGCTAAAATTTCTAAAATGCATGTTGAGTGAAGCTATAAATGAGCTTTTCTGCAGATGTGGTCAGGAAAATTTGGGAATGGGACAGATGattaattctctttctttctatctgcAGTTCACAGGAGGGCTCACGGGTGGGGGCGTCTGCATGCTAGCTCAGGGAGGGAGTCCCCTCTCtaacatgtatgtatgtatggatggatgggagAGTGATAGAAATGTATCTTCATTCAAATGACGTTTTTTGGGGGGCCCAGGTGGGAGGGTCCACTTCAGAAGTAAGCTTACTTATTATGTGACGATACCAATTGAGCCAAAAAAATACAATcgactacaatacaatacagtgaAGAAAGAGAATGACGATGGTGCAATGAACTCATGATCATGAACATACAGAACCCAAAGCAATTAACGCATAAATAACCTTGAAGAAACTCCTAGCCTTAAACATGCTTTGTATCCGTGTCTATTATGTTTACGAGTGCAATTGAAAATAAATCTGTAAATGCGCACACATACATTATTGTATGCATAGGATGGACTTGAATTTAAATACCGAACATACATGAGGTGCTACAGTTTGCAATCCCATGTCTTTACTCATCATGAATGATTTCCCAGCAGCATTTGCTCAATAAATGTCGTACTGAAATACAAAA

Function

NR:

description
neurofilament medium polypeptide-like

GO:

id name namespace
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K04573 NEF3, NF-M; neurofilament medium polypeptide (neurofilament 3)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590834.2 True 3673 mRNA 0.51 3 18861950 18867753

Neighbor

gene id symbol gene type direction distance location
LOC110509748 LOC100194644 coding downstream 13718 18842370 ~ 18848232 (-)
LOC118945262 LOC106563169 coding downstream 19744 18834413 ~ 18842206 (-)
LOC110509746 LOC106563166 coding downstream 57389 18786846 ~ 18804561 (-)
LOC110509743 LOC106563163 coding downstream 139301 18497932 ~ 18722649 (-)
LOC110509738 LOC106563159 coding downstream 1061201 17676432 ~ 17800749 (-)
LOC110509752 LOC106563351 coding upstream 200663 19068416 ~ 19070349 (-)
LOC110509754 LOC106563372 coding upstream 284267 19152020 ~ 19153708 (-)
LOC110509755 LOC106563327 coding upstream 349590 19217343 ~ 19224878 (-)
LOC110509757 LOC106563370 coding upstream 407786 19275539 ~ 19277044 (-)
LOC110509759 LOC106563326 coding upstream 490040 19307783 ~ 19409443 (-)
G2161075 LOC106566461 non-coding downstream 5805 18854996 ~ 18856145 (-)
G2160590 NA non-coding downstream 126728 18734828 ~ 18735222 (-)
G2160588 NA non-coding downstream 127691 18733898 ~ 18734259 (-)
G2160563 NA non-coding downstream 156369 18705286 ~ 18705581 (-)
G2160561 NA non-coding downstream 157568 18704110 ~ 18704382 (-)
G2161122 NA non-coding upstream 61286 18929039 ~ 19010955 (-)
G2161212 NA non-coding upstream 194592 19062345 ~ 19065914 (-)
G2161225 NA non-coding upstream 221390 19089143 ~ 19089464 (-)
G2161228 NA non-coding upstream 225329 19093082 ~ 19093356 (-)
G2161230 NA non-coding upstream 229518 19097271 ~ 19097660 (-)
G2158111 akna other downstream 2215353 16643681 ~ 16646597 (-)
G2158088 LOC100136012 other downstream 2253944 16607625 ~ 16608006 (-)
G2157743 NA other downstream 2438529 16421677 ~ 16423421 (-)
G2157715 NA other downstream 2475905 16381190 ~ 16386045 (-)
G2155120 NA other downstream 4630944 14227820 ~ 14231006 (-)
G2162005 NA other upstream 1116792 19984545 ~ 19984779 (-)
G2162127 NA other upstream 1215392 20083145 ~ 20083618 (-)
LOC110509788 LOC106563294 other upstream 1220477 20088225 ~ 20093695 (-)
G2162405 LOC106563289 other upstream 1441436 20309189 ~ 20309802 (-)

Expression


Co-expression Network