LOC110509752 (LOC106563351)


Basic Information

Item Value
gene id LOC110509752
gene name LOC106563351
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 19068416 ~ 19070349 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590836.2
GATTGTAATGAATGGGACATAGTCTGATAGTCAcagaggtgaaagagagatgATTGCACACTTTCATAATCCTAGTCTGCCCTCTGCATCATGCATTGCGAACTGATTTTCTATGTTATCTCCCCAGGTTGTCACCAGATCGGTGGGAGGTGGTCTGTCACCTTTGACATGTCCTCCATCTCTGCAAGTGACAAGGTCCAGCGCTCCGAGCTGCGGATCCGCCTGCCTGCATTCTCTGCCTCTAAGCGTGTCACTGTGGACATGTACCACTCCCAGAGATGCTCCTACTCCAGCCCGCCATGCCCAAAGGAGAGCCTCTTCCTGGGCCACCTGAAGGCAGAGCCAAGCTCTCTGACCTCCACATCCAACTGGAGGGTGTTCAACGTCACCGCCCTGCTCCACTACTACTGGCTGCACCAGAGAGGCTCCGCACCTGGCCAGGAAGTGCGCAggccagtggagagagaggaggaggagggacaagAGAGGGTCCTGCACCCCACAGCCGACCGGGTCATGGTGGTGGTCTTCTCCAAGCACCAGGCAGAGAAGCGGGCACCCACCCTCATCCACACCGCTGAGCACTCCAAGTACGTCACTCTGGACTGGGAGCGAGCTAGAGCTGGGGCCGACCCTGCTGCCAGCGTAGAGGTAGAGGGCGGAAAAGGAACCAGTCGAAGGAAAAGGCATGGGTACCACCAGAGAGCAGGAGTGGCTGGGGTGGCCCCTGGTGTGGCCcccatggaggagaggaaggacccGTTGTGCAGGAAGGTGGACATGTGGGTGGACTTTGACCAGATTGGCTGGAACGAGTGGATTGTTTACCCCAAGCGCTACAATGCCTACCGCTGTGAGGGCAGCTGCCCTACCCCAGTGGACGAGACCTTCACCCCCACCAACCATGCTTACATGCAGaGTCTGCTGAAACTTCACCACCCAGACAGGGTCCCATGCCCGTTCTGTGTGCCCACCCGCCTGGCCCCTCTGTCCATGCTGTACTATGAGAACAGTGAGGTGGAGACGCGGCACTTTGAGGGTATGGTGGTGGAGGAGTGTGGTTGCCACTAATCAGCCTGTGTGCCAACATGGACACCCCATAGGCACTTTCCATCCCAGGTAAACACCACTCTGTCCCAGCTTCTGCTCTCAATGTGCCTCAGGAAGAAAGTTGAGGTGCAAAGGTGTGGGCTTACTCTGTGAGTGTAGTCTCAAAGCTCAAGGCTTTTCTACAAAGGCAGCTACTGCTTTCAGCCATGCTACACTATGGTTGTACTGGACACTGAAGCAGACTGAACACAAGCACTGAAAAAGATCAAGAGAATCGTCAAAAAAGGATAAAAAGAATGACTTATAATACCCGTATACATGTATAATGTATAAGGACTAATGATTAAGACAAAAGCCGATACAAGGACAACGCAGACCCCTTAAGTGCTTTAATTCCTCTGTATGACCCAGTGTTGATACAgtattattttaaaatgtaaatatttcATAAGagtaatgtatttttttaaaggaCCGAAGTATGTTTGTTTAATAAATCCTCAATTAATTGCAGTCTGCTTCTATGGTACAGTATATTCTCTCAACActtaatagtagagagaacacgcaaggatgaaataaaaaaatggatgacaaagatttttttttatgttattaCTCAGCTTCAGTTCCTCTGGAAAAAATATGAAGCAGAATGTAGCCCTAGTTTTTCAATCAACACATTAGCCtacaccagggatgggcaacaggCCCTTTTGTAGGCCTACGAATACATTTTTAGGA

Function

NR:

description
nodal homolog 2-A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590836.2 True 1794 mRNA 0.50 2 19068416 19070349

Neighbor

gene id symbol gene type direction distance location
nefma nfm coding downstream 200663 18861950 ~ 18867753 (-)
LOC110509748 LOC100194644 coding downstream 220184 18842370 ~ 18848232 (-)
LOC118945262 LOC106563169 coding downstream 226210 18834413 ~ 18842206 (-)
LOC110509746 LOC106563166 coding downstream 263855 18786846 ~ 18804561 (-)
LOC110509743 LOC106563163 coding downstream 345767 18497932 ~ 18722649 (-)
LOC110509754 LOC106563372 coding upstream 81671 19152020 ~ 19153708 (-)
LOC110509755 LOC106563327 coding upstream 146994 19217343 ~ 19224878 (-)
LOC110509757 LOC106563370 coding upstream 205190 19275539 ~ 19277044 (-)
LOC110509759 LOC106563326 coding upstream 287444 19307783 ~ 19409443 (-)
LOC110509760 LOC106563325 coding upstream 432182 19502531 ~ 19508829 (-)
G2161212 NA non-coding downstream 2502 19062345 ~ 19065914 (-)
G2161122 NA non-coding downstream 57461 18929039 ~ 19010955 (-)
G2161075 LOC106566461 non-coding downstream 212271 18854996 ~ 18856145 (-)
G2160590 NA non-coding downstream 333194 18734828 ~ 18735222 (-)
G2160588 NA non-coding downstream 334157 18733898 ~ 18734259 (-)
G2161225 NA non-coding upstream 18794 19089143 ~ 19089464 (-)
G2161228 NA non-coding upstream 22733 19093082 ~ 19093356 (-)
G2161230 NA non-coding upstream 26922 19097271 ~ 19097660 (-)
G2161233 NA non-coding upstream 33287 19103636 ~ 19104053 (-)
G2161260 NA non-coding upstream 59310 19129659 ~ 19129937 (-)
G2158111 akna other downstream 2421819 16643681 ~ 16646597 (-)
G2158088 LOC100136012 other downstream 2460410 16607625 ~ 16608006 (-)
G2157743 NA other downstream 2644995 16421677 ~ 16423421 (-)
G2157715 NA other downstream 2682371 16381190 ~ 16386045 (-)
G2155120 NA other downstream 4837410 14227820 ~ 14231006 (-)
G2162005 NA other upstream 914196 19984545 ~ 19984779 (-)
G2162127 NA other upstream 1012796 20083145 ~ 20083618 (-)
LOC110509788 LOC106563294 other upstream 1017881 20088225 ~ 20093695 (-)
G2162405 LOC106563289 other upstream 1238840 20309189 ~ 20309802 (-)

Expression


Co-expression Network