LOC110509753 (LOC106563373)


Basic Information

Item Value
gene id LOC110509753
gene name LOC106563373
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 19136428 ~ 19138160 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590837.2
GTGGATTTCTTTGTTTGTGACCTGGAAAGCTACAGAGAGTTCTTACAGAGCGTCACATATCTAGGATAATCCATTGCTTatacatttttttcatttaacTCTAAGATGTAAATATTGTGTTTTGTCTGTTCCTGGAGGCTGTTGCCATAGCGATAaccaaaatatacttttttttttactagttTCCTGTATCCATGGTGACGGGGAGTTTGGTCCAATCGACTGTTGGTATTGTGTGGTGGGGAAATGCAGTGTTTCCTGCTTTTCAAAAGGGTTTCCTTCCATTGGTACAGGGTGGAATTCTTTGTTTGTGTCCTGGAAAGCTACAGTGTCCTTACGGTCTTATGGAGTATCTTTGGCCAGAACCTTAAATAAGAATTTGAGACAACATGAAGCCTTTTCAAGCAAACTGCTTTGACGCTCAGTGCTGCCTCCATCCGTCACTACCAACAGTCCTTGAGTAACAGACATTACACCACCCCTCTGGTGACCATGCAGAGGCCACAGGTTACTGGTGGCACCCCGCTACAGATCCCACCACAGCCTGTACCCAAGAACAGGCACCCCATCCTCCTGTACTCCATCCAACCCTTACTGAGGGAGACAGTTATCAGTAAGGAAGGCCACCCCCATCCCCAGCCTGACTCCCCCCAGACCTGTGGCACTCAAGGCGCAGGCCAGAGCTGCTGGAGCCTGGATGTGAGAGTGGCCGTGCTGCTGGTGATCGTGGCTGGAGCTCTGATACTGATCCTGCTCTACAGACTCCTCCAGCTGAGGCACAGACTGAGGCTGGCCCAGGCTCGACATGCCCTGGAGTACTACAGTTTCTACCACACCGCTACCTACACCCTCAAGGACCCCAGGCTGCCCCGGATACTGCCCACGAATGGAGATGCTATAGAGGTCACCCCTGTGGCCAACCCTGTGGCCCCTATTGTTGTCaccccagtaccacctccaccgGTCTCCCCACCACccactcttcccctccctccaccccccatcTTGTCTCTACCCCCTCgcctacctccccctcctctactgcctccaccccttctcccactctcttcctcactctctctccctctgcccctgcCCATCATCCACACCACCCCACCCAGCCCTCACCAGTCCTGGGGCGCCAGCTCGGATGCAGAGGTGTACTCTCGGATCGGAGCGTTCAGACCATCCAGGCTGTCCAGCCTCAGCCACTCACAGGTCATCCTGTTTGAACATTCCTCTCTCTGACATCTTCTCTGGATATTCCACATTAAGAGCATTCCGCTTTGTGGCTGCTTCTATCACTTCTGTGAGAATTCTATAACCTATTTTAATGTTCTGAATTTCAGATTTGTGTGTGGGTGTTCTCCCTTGTGATGAGTTCTTTGAGGATCATGAAAGGGATTCTTTTGAGTTCACTGTTTTATTATCCACTCACTGTTGAGTGCATAGGCTTTGACATTTCCTGTAGCTGAATTGCAAATGTCCATTTTATGGTCCTATTAAAGTCACAAAGAATTTAAAA
>TU2470204
GGGAAATGCAGTGTTTCCTGCTTTTCAAAAGGGTTTCCTTCCATTGGTACAGGGTGGAATTCTTTGTTTGTGTCCTGGAAAGCTACAGTGTCCTTACGGTCTTATGGAGTATCTTTGGCCAGAACCTTAAATAAGAATTTGAGACAACATGAAGCCTTTTCAAGCAAACTGCTTTGACGCTCAGTGCTGCCTCCATCCGTCACTACCAACAGTCCTTGAGTAACAGACATTACACCACCCCTCTGGTGACCATGCAGAGGCCACAGGTTACTGGTGGCACCCCGCTACAGATCCCACCACAGCCTGTACCCAAGAACAGGCACCCCATCCTCCTGTACTCCATCCAACCCTTACTGAGGGAGACAGTTATCAGTAAGGAAGGCCACCCCCATCCCCAGCCTGACTCCCCCCAGACCTGTGGCACTCAAGGCGCAGGCCAGAGCTGCTGGAGCCTGGATGTGAGAGTGGCCGTGCTGCTGGTGATCGTGGCTGGAGCTCTGATACTGATCCTGCTCTACAGACTCCTCCAGCTGAGGCACAGACTGAGGCTGGCCCAGGCTCGACATGCCCTGGAGTACTACAGTTTCTACCACACCGCTACCTACACCCTCAAGGACCCCAGGCTGCCCCGGATACTGCCCACGAATGGAGATGCTATAGAGGTCACCCCTGTGGCCAACCCTGTGGCCCCT

Function

NR:

description
sine oculis-binding protein homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590837.2 False 1525 mRNA 0.50 2 19136428 19138160
TU2470204 True 692 TUCP 0.55 2 19136669 19137568

Neighbor

gene id symbol gene type direction distance location
LOC118945267 NA coding upstream 68471 19066137 ~ 19068784 (+)
LOC110509751 LOC106563328 coding upstream 70508 18962089 ~ 19065920 (+)
LOC110509749 LOC106563330 coding upstream 280275 18853270 ~ 18856153 (+)
LOC110509747 LOC106563168 coding upstream 312686 18808812 ~ 18823742 (+)
LOC110509745 LOC106563165 coding upstream 352476 18766479 ~ 18783952 (+)
c6 c6 coding downstream 31908 19170068 ~ 19204571 (+)
trnac-gca-162 NA coding downstream 81204 19219364 ~ 19219434 (+)
ghr ghr2 coding downstream 88879 19227039 ~ 19249902 (+)
LOC110509338 LOC106563371 coding downstream 133464 19271624 ~ 19273362 (+)
LOC110509758 LOC106563369 coding downstream 141836 19279996 ~ 19281486 (+)
G2160818 NA non-coding upstream 5898 19130314 ~ 19130530 (+)
G2160816 NA non-coding upstream 9963 19126239 ~ 19126465 (+)
G2160798 NA non-coding upstream 33002 19103199 ~ 19103426 (+)
G2160796 NA non-coding upstream 38741 19097309 ~ 19097687 (+)
G2160789 NA non-coding upstream 47070 19089092 ~ 19089358 (+)
G2160823 NA non-coding downstream 1455 19139615 ~ 19139830 (+)
G2160827 NA non-coding downstream 6281 19144441 ~ 19144690 (+)
G2160854 NA non-coding downstream 39958 19178118 ~ 19178463 (+)
G2160856 NA non-coding downstream 43717 19181877 ~ 19182519 (+)
G2160912 NA non-coding downstream 151210 19289370 ~ 19295540 (+)
G2158499 LOC106563144 other upstream 1945300 17189344 ~ 17191128 (+)
G2157602 NA other upstream 2782763 16350717 ~ 16353665 (+)
G2155696 NA other upstream 4042479 15018627 ~ 15093949 (+)
LOC110509766 LOC106566689 other downstream 472729 19609602 ~ 19616511 (+)
G2161635 LOC106563312 other downstream 603654 19741814 ~ 19752743 (+)
G2161678 NA other downstream 657100 19795260 ~ 19797774 (+)
LOC110509811 LOC106563272 other downstream 2059758 21160126 ~ 21389662 (+)
G2163804 LOC106613263 other downstream 2462258 21600418 ~ 21601052 (+)

Expression


Co-expression Network