LOC110509755 (LOC106563327)


Basic Information

Item Value
gene id LOC110509755
gene name LOC106563327
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 19217343 ~ 19224878 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590840.2
CTGATTGTTGACTGGGCCCAGGGGGAATGACCTGTACTGCAAACCTCCAACACTCAGTTTTCTGAAAGACTGACAGACCGATTCCGAAAATGGCGTCCTTCAGAATTCTGTCAAAATCAGAGCAATTTCATAGAAATATATCTTCAGTGAGAAGACAAAAAGGAGTACTGTCTATGCAGTATGGCAAGTGTGTTCCTCACCCTCGGGTGTGTGGCTGTTGCTTCTCCACCTCCTGCCCCAGGGATGCCCGCTTCTTTACCGACCCCACAGAGGCAGTGAAAGACATCCCAGATGACTCCACTCTACTAGTCGGAGGGTTTGGTTTGTGTGGAATACCCGAGAATCTGATTGGGAGTTTATTGAAGACTGGAGTGAAAGGTATCACAGCAGTCAGCAACAACGCTGGTGTGGATAATTTTGGTCTTGGTCTGCTGCTGAGGACCAAGCAGATCAAGCGGATGATTTCCTCCTACGTTGGGGAGAATGCAGAGTTTGAGAGACAGTACCTTTCAGGGGAACTGGAGGTGGAGCTAACGCCTCAGGGTACCCTGGCAGAGAGGGTACGTGCCGGCGGTGCTGGGGTCCCTGCCTTCTTCACGCCCACTGGGTATGGCACACTGATCCAGGAGGGAGGCTCACCCATCAAATACAACACAGACGGCAGTGTGGCCATCGCTAGCAAGAAGAGAGAGGTGAGGGAGTTCAATGGCATCCACTATGTCATGGAGAGAGCCATCACAGGGGACTTTGCTTTGATCAAGGCCTGGAAAGCTGATCGAGCCGGTAACATTGTGTTCAGAAAAACAGCACGGAACTTCAACCAGCCCATGTGTAAAGCAGCTAAAGTCACCGTAGTGGAGGTAGAAGAGATTGTAGATGTGGGGACCTTTGCTCCAGAAGATATCCATGTCCCCAGCATCTATGTTGACAGGATTGTGAAGGGGGCAGTCTATGAGAAGAGGATAGAGAAGAGAACGGTCCAGAAAGGATCTATGGAGACACTCAAACCCAAGCGGAAGGCAGACCTGCTCCGAGAGAGGATCATCAGGAGGGCAGCACTGGAGTTCCAGGATGGGATGTATGCAAACCTTGGTATTGGGATCCCCATGCTGGCCAGCAACTTCATCAACTCTGACATCACTGTGCACCTACAGAGTGAGAATGGACTTCTGGGCCTGGGTCCTTATCCCACCGAAAGTGAGGTAGACCCAGACCTTATCAATGCAGGTAAAGAGGTTGTAACTGTGGTTCCTGGAGCCGCGTTTTTCTCCAGTGATGAATCATTTGCTATGATCAGGGGTGGCCACATTGACCTGACCATGTTGGGGGCCATGCAGGTGTCTAAGTATGGGGACCTGGCCAACTGGATGATCCCGGGAAAGATGGTGAAAGGAATGGGAGGGGCTATGGACCTAGTGGCAAGTGCAGGAACCAAAGTGGTGGTGACCATGGAGCATTCTGCTAAGGGGGACAAACACAAAATCCTGGAGAGTTGTACTCTCCCACTGACCGGGAAGCAGTGTGTGGATAGGATCATCACTGAAAAGGCAGTTTTTGATGTTGACAAGGCCAGGGGCCTCACTCTCATAGAGATCTGGGAGGGGCTTACTCCTGATGACATCAGAGCTTGCACTGGCACAGACTTGGCTGTGTCCCCAAATCTAAGACCAATGCAGCAGATCTGAACCCAGTGACTCCAAACCTTTCTGCAGTGCACAGAATCCTTCTTTTAACATTCCACGTGACCATAGTGCTACAAATGCATGTACACAACAACTCTGGGAGAGATGTATAAATAGAACTGCAGACTTGAAGGTATTGACAGTTAAGAGTCAGTCGGCTACAACGTGCCTGTGACTTACAATAGAATCAGCTTGCTGAAGTCTAGGTCTACAATGCAATGACTGGTCATTCCAAGCTGTATATGGTATGATCCATGGCAGATTGTTTTACTCTTAAAATGGCATAACTACA
>XM_021590839.2
GCCTGATTGTTGACTGGGCCCAGGGGGAATGACCTGTACTGCAAACCTCCAACACTCAGTTTTCTGAAAGACTGACAGACCGATTCCGAAAATGGCGTCCTTCAGAATTCTGTCAAAATCAGAGCAATTTCATAGAAATATATCTTCAGTGAGAAGACAAAAAGGAGTACTGTCTATGCAGTATGGCAAGTGTGTTCCTCACCCTCGGGTGTGTGGCTGTTGCTTCTCCACCTCCTGCCCCAGGGATGCCCGCTTCTTTACCGACCCCACAGAGGCAGTGAAAGACATCCCAGATGACTCCACTCTACTAGTCGGAGGGTTTGGTTTGTGTGGAATACCCGAGAATCTGATTGGGAGTTTATTGAAGACTGGAGTGAAAGGTATCACAGCAGTCAGCAACAACGCTGGTGTGGATAATTTTGGTCTTGGTCTGCTGCTGAGGACCAAGCAGATCAAGCGGATGATTTCCTCCTACGTTGGGGAGAATGCAGAGTTTGAGAGACAGTACCTTTCAGGGGAACTGGAGGTGGAGCTAACGCCTCAGGGTACCCTGGCAGAGAGGGTACGTGCCGGCGGTGCTGGGGTCCCTGCCTTCTTCACGCCCACTGGGTATGGCACACTGATCCAGGAGGGAGGCTCACCCATCAAATACAACACAGACGGCAGTGTGGCCATCGCTAGCAAGAAGAGAGAGGTGAGGGAGTTCAATGGCATCCACTATGTCATGGAGAGAGCCATCACAGGGGACTTTGCTTTGATCAAGGCCTGGAAAGCTGATCGAGCCGGTAACATTGTGTTCAGAAAAACAGCACGGAACTTCAACCAGCCCATGTGTAAAGCAGCTAAAGTCACCGTAGTGGAGGTAGAAGAGATTGTAGATGTGGGGACCTTTGCTCCAGAAGATATCCATGTCCCCAGCATCTATGTTGACAGGATTGTGAAGGGGGCAGTCTATGAGAAGAGGATAGAGAAGAGAACGGTCCAGAAAGGATCTATGGAGACACTCAAACCCAAGCGGAAGGCAGACCTGCTCCGAGAGAGGATCATCAGGAGGGCAGCACTGGAGTTCCAGGATGGGATGTATGCAAACCTTGGTATTGGGATCCCCATGCTGGCCAGCAACTTCATCAACTCTGACATCACTGTGCACCTACAGAGTGAGAATGGACTTCTGGGCCTGccctgtgtgtgtgtctgtttcattTTGTTTGTGTATTATAAAAAGGGTCCTTATCCCACCGAAAGTGAGGTAGACCCAGACCTTATCAATGCAGGTAAAGAGGTTGTAACTGTGGTTCCTGGAGCCGCGTTTTTCTCCAGTGATGAATCATTTGCTATGATCAGGGGTGGCCACATTGACCTGACCATGTTGGGGGCCATGCAGGTGTCTAAGTATGGGGACCTGGCCAACTGGATGATCCCGGGAAAGATGGTGAAAGGAATGGGAGGGGCTATGGACCTAGTGGCAAGTGCAGGAACCAAAGTGGTGGTGACCATGGAGCATTCTGCTAAGGGGGACAAACACAAAATCCTGGAGAGTTGTACTCTCCCACTGACCGGGAAGCAGTGTGTGGATAGGATCATCACTGAAAAGGCAGTTTTTGATGTTGACAAGGCCAGGGGCCTCACTCTCATAGAGATCTGGGAGGGGCTTACTCCTGATGACATCAGAGCTTGCACTGGCACAGACTTGGCTGTGTCCCCAAATCTAAGACCAATGCAGCAGATCTGAACCCAGTGACTCCAAACCTTTCTGCAGTGCACAGAATCCTTCTTTTAACATTCCACGTGACCATAGTGCTACAAATGCATGTACACAACAACTCTGGGAGAGATGTATAAATAGAACTGCAGACTTGAAGGTATTGACAGTTAAGAGTCAGTCGGCTACAACGTGCCTGTGACTTACAATAGAATCAGCTTGCTGAAGTCTAGGTCTACAATGCAATGACTGGTCATTCCAAGCTGTATATGGTATGATCCATGGCAGATTGTTTTACTCTTAAAATGGCATAACTACA

Function

NR:

description
succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial-like isoform X1

GO: NA

KEGG:

id description
K01027 OXCT; 3-oxoacid CoA-transferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590840.2 False 1974 mRNA 0.50 17 19217343 19224876
XM_021590839.2 True 2021 mRNA 0.49 17 19217343 19224878

Neighbor

gene id symbol gene type direction distance location
LOC110509754 LOC106563372 coding downstream 63635 19152020 ~ 19153708 (-)
LOC110509752 LOC106563351 coding downstream 146994 19068416 ~ 19070349 (-)
nefma nfm coding downstream 349590 18861950 ~ 18867753 (-)
LOC110509748 LOC100194644 coding downstream 369111 18842370 ~ 18848232 (-)
LOC118945262 LOC106563169 coding downstream 375137 18834413 ~ 18842206 (-)
LOC110509757 LOC106563370 coding upstream 50661 19275539 ~ 19277044 (-)
LOC110509759 LOC106563326 coding upstream 132915 19307783 ~ 19409443 (-)
LOC110509760 LOC106563325 coding upstream 277653 19502531 ~ 19508829 (-)
LOC110509339 NA coding upstream 289927 19514805 ~ 19518900 (-)
LOC110509765 LOC106563324 coding upstream 374984 19599862 ~ 19611225 (-)
G2161251 NA non-coding downstream 8029 19207914 ~ 19209314 (-)
G2161247 NA non-coding downstream 12886 19184443 ~ 19204457 (-)
G2161287 NA non-coding downstream 50954 19166074 ~ 19166389 (-)
G2161286 NA non-coding downstream 52618 19164160 ~ 19164725 (-)
G2161282 NA non-coding downstream 57208 19158350 ~ 19160135 (-)
G2161428 NA non-coding upstream 212979 19437857 ~ 19438254 (-)
G2161430 NA non-coding upstream 214366 19439244 ~ 19439460 (-)
G2161442 NA non-coding upstream 221312 19446190 ~ 19446736 (-)
G2161444 NA non-coding upstream 222460 19447338 ~ 19447563 (-)
G2158111 akna other downstream 2570746 16643681 ~ 16646597 (-)
G2158088 LOC100136012 other downstream 2609337 16607625 ~ 16608006 (-)
G2157743 NA other downstream 2793922 16421677 ~ 16423421 (-)
G2157715 NA other downstream 2831298 16381190 ~ 16386045 (-)
G2155120 NA other downstream 4986337 14227820 ~ 14231006 (-)
G2162005 NA other upstream 759667 19984545 ~ 19984779 (-)
G2162127 NA other upstream 858267 20083145 ~ 20083618 (-)
LOC110509788 LOC106563294 other upstream 863352 20088225 ~ 20093695 (-)
G2162405 LOC106563289 other upstream 1084311 20309189 ~ 20309802 (-)

Expression


Co-expression Network