LOC110509757 (LOC106563370)


Basic Information

Item Value
gene id LOC110509757
gene name LOC106563370
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 19275539 ~ 19277044 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590841.2
GCACAGTCTCTTCAAAATCACTAATCTTTTCGGATTTACTCTCCGGCTACACTAACTCCCACTCAGGAAGTTTTGGAATATTCTGCATCATCATGACTCTTGAGGAAGTTCTGATCCAGAAGCCCGTTGAACGTGCCCAGTGCACCGGCAAAGCGCTGGAGGAAGTTCTGCTCTCCGCTAAAGACAACAACTGCCTGACTGTCGGTGTCTATGAGTCTGCTAAAGTTATGAATGTTGACCCAGacaatgtgtgtttctgtgtcctgGCAACCGATGAGGAGTGGGAGTGTGACATTGCTCTCCAGATCCACTTCACCCTCATCCAGTCTTACTGTTTTGACAACGACATCAGCATCGTCAGGGTGAACAACATGCAGCGACTGGCCAAAATTGTCCGTGACAAGACTGGCCAGCTTGAAGATGCCCACTGCTGTCTTATCATGAACTCAGCTGATGGTTCTTGGGAGGACCCTGCTTTGGAGAAGCTGCACCTGTTCTGTGAGGAGAGCCGCGGTCTGAACGACTGGGTTCCAGAGATCACCCTCCCTAAACGCTGATCTCCTCTCTTGAGATGCTGTAAACCTTCATCCCATAAGGAAATATTCATCCTTTCACAGGATGACACTGTTTCTCATCCCTGGATACTCCTGAGGAGGATTCTGATCCAGGCATCGCGTGGCCGGCCCGAATGGGCCCCCGTGATTTCGTCGTCTCTTGTCCCGTCCATGCCAAGATGACTTCCATTCTTTATGTGAATGAGGTCAGGTATGCCACAAGAGCGACAAAACGGCCCTCATTCTTTGTGCGGATGAGGtttggagagaaaggaggagcgAGTTCTGCATCCTGCATTCCACAGAGCGAACGTCGCACGTTGAAGCACGCGCAGTAGGAGAAGAAGCGGTGCCAAGAAGAAGCATTCTTAAAAactgactttttaaaaatgtcttCTTGCTGAGCGGCAATAACAACCATTACATTCAGCGACATGTTTCCCACTTTCCAGAATTGTCTTAATTCTCTAAAGGTTTAACTTTAGAAATGTAATAATGACAAAAAATGAacataaaaaatataataaatattaCACTTATAATGCTCTAAAGGTTTCACTTTAGAATGTTTTGCCTAACTTttcaaaaatatttatttttacttatGTTATCTATTTTTATACATGTTTATGCTTGATAACATTTCGCTGTTAAACATTAAAAGGGGAAAAATGAAtaattatttaaatgtttctaaaaAACGAATACCCTAATAAATTGAATGAATGTCA
>TU2470823
CTCTCCGGCTACACTAACTCCCACTCAGGAAGTTTTGGAATATTCTGCATCATCATGACTCTTGAGGAAGTTCTGATCCAGAAGCCCGTTGAACGTGCCCAGTGCACCGGCAAAGCGCTGGAGGAAGTTCTGCTCTCCGCTAAAGACAACAACTGCCTGACTGTCGGTGTCTATGAGTCTGCTAAAGTTATGAATGTTGACCCAGacaatgtgtgtttctgtgtcctgGCAACCGATGAGGAGTGGGAGTGTGACATTGCTCTCCAGATCCACTTCACCCTCATCCAGTCTTACTGTTTTGACAACGACATCAGCATCGTCAGGGTGAACAACATGCAGCGACTGGCCAAAATTGTCCGTGACAAGACTGGCCAGCTTGAAGATGCCCACTGCTGTCTTATCATGAACTCAGCTGATGGTTCTTGGGAGGACCCTGCTTTGGAGAAGCTGCACCTGTTCTGTGAGGAGAGCCGCGGTCTGAACGACTGGGTTCCAGAGATCACCCTCCCTAAACGCTG

Function

NR:

description
growth arrest and DNA damage-inducible protein GADD45 gamma-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590841.2 False 1285 mRNA 0.43 3 19275539 19277044
TU2470823 True 518 TUCP 0.51 3 19276268 19277006

Neighbor

gene id symbol gene type direction distance location
LOC110509755 LOC106563327 coding downstream 50661 19217343 ~ 19224878 (-)
LOC110509754 LOC106563372 coding downstream 121831 19152020 ~ 19153708 (-)
LOC110509752 LOC106563351 coding downstream 205190 19068416 ~ 19070349 (-)
nefma nfm coding downstream 407786 18861950 ~ 18867753 (-)
LOC110509748 LOC100194644 coding downstream 427307 18842370 ~ 18848232 (-)
LOC110509759 LOC106563326 coding upstream 80749 19307783 ~ 19409443 (-)
LOC110509760 LOC106563325 coding upstream 225487 19502531 ~ 19508829 (-)
LOC110509339 NA coding upstream 237761 19514805 ~ 19518900 (-)
LOC110509765 LOC106563324 coding upstream 322818 19599862 ~ 19611225 (-)
pmchl LOC106563365 coding upstream 439019 19716063 ~ 19716692 (-)
G2161251 NA non-coding downstream 66225 19207914 ~ 19209314 (-)
G2161247 NA non-coding downstream 71082 19184443 ~ 19204457 (-)
G2161287 NA non-coding downstream 109150 19166074 ~ 19166389 (-)
G2161286 NA non-coding downstream 110814 19164160 ~ 19164725 (-)
G2161282 NA non-coding downstream 115404 19158350 ~ 19160135 (-)
G2161428 NA non-coding upstream 160813 19437857 ~ 19438254 (-)
G2161430 NA non-coding upstream 162200 19439244 ~ 19439460 (-)
G2161442 NA non-coding upstream 169146 19446190 ~ 19446736 (-)
G2161444 NA non-coding upstream 170294 19447338 ~ 19447563 (-)
G2158111 akna other downstream 2628942 16643681 ~ 16646597 (-)
G2158088 LOC100136012 other downstream 2667533 16607625 ~ 16608006 (-)
G2157743 NA other downstream 2852118 16421677 ~ 16423421 (-)
G2157715 NA other downstream 2889494 16381190 ~ 16386045 (-)
G2155120 NA other downstream 5044533 14227820 ~ 14231006 (-)
G2162005 NA other upstream 707501 19984545 ~ 19984779 (-)
G2162127 NA other upstream 806101 20083145 ~ 20083618 (-)
LOC110509788 LOC106563294 other upstream 811186 20088225 ~ 20093695 (-)
G2162405 LOC106563289 other upstream 1032145 20309189 ~ 20309802 (-)
G2162422 LOC106563345 other upstream 1052704 20329748 ~ 20330138 (-)

Expression


Co-expression Network