LOC110509760 (LOC106563325)


Basic Information

Item Value
gene id LOC110509760
gene name LOC106563325
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 19502531 ~ 19508829 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590846.2
ATTATCCGCCATTTTGGACGAACCGCATGCTCAAATATGCAAGTGAGTTTGTTCGAATTTTAGCCAGGGGGAATAGTCGTGATTTATTCACGGGTCAATATGTTTGTTCTTGAGGTCTTCGGCTCGTAAAGAAGGTCAATAGATTTAGAAGTGTAATCCAGATTGTATTCCAGTATATTTTTTGGGGAAAATTCCATTCTCAACATGAAGGGAATTGTTGAAGAACCCACCGACACCGAAAGTGCTGGTTTTGGGTGCTCTGTGACAAACCGCTTTGGTCATCTTTTAGACGACGATGCCGACCCGTTCGACATCATTCGCGAGGCTCAGGTGGAGAagcagaagaaaaagaagaaagatGAGCCTAAAAAAACTGCCACTACAGATAAACTTGTGAAGAAGGACTCTCAAAAGGACAGGAGAACTCCATTGAGTGCAGGGGAATGCGACAATGCACACGTTAAAAGTTTACAGGGTTCAAAATATCCTCAAGGTGCACCTGGCCATCTAGAGGAGCGACGAGTTGGCTTCCGGGATCGAAGGCAGAACGACAGTGAAGCACCCTTAGGATACTCTATTGAAAGGCCTGTGGATCAGGGCGAGCGTCCTGGAAGGGGCCGTGGAAAAGGAATGCGTGGCGGGGGCAACATAAGATCCACAGATGGCTTTGACCAAAGAGGCAAGAGGGAGTTCGAGCGCCACAGTGGCAGTGATAGAACTGGTGTGCGGTCAGAGGAGAAGCGAGGGGGCAGTGGTCCACGTAACTGGGGATCTATGAGGGACCACATAAGTGCGGCGTCTGATGGTGCTGCGGCGACTGAGGGAGGTGACGGAGATGAGGTGGCAGAGACTGGTGAAGATCTCAAACTGTTGAGTCTCTTCAGCGCCCCTGAGAATGAAGGCGAGGGGGAAGCAGTGGTGGATGTTGCTGTGGAGATGTCTCTGGATGAGTGGAAAGCCCTGCAAGAACAGAACCGGCCCAAGAAGGAGTTCAACCTGCGCAAGGCTGATACCATTGTGCCCTCTGACTCAGTGGTCATCCACAAGTCCAAGAAACAGGTTGAGCAGGAGCAGGTTGAGGTTGAGGAGGATGATGCTGCATCTCTCCGTCGCCCTGCCAATGACATCACAGCCAAGCTGAAGATTGACTTTGGCAGCCTGGGACGACCCTCACGGGGGaccagaggaagaggggggggtgGACGAGGTGGCCCAGCCACACGGCCAGAGACCGTTTCTCCTCAGAAGCCTCCTGAAAAGGCTCAGGTCCAGCAGGGACAGGCACCAAACCCTGATGACCCAGAGGACTTCCCTGCCCTGGCCTAAAGGAAGGGGCCagcattagaccagagcccagtcCATTGGTGGACTGTCACCTGTACTGTGCCTTAGTGGAATGAGCTGCACTTCCCAAGAGAAGTAACTCCTATACATCCCAAAGAACTGTATATAAATCAGAGTTCAGATGAATGGCCTTTCATTGTAATGGGAAATATGAATACTTGACCTGATTATAATAAATGCACTGTTGACATTGACA
>XM_021590847.2
ATTATCCGCCATTTTGGACGAACCGCATGCTCAAATATGCAAGTGAGTTTGTTCGAATTTTAGCCAGGGGGAATAGTCGTGATTTATTCACGGGTCAATATGTTTGTTCTTGAGGTCTTCGGCTCGTAAAGAAGGTCAATAGATTTAGAAGTGTAATCCAGATTGTATTCCAGTATATTTTTTGGGGAAAATTCCATTCTCAACATGAAGGGAATTGTTGAAGAACCCACCGACACCGAAAGTGCTGGTTTTGGGTGCTCTGTGACAAACCGCTTTGGTCATCTTTTAGACGACGATGCCGACCCGTTCGACATCATTCGCGAGGCTCAGGTGGAGAagcagaagaaaaagaagaaagatGAGCCTAAAAAAACTGCCACTACAGATAAACTTGTGAAGAAGGACTCTCAAAAGGACAGGAGAACTCCATTGAGTGCAGGGGAATGCGACAATGCACACGTTAAAAGTTTACAGGGTTCAAAATATCCTCAAGGTGCACCTGGCCATCTAGAGGAGCGACGAGTTGGCTTCCGGGATCGAAGGCAGAACGACAGTGAAGCACCCTTAGGATACTCTATTGAAAGGCCTGTGGATCAGGGCGAGCGTCCTGGAAGGGGCCGTGGAAAAGGAATGCGTGGCGGGGGCAACATAAGATCCACAGATGGCTTTGACCAAAGAGGCAAGAGGGAGTTCGAGCGCCACAGTGGCAGTGATAGAACTGGTGTGCGGTCAGAGGAGAAGCGAGGGGGCAGTGGTCCACGTAACTGGGGATCTATGAGGGACCACATAAGTGCGGCGTCTGATGGTGCTGCGGCGACTGAGGGAGGTGACGGAGATGAGGTGGCAGAGACTGGTGAAGATCTCAAACTGTTGAGTCTCTTCAGCGCCCCTGAGAATGAAGGCGAGGGGGAAGCAGTGGTGGATGTTGCTGTGGAGATGTCTCTGGATGAGTGGAAAGCCCTGCAAGAACAGAACCGGCCCAAGAAGGAGTTCAACCTGCGCAAGGCTGATACCATTGTGCCCTCTGACTCAGTGGTCATCCACAAGTCCAAGAAACAGGTTGAGGAGCAGGTTGAGGTTGAGGAGGATGATGCTGCATCTCTCCGTCGCCCTGCCAATGACATCACAGCCAAGCTGAAGATTGACTTTGGCAGCCTGGGACGACCCTCACGGGGGaccagaggaagaggggggggtgGACGAGGTGGCCCAGCCACACGGCCAGAGACCGTTTCTCCTCAGAAGCCTCCTGAAAAGGCTCAGGTCCAGCAGGGACAGGCACCAAACCCTGATGACCCAGAGGACTTCCCTGCCCTGGCCTAAAGGAAGGGGCCagcattagaccagagcccagtcCATTGGTGGACTGTCACCTGTACTGTGCCTTAGTGGAATGAGCTGCACTTCCCAAGAGAAGTAACTCCTATACATCCCAAAGAACTGTATATAAATCAGAGTTCAGATGAATGGCCTTTCATTGTAATGGGAAATATGAATACTTGACCTGATTATAATAAATGCACTGTTGACATTGACA
>XM_021590848.2
ATTATCCGCCATTTTGGACGAACCGCATGCTCAAATATGCAAGTGAGTTTGTTCGAATTTTAGCCAGGGGGAATAGTCGTGATTTATTCACGGGTCAATATGTTTGTTCTTGAGGTCTTCGGCTCGTAAAGAAGGTCAATAGATTTAGAAGTGTAATCCAGATTGTATTCCAGTATATTTTTTGGGGAAAATTCCATTCTCAACATGAAGGGAATTGTTGAAGAACCCACCGACACCGAAAGTGCTGGTTTTGGGTGCTCTGTGACAAACCGCTTTGGTCATCTTTTAGACGACGATGCCGACCCGTTCGACATCATTCGCGAGGCTCAGGTGGAGAagcagaagaaaaagaagaaagatGAGCCTAAAAAAACTGCCACTACAGATAAACTTGTGAAGAAGGACTCTCAAAAGGACAGGAGAACTCCATTGAGTGCAGGGGAATGCGACAATGCACACGTTAAAAGTTTACAGGGTTCAAAATATCCTCAAGGTGCACCTGGCCATCTAGAGGAGCGACGAGTTGGCTTCCGGGATCGAAGGCAGAACGACAGTGAAGCACCCTTAGGATACTCTATTGAAAGGCCTGTGGATCAGGGCGAGCGTCCTGGAAGGGGCCGTGGAAAAGGAATGCGTGGCGGGGGCAACATAAGATCCACAGATGGCTTTGACCAAAGAGGCAAGAGGGAGTTCGAGCGCCACAGTGGCAGTGATAGAACTGGTGTGCGGTCAGAGGAGAAGCGAGGGGGCAGTGGTCCACGTAACTGGGGATCTATGAGGGACCACATAAGTGCGGCGTCTGATGGTGCTGCGGCGACTGAGGGAGGTGACGGAGATGAGGTGGCAGAGACTGGTGAAGATCTCGCCCCTGAGAATGAAGGCGAGGGGGAAGCAGTGGTGGATGTTGCTGTGGAGATGTCTCTGGATGAGTGGAAAGCCCTGCAAGAACAGAACCGGCCCAAGAAGGAGTTCAACCTGCGCAAGGCTGATACCATTGTGCCCTCTGACTCAGTGGTCATCCACAAGTCCAAGAAACAGGTTGAGCAGGAGCAGGTTGAGGTTGAGGAGGATGATGCTGCATCTCTCCGTCGCCCTGCCAATGACATCACAGCCAAGCTGAAGATTGACTTTGGCAGCCTGGGACGACCCTCACGGGGGaccagaggaagaggggggggtgGACGAGGTGGCCCAGCCACACGGCCAGAGACCGTTTCTCCTCAGAAGCCTCCTGAAAAGGCTCAGGTCCAGCAGGGACAGGCACCAAACCCTGATGACCCAGAGGACTTCCCTGCCCTGGCCTAAAGGAAGGGGCCagcattagaccagagcccagtcCATTGGTGGACTGTCACCTGTACTGTGCCTTAGTGGAATGAGCTGCACTTCCCAAGAGAAGTAACTCCTATACATCCCAAAGAACTGTATATAAATCAGAGTTCAGATGAATGGCCTTTCATTGTAATGGGAAATATGAATACTTGACCTGATTATAATAAATGCACTGTTGACATTGACA
>XM_021590849.2
ATTATCCGCCATTTTGGACGAACCGCATGCTCAAATATGCAAGTGAGTTTGTTCGAATTTTAGCCAGGGGGAATAGTCGTGATTTATTCACGGGTCAATATGTTTGTTCTTGAGGTCTTCGGCTCGTAAAGAAGGTCAATAGATTTAGAAGTGTAATCCAGATTGTATTCCAGTATATTTTTTGGGGAAAATTCCATTCTCAACATGAAGGGAATTGTTGAAGAACCCACCGACACCGAAAGTGCTGGTTTTGGGTGCTCTGTGACAAACCGCTTTGGTCATCTTTTAGACGACGATGCCGACCCGTTCGACATCATTCGCGAGGCTCAGGTGGAGAagcagaagaaaaagaagaaagatGAGCCTAAAAAAACTGCCACTACAGATAAACTTGTGAAGAAGGACTCTCAAAAGGACAGGAGAACTCCATTGAGTGCAGGGGAATGCGACAATGCACACGTTAAAAGTTTACAGGGTTCAAAATATCCTCAAGGTGCACCTGGCCATCTAGAGGAGCGACGAGTTGGCTTCCGGGATCGAAGGCAGAACGACAGTGAAGCACCCTTAGGATACTCTATTGAAAGGCCTGTGGATCAGGGCGAGCGTCCTGGAAGGGGCCGTGGAAAAGGAATGCGTGGCGGGGGCAACATAAGATCCACAGATGGCTTTGACCAAAGAGGCAAGAGGGAGTTCGAGCGCCACAGTGGCAGTGATAGAACTGGTGTGCGGTCAGAGGAGAAGCGAGGGGGCAGTGGTCCACGTAACTGGGGATCTATGAGGGACCACATAAGTGCGGCGTCTGATGGTGCTGCGGCGACTGAGGGAGGTGACGGAGATGAGGTGGCAGAGACTGGTGAAGATCTCGCCCCTGAGAATGAAGGCGAGGGGGAAGCAGTGGTGGATGTTGCTGTGGAGATGTCTCTGGATGAGTGGAAAGCCCTGCAAGAACAGAACCGGCCCAAGAAGGAGTTCAACCTGCGCAAGGCTGATACCATTGTGCCCTCTGACTCAGTGGTCATCCACAAGTCCAAGAAACAGGTTGAGGAGCAGGTTGAGGTTGAGGAGGATGATGCTGCATCTCTCCGTCGCCCTGCCAATGACATCACAGCCAAGCTGAAGATTGACTTTGGCAGCCTGGGACGACCCTCACGGGGGaccagaggaagaggggggggtgGACGAGGTGGCCCAGCCACACGGCCAGAGACCGTTTCTCCTCAGAAGCCTCCTGAAAAGGCTCAGGTCCAGCAGGGACAGGCACCAAACCCTGATGACCCAGAGGACTTCCCTGCCCTGGCCTAAAGGAAGGGGCCagcattagaccagagcccagtcCATTGGTGGACTGTCACCTGTACTGTGCCTTAGTGGAATGAGCTGCACTTCCCAAGAGAAGTAACTCCTATACATCCCAAAGAACTGTATATAAATCAGAGTTCAGATGAATGGCCTTTCATTGTAATGGGAAATATGAATACTTGACCTGATTATAATAAATGCACTGTTGACATTGACA

Function

NR:

description
intracellular hyaluronan-binding protein 4-like isoform X4

GO: NA

KEGG:

id description
K19019 HABP4; intracellular hyaluronan-binding protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590846.2 False 1540 mRNA 0.51 8 19502531 19508829
XM_021590847.2 False 1537 mRNA 0.51 8 19502531 19508829
XM_021590848.2 False 1519 mRNA 0.51 8 19502531 19508829
XM_021590849.2 True 1516 mRNA 0.51 8 19502531 19508829

Neighbor

gene id symbol gene type direction distance location
LOC110509759 LOC106563326 coding downstream 93088 19307783 ~ 19409443 (-)
LOC110509757 LOC106563370 coding downstream 225487 19275539 ~ 19277044 (-)
LOC110509755 LOC106563327 coding downstream 277653 19217343 ~ 19224878 (-)
LOC110509754 LOC106563372 coding downstream 348823 19152020 ~ 19153708 (-)
LOC110509752 LOC106563351 coding downstream 432182 19068416 ~ 19070349 (-)
LOC110509339 NA coding upstream 5976 19514805 ~ 19518900 (-)
LOC110509765 LOC106563324 coding upstream 91033 19599862 ~ 19611225 (-)
pmchl LOC106563365 coding upstream 207234 19716063 ~ 19716692 (-)
LOC100136307 LOC106563312 coding upstream 229756 19738585 ~ 19785892 (-)
LOC110509772 LOC106563313 coding upstream 271227 19780056 ~ 19792894 (-)
G2161750 NA non-coding downstream 16071 19486164 ~ 19486460 (-)
G2161444 NA non-coding downstream 54968 19447338 ~ 19447563 (-)
G2161442 NA non-coding downstream 55795 19446190 ~ 19446736 (-)
G2161430 NA non-coding downstream 63071 19439244 ~ 19439460 (-)
G2161428 NA non-coding downstream 64277 19437857 ~ 19438254 (-)
G2161780 NA non-coding upstream 24799 19533628 ~ 19534656 (-)
G2161828 NA non-coding upstream 107813 19616642 ~ 19617284 (-)
G2161830 NA non-coding upstream 112157 19620986 ~ 19622577 (-)
G2161831 NA non-coding upstream 116528 19625357 ~ 19625860 (-)
G2161832 NA non-coding upstream 117113 19625942 ~ 19626481 (-)
G2158111 akna other downstream 2855934 16643681 ~ 16646597 (-)
G2158088 LOC100136012 other downstream 2894525 16607625 ~ 16608006 (-)
G2157743 NA other downstream 3079110 16421677 ~ 16423421 (-)
G2157715 NA other downstream 3116486 16381190 ~ 16386045 (-)
G2162005 NA other upstream 475716 19984545 ~ 19984779 (-)
G2162127 NA other upstream 574316 20083145 ~ 20083618 (-)
LOC110509788 LOC106563294 other upstream 579401 20088225 ~ 20093695 (-)
G2162405 LOC106563289 other upstream 800360 20309189 ~ 20309802 (-)
G2162422 LOC106563345 other upstream 820919 20329748 ~ 20330138 (-)

Expression


Co-expression Network