LOC110509339


Basic Information

Item Value
gene id LOC110509339
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 19514805 ~ 19518900 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110509339
ATGTTGAGTAACGAGACTTTTCAGACACAATTATCCACCATTGTCTAGGTATTAGTTGCAGTTGCGCAGATAGATGAGTAGACTCCTTCGCTGTTGTTATGAGTCTGATGTTGGTTCAGCAGAATAAGGAAATTAGTTTGCTGAAGAATAAACTTCGTGTGAACAAAACATGTTGGAAAAAAAGGGCGATGTTAATGAACGTGATAATGGTCAAAAGGGAGAAGACTTCCACAGGAACGAGTGTCAGTCGGGAAAAAGGGATTGAGGTGGAAGGCGCACCAAAAGgggACCGTATTCATTTCTACAACTACtgctctgaccctctctctgagGAGGCTCATCAAGAGGAAGAGGATTTTTACTCCCAGACCTCCCCTTGGGCTGACTCAGACAAAGATAATCAGAGAAACACTGAGACGTTGACAAGACCACACTGAATATGGGTAGACATGGTCAAGTCCAATAGCCCAACCTCTGTTGCAGATGTGGTATTGCTCTCTGAATTTGATCATCAAGAGGAAGTTCACCTTAATCCCCAGATCTCACCTGCATCAGACCCAGAGAAACAAGATGGCCATCCCTCAAACACAGAACCAAACCCAGGCAGGATTGGAGATAATGTGCAGAATGGTGATTCTTTAAATATAGCCCAAAGTTCGGATAGAAGCGCTGCCACCGGAGCAGCGAAGAAGCCCTTCATTTGCAACTtttgtggaaagtgtttcaattGGAGATATATGCTTAAGCCCACCTTAATTCTCACATCAAACCCTTTAGTTGCCCGCAGTGTGGGAAAGGTTTTAGTACAAAGACAGGGTGTAGTAATCACCTCTTGGTGGTGCTTTCTAAAGAGAAGACCTTCAAATGCGCAGATTGTGGGAAGATGTTTGCGTTGAGAAGTAGTTAGGTCAAACACAGGGAGCTTAACCCAACTCGGAACACCTGCACAACATGTGAAAAAATATTCTGTGGGGAACATGCTCTGAAAAGGCACAACTTCAGTGATCACGAGGAAAGGGCACACAGCTGCTGTCTAAGACCTTTCAGTCATGGTATCAATGGGATCTTCATAAAGCAGAGCACTCAAAGGAGAAGTATTGCTGTGAATCCTGTGAAAAAGAGACTACCAGTATGTCTGTGATCTATCTGATGCAACCAGGCTCAAATGGCACGATCGTACATACATACTGGTGA

Function

NR:

description
oocyte zinc finger protein XLCOF6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110509339 True 1194 mRNA 0.44 6 19514805 19518900

Neighbor

gene id symbol gene type direction distance location
LOC110509760 LOC106563325 coding downstream 5976 19502531 ~ 19508829 (-)
LOC110509759 LOC106563326 coding downstream 105362 19307783 ~ 19409443 (-)
LOC110509757 LOC106563370 coding downstream 237761 19275539 ~ 19277044 (-)
LOC110509755 LOC106563327 coding downstream 289927 19217343 ~ 19224878 (-)
LOC110509754 LOC106563372 coding downstream 361097 19152020 ~ 19153708 (-)
LOC110509765 LOC106563324 coding upstream 80962 19599862 ~ 19611225 (-)
pmchl LOC106563365 coding upstream 197163 19716063 ~ 19716692 (-)
LOC100136307 LOC106563312 coding upstream 219685 19738585 ~ 19785892 (-)
LOC110509772 LOC106563313 coding upstream 261156 19780056 ~ 19792894 (-)
LOC110509773 LOC106563311 coding upstream 288360 19807260 ~ 19835269 (-)
G2161750 NA non-coding downstream 28345 19486164 ~ 19486460 (-)
G2161444 NA non-coding downstream 67242 19447338 ~ 19447563 (-)
G2161442 NA non-coding downstream 68069 19446190 ~ 19446736 (-)
G2161430 NA non-coding downstream 75345 19439244 ~ 19439460 (-)
G2161428 NA non-coding downstream 76551 19437857 ~ 19438254 (-)
G2161780 NA non-coding upstream 14728 19533628 ~ 19534656 (-)
G2161828 NA non-coding upstream 97742 19616642 ~ 19617284 (-)
G2161830 NA non-coding upstream 102086 19620986 ~ 19622577 (-)
G2161831 NA non-coding upstream 106457 19625357 ~ 19625860 (-)
G2161832 NA non-coding upstream 107042 19625942 ~ 19626481 (-)
G2158111 akna other downstream 2868208 16643681 ~ 16646597 (-)
G2158088 LOC100136012 other downstream 2906799 16607625 ~ 16608006 (-)
G2157743 NA other downstream 3091384 16421677 ~ 16423421 (-)
G2157715 NA other downstream 3128760 16381190 ~ 16386045 (-)
G2162005 NA other upstream 465645 19984545 ~ 19984779 (-)
G2162127 NA other upstream 564245 20083145 ~ 20083618 (-)
LOC110509788 LOC106563294 other upstream 569330 20088225 ~ 20093695 (-)
G2162405 LOC106563289 other upstream 790289 20309189 ~ 20309802 (-)
G2162422 LOC106563345 other upstream 810848 20329748 ~ 20330138 (-)

Expression


Co-expression Network