LOC110509761 (LOC106563368)


Basic Information

Item Value
gene id LOC110509761
gene name LOC106563368
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 19532192 ~ 19534613 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590850.2
CcagcccctccctctcctcatctctctatccaACATCAGTCTGAGCTCCACACCTCCTCAGGACAGACCTGCAGTACACCCAGAATTCTGTGAGGTCTCATCAGACCTGAATTTTCCTGATTGCCATCTGATCAAGATCCAACAGGTTCTGGGTATAAAGGCTCATCACATCAGCTTACTGGATCCACAACCACATTTATCTACAATAAGATACTTTCTCGTTCAAGACTGAGTTGAAGGGGATCTCTCCATAACAGGCCATGAGGGTGAGCCGGGTGTTACAGCTGTCCATCTGCCTGGTGGGCCTCAGCCTGGCATGGCGCTCCCCACCACCAGGCAAACCCTCCATAGAGAGAGGTGGCCAGGTTCCTGTAGGCCAGATACAGGTGCTCTCTGTGGGGCTGCTCCAACTGCTCCAGGGGGTGCAGGAGAGTGCCTGGAGGATGGAGAGGCAGGGCGACCAAGTGtcagaggagctgatgggagacACCCAGGCTGTGGAGAGGCTACGAGAGCAAGGTGTGCAGGTAGGAAGGACCCACAGGCAGGTGACGAAGAACCTCCAGATGATGACAGCACAGAGCGACAGGCTGGAGAATGCAGCCCAGGATGTGCAGCTGGGACTGGAGACTTTATTGGCCGAGCAAGGTGCCTTGGAGCTCAGGATGTGCCGTGTCCTGGAGAGGGTGCAGAGCATAACCAAGCCAGTTCTAAGGATGGAAAAGCAGCTTAATATGAACCTGATGAAGGTGATAGTGGACACTCAGTCCAGACGTCTGGCTGACCTAGCCTTGGAAGTTATGACCCGGGACAGATTGATTGATAAGCATCTGCAGCACATTGTTGACCTGGAGGAACAGgCGTCTCGTATCAGAGGGGAGAGGCCTCCCACCAGCGCTGAGGGCAGATTCTGATGATGGCTCTGGCCCTTGTCTGggcaacaaccacagctgcatcAATATAAACACTCCATTCAAAACTATAAGAAAACAACATAGTTATAGTGGAAATCTGAGAAAGAAAGACACATAGCATTATTCATACAATATTCAAGCTTCATTTCTTCATCCAGATACTATGAGATGATCTGATTGGGATTTTAAAAGGTAGACATCCTTGTTGGGTAATCTCCAAAGTGGTGTGGCTCTGTGTTAATGTTTGAGGTACATATTTGGAAGCTTTGTATTGCAATCCCTTGTCagctggtgcctctagggcaattcaggTAGATGTTAGAGGGCCCTTTTACTGAAGCATGTGTTTGTTTCATACAATTGTGTTTTGCTTTTgttgttttcttttcttttcatgcattgtgtaattgatgtgtatagatATCCATACTAGTGTAAgggttgtttattgatgtgttcatGCAGGGCTCATCTacaaaagagaccttggtctcagcatgactcaaTGCTTAaaactgcaatatgtaactttttgggtaaCTCCACCAAATTGACATAGACatttgtgttatagatctgtcattcgcattgaaagcaagtctaagaagcggtagatctgttctatgtgcactatttctatgctacCCAtgcttaagttttgtttttgcatcttttactttagCTTTTGTACACacacttcaaacagctgaaaatacaatattttgggttatggacaatatattttacagtggtttagatggtacaatgattcgcTACACTATATTGCTTGTTTtgccacataaactgaaattaggcaaactattagaattttagcaaccagtatatttctgcatagtgcatcttaaATAAAGGCAAACCCTTTTTAAATAAATGCAACCACAATCAAATAAACAGATTCAAGGTAATGGAATGGA

Function

NR:

description
uncharacterized protein LOC110509761

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590850.2 True 1849 mRNA 0.45 3 19532192 19534613

Neighbor

gene id symbol gene type direction distance location
LOC110509758 LOC106563369 coding upstream 250706 19279996 ~ 19281486 (+)
LOC110509338 LOC106563371 coding upstream 258830 19271624 ~ 19273362 (+)
ghr ghr2 coding upstream 282290 19227039 ~ 19249902 (+)
trnac-gca-162 NA coding upstream 312758 19219364 ~ 19219434 (+)
c6 c6 coding upstream 327621 19170068 ~ 19204571 (+)
LOC110509762 LOC106566653 coding downstream 1050 19535663 ~ 19560763 (+)
tjp2a LOC106563322 coding downstream 28908 19563521 ~ 19599545 (+)
LOC110509766 LOC106566689 coding downstream 74989 19609602 ~ 19616511 (+)
LOC110509769 smc5 coding downstream 85033 19619646 ~ 19626660 (+)
LOC118936421 smc5 coding downstream 93895 19628508 ~ 19631851 (+)
G2161492 NA non-coding upstream 46864 19485098 ~ 19485328 (+)
G2161468 NA non-coding upstream 67560 19464274 ~ 19464632 (+)
G2161458 NA non-coding upstream 73830 19458157 ~ 19458362 (+)
G2161445 NA non-coding upstream 84007 19447984 ~ 19448185 (+)
G2161436 NA non-coding upstream 89378 19442579 ~ 19442814 (+)
G2161568 NA non-coding downstream 82109 19616722 ~ 19618416 (+)
G2161585 NA non-coding downstream 126915 19661528 ~ 19661731 (+)
G2161600 NA non-coding downstream 152888 19687501 ~ 19687838 (+)
G2161601 NA non-coding downstream 154260 19688873 ~ 19689146 (+)
LOC110509753 LOC106563373 other upstream 394624 19136428 ~ 19138160 (+)
LOC118945267 NA other upstream 463408 19066137 ~ 19068784 (+)
LOC110509751 LOC106563328 other upstream 466420 18962089 ~ 19065920 (+)
G2158499 LOC106563144 other upstream 2341064 17189344 ~ 17191128 (+)
G2157602 NA other upstream 3178527 16350717 ~ 16353665 (+)
G2161635 LOC106563312 other downstream 207201 19741814 ~ 19752743 (+)
G2161678 NA other downstream 260647 19795260 ~ 19797774 (+)
LOC110509811 LOC106563272 other downstream 1663305 21160126 ~ 21389662 (+)
G2163804 LOC106613263 other downstream 2065805 21600418 ~ 21601052 (+)

Expression


Co-expression Network