LOC110509762 (LOC106566653)


Basic Information

Item Value
gene id LOC110509762
gene name LOC106566653
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 19535663 ~ 19560763 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036968265.1
agcgtgcaattggcatgctgactgcaggaatgtccaccagagctgttgccagataaaaATACAATGCAGTGGCTCCGGCGAAACTACGCTAAACCGCTGCATTTACTCAAATGTGACACCTTATAATAAATAGGTTTATGGGTTTGCAGACTAAATTCAATAGGAGTACTGGAATGCATTCAACCATAGATACGCTTTTTCAATGTATCTTATCATTTAAGTAGCCAGCCCATAGTCGCACACAACAGCTTTGTGCGAATATGCGGACACTATACCTCAGGGTTTTACACAAAGGTGCGTGACATGACAGTAAGCGGAGGATGGCTCGAAGTATCGAGGATGCTAGCGCGTCACTGACATCATTACCAAAAGCCTTCAGAGGAGTCAGAAACGATGAAACCTGGTTGGAAAAGTTACTCTTCTTTGTTTTTTTCATTTTACAACGACGGTAATATTTAAGATGGAAACAACAACCACTgtgaatggaggtggaggaaCCAGTGGGTCAAAAGATTACAAAAAGCCAACTGCTGCTGCACTGAAAGGAGCCATCCAGCTGGGCATTGGGTATGCTGTGGGGAACCTGATATCCAAGCCTGACAGAGATGTGCTCATGCAGGATTTCTACATGGTGGAGAGTGTCTTTCTACCCAGTGAGGGGAGCAACATGACCCCAGCGCACCACTTCCCAGACTTCCGCCTCAAAACCTACGCCCCTCTCGCCTTCCGCTACTTTagggagctctttggcatcaaagCAGATGACTACCTGTACTCCATCTGTAATGAGCCTCTAATCGAGCTGTCCAACCCCGGGGCCAGCAGTTCCTGGTTCTACCTGACCAGCGACGATGAGTTCATCATTAAGACAGTGCAACATAAAGAGGCTGAGTTCCTGCAGAAACTCCTTCCTGGTTACTACATGAATCTGAATCAGAACCTGAGGACACTGCTACCTAAGTTCTATGGCCTGTACTGCATCCAGTGTGCCGGGGTCAACATCCGCCTGGTGGTGATGAACAACGTGTTGCCCAGGGCCCTCCAGATGCACTACAAATACGACCTGAAGGGCTCCACTTACAAACGCCACGCCTCGTGCAAGGAACGCGCCAAGTTCTCACCGACCTTCAAAGACCTGGACTTCCAGGAGATGCTTGAGGGCCTGCACTTTGATGgcgacatgtacagtgccttaaTGAAGACACTGCAGAGGGACTGCAGGGTCCTGGAGAGCTTTAAGATCATGGACTACAGCCTCCTGCTGGGGGTGCATGTGCAGGACAAGAAGTGTCTGGACAGGGGGGCCAGGGCGGACAGTAAGCGCCTCAATGGCCAGAGGGTCCTCTACTCCACCGCCCTGGAGTCCATCCAAGGGGACGGCAAGGTTGCAGAGCCAGTGGCCGACGATGACACAATGGGTGGAATTCCAGCTAAACACAAAGATGAGAAGCTGCTGATCTTCTTAGGGATCATTGACATCCTCCAGTCCTACCGGTTCATCAAGAAGGTGGAGCACTCCTGGAAAGCCCTCGTACATGATGGGGATACAGTGTCAGTTCACAGGCCCGGTTTCTATGCAGACAGATTTTTGAAGTTCATGGGCGGCACTGTATTCAAAAATATCCGTCctctaaGAGGAGCATCCTCCAAGAGGAAGAGGAGCTCCATCCATGCGATGAGGTCAGCCTCCCAGGAGGTACTGTCCCCccaaaaggaggagaagaaggacgAGAGAAAGGCCCAAAGCATGGAGAGCCTGGGCGGACAATTAATGAGTTCCTCCAAGCACTCTGACCTAGTCCTACTTCCGAAATGTTTAAATCAGGCTGTTTCCTCATCCTTCTCCACTCTTGAGAAGATCAAGAAAGACCTTGAGGAGCACTTTGAGGAGCACCTGGAGAATAGTGATAACCATTGTGACTCCAGTGCAAATGTGGCCCTGGATGACACGGTCCCCTCTCCCCATACCCAGGGCAGTCCAGACTCTACGCAATGTCTACTTGGTGGGTGTACAAGATACACTATGCATTTAGTTAGGAGTCTATATCTGTTTAATAGTGTCTATGACGTCATCACTTCTGCTTGTCTCTATGATATCATAAATATTCCATGCCCTTTGTAAGGTCACTGATTATGTCGCTCTGTGACATCATTGCTAACTTAGCTCCTATGTAGGACATCACTAA

Function

NR:

description
phosphatidylinositol 4-phosphate 5-kinase type-1 beta-like

GO: NA

KEGG:

id description
K00889 PIP5K; 1-phosphatidylinositol-4-phosphate 5-kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036968265.1 True 2186 mRNA 0.49 13 19535663 19560763

Neighbor

gene id symbol gene type direction distance location
LOC110509761 LOC106563368 coding upstream 1050 19532192 ~ 19534613 (+)
LOC110509758 LOC106563369 coding upstream 254177 19279996 ~ 19281486 (+)
LOC110509338 LOC106563371 coding upstream 262301 19271624 ~ 19273362 (+)
ghr ghr2 coding upstream 285761 19227039 ~ 19249902 (+)
trnac-gca-162 NA coding upstream 316229 19219364 ~ 19219434 (+)
tjp2a LOC106563322 coding downstream 2758 19563521 ~ 19599545 (+)
LOC110509766 LOC106566689 coding downstream 48839 19609602 ~ 19616511 (+)
LOC110509769 smc5 coding downstream 58883 19619646 ~ 19626660 (+)
LOC118936421 smc5 coding downstream 67745 19628508 ~ 19631851 (+)
LOC110509767 LOC105015049 coding downstream 70162 19630925 ~ 19644968 (+)
G2161492 NA non-coding upstream 50335 19485098 ~ 19485328 (+)
G2161468 NA non-coding upstream 71031 19464274 ~ 19464632 (+)
G2161458 NA non-coding upstream 77301 19458157 ~ 19458362 (+)
G2161445 NA non-coding upstream 87478 19447984 ~ 19448185 (+)
G2161436 NA non-coding upstream 92849 19442579 ~ 19442814 (+)
G2161568 NA non-coding downstream 55959 19616722 ~ 19618416 (+)
G2161585 NA non-coding downstream 100765 19661528 ~ 19661731 (+)
G2161600 NA non-coding downstream 126738 19687501 ~ 19687838 (+)
G2161601 NA non-coding downstream 128110 19688873 ~ 19689146 (+)
LOC110509753 LOC106563373 other upstream 398095 19136428 ~ 19138160 (+)
LOC118945267 NA other upstream 466879 19066137 ~ 19068784 (+)
LOC110509751 LOC106563328 other upstream 469891 18962089 ~ 19065920 (+)
G2158499 LOC106563144 other upstream 2344535 17189344 ~ 17191128 (+)
G2157602 NA other upstream 3181998 16350717 ~ 16353665 (+)
G2161635 LOC106563312 other downstream 181051 19741814 ~ 19752743 (+)
G2161678 NA other downstream 234497 19795260 ~ 19797774 (+)
LOC110509811 LOC106563272 other downstream 1637155 21160126 ~ 21389662 (+)
G2163804 LOC106613263 other downstream 2039655 21600418 ~ 21601052 (+)

Expression


Co-expression Network