LOC110509766 (LOC106566689)


Basic Information

Item Value
gene id LOC110509766
gene name LOC106566689
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 19609602 ~ 19616511 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005040434.1
CTCGTAGGCAAGTTCTCTGCATTTGAGGATACTAAGCCCATGAAACTGGTCCGCGAGATTGTTAATATGTTTAgcaagctcagactccatgtcatcagatgAGACCTCATGAGCATCTGCTACTCTTTCACACAGAGACAACCTTTGATCCCTCCATCGCCAACTGTGACTTTGAGGGTGGTTTCTGCTGACACACCCAGGATCAAATGGAAGGATCCCCATGGAAGAGGGTGTCAGTCAAGCCCAACATCTACAGGATTGGGGACCACACAACAGGGGCAGGATCCTTCCTTCTGGCCCGCTCCCGGCTGAATCCACGCGCTGGCTATATTAGCCACCTGCTCGGGCCTCTTCTGCCCGGCAACATGAAGTACTGTCTGAGGTTCCACTACTCTCTCTGTGAATTCATCCAGACAGACCAGGCTCTCACCGTTTACATTCAGGATCAGAGCGGAATCACACAGGAGAGGATATGGACCCAGAACGACAAGGTGTCTGGATAGCGACAGAGGTCACCATCCAGAGTCCACATGTTGCCAATGTAAAATGGCTTAACAATGGCTTTCCTTTTTAGTTAGTCAGTTATTTTCATTCCTCAGTCAGAACAACTGTCCTGTGCATGCCTTGCCTATAGTGTTTCATAATGTTTGTGACGGAACCCCTTGTGTTTATTCGGCCTTACATTGTATCTTTGACATCGTTTTTTTTAATTGTCAGTCCTTTGGTTTGGCTCCAGCTTCATAAGGAGCAGCAGTTTAAAATGAAACACGAATGCCGAAGTCTGTAGTCAGCGATTCTCCTCGTTGGTTTTTCTTTTTAAACAGTGGAATACCAAAGTGACCAACAGCATCAGGCAAGTGGTGAAAAACATCACTACCCAtaatccctctcctcctctgtacaATAACACCTGAGACGTAATAGGAAACGAAACACCCCACTCGCTGTTTTATtcgtcgtctgcgtagaggtggatcagagaatcaccagcagcaagagggacatcattgatgtatacagagaaaagagtcggcccgagaattaaaccctgtggcacccccatagag
>XR_002471481.2
gactagcctacatgATCTATTAGGAAAATATTCCCGAGAACGCACTCACACCTCTATTGCTATCTTCTCTACAGTCTAAACGAGATCATTGGGACGTCCCAACTCTGATGTCAACCTGTTGAAGTGTAAAACGGTTAATGCTGGGAGACAACCTTTGATCCCTCCATCGCCAACTGTGACTTTGAGGGTGGTTTCTGCTGACACACCCAGGATCAAATGGAAGGATCCCCATGGAAGAGGGTGTCAGTCAAGCCCAACATCTACAGGATTGGGGACCACACAACAGGGGCAGGATCCTTCCTTCTGGCCCGCTCCCGGCTGAATCCACGCGCTGGCTATATTAGCCACCTGCTCGGGCCTCTTCTGCCCGGCAACATGAAGTACTGTCTGAGGTTCCACTACTCTCTCTGTGAATTCATCCAGACAGACCAGGCTCTCACCGTTTACATTCAGGATCAGAGCGGAATCACACAGGAGAGGATATGGACCCAGAACGACAAGGTGTCTGGATAGCGACAGAGGTCACCATCCAGAGTCCACATGTTGCCAATGTAAAATGGCTTAACAATGGCTTTCCTTTTTAGTTAGTCAGTTATTTTCATTCCTCAGTCAGAACAACTGTCCTGTGCATGCCTTGCCTATAGTGTTTCATAATGTTTGTGACGGAACCCCTTGTGTTTATTCGGCCTTACATTGTATCTTTGACATCGTTTTTTTTAATTGTCAGTCCTTTGGTTTGGCTCCAGCTTCATAAGGAGCAGCAGTTTAAAATGAAACACGAATGCCGAAGTCTGTAGTCAGCGATTCTCCTCGTTGGTTTTTCTTTTTAAACAGTGGAATACCAAAGTGACCAACAGCATCAGGCAAGTGGTGAAAAACATCACTACCCAtaatccctctcctcctctgtacaATAACACCTGAGACGTAATAGGAAACGAAACACCCCACTCGCTGTTTTATtcgtcgtctgcgtagaggtggatcagagaatcaccagcagcaagagggacatcattgatgtatacagagaaaagagtcggcccgagaattaaaccctgtggcacccccatagag
>TU2471142
TGCCCGATCTCCTGGATCATAAATAGGCGCTTACCTGTACATGACTAGGAACTGGTAGATCGCGTAACATTCCGCTTCACCATCTTTATCCTACTGGTCCCTCTGCTCGATACCTTCAAACAATTTGCATGGATTAGGCCCGATCGGTCAACTCCTGCTGCATCGTGACATTTGAGCGGATTACCGATGCACAAAGCGACTTTAGACTGCTGTGTTTCAACATGATGGCGCTGCAACGATCGTGTTCTACGTAGCCTACACTGCTCTTGTCTGCACCACTTTTTCCCACGCGCAGTGAGATAGAGCCCGCAAATTCTTCCCTTGCGCACAATGCATCCCCTAGGGCTAAGAAACACCGGTGTAAGCAAAATATCGACACCACGGTGTCAAGCACACAAAGCAAACTATTCAAGGACCCTCGCTCACAGCATTTTATCAGAATAGCCTATGGATGTAGACTAGCCTATGgatgtagactagcctacatgATCTATTAGGAAAATATTCCCGAGAACGCACTCACACCTCTATTGCTATCTTCTCTACAGTCTAAACGAGATCATTGGGACGTCCCAACTCTGATGTCAACCTGTTGAAGTGTAAAACGGTTAATGCTGGGAGACAACCTTTGATCCCTCCATCGCCAACTGTGACTTTGAGGGTGGTTTCTGCTGACACACCCAGGATCAAATGGAAGGATCCCCATGGAAGAGGGTGTCAGTCAAGCCCAACATCTACAGGATTGGGGACCACACAACAGGGGCAGGATCCTTCCTTCTGGCCCGCTCCCGGCTGAATCCACGCGCTGGCTATATTAGCCACCTGCTCGGGCCTCTTCTGCCCGGCAACATGAAGTACTGTCTGAGGTTCCACTACTCTCTCTGTGAATTCATCCAGACAGACCAGGCTCTCACCGTTTACATTCAGGATCAGAGCGGAATCACACAGGAGAGGATATGGACCCAGAACGACAAGGTGTCTGGATAGCGACAGAGGTCACCATCCAGAGTCCACATGTTGCCAATGTAAAATGGCTTAACAATGGCTTTCCTTTTTAGTTAGTCAGTTATTTTCATTCCTCAGTCAGAACAACTGTCCTGTGCATGCCTTGCCTATAGTGTTTCATAATGTTTGTGACGGAACCCCTTGTGTTTATTCGGCCTTACATTGTATCTTTGACATCGTTTTTTTTAATTGTCAGTCCTTTGGTTTGGCTCCAGCTTCATAAGGAGCAGCAGTTTAAAATGAAACACGAATGCCGAAGTCTGTAGTCAGCGATTCTCCTCGTTGGTTTTTCTTTTTAAACAGTGGAATACCAAAGTGACCAACAGCATCAGGCAAGTGGTGAAAAACATCACTACCCAtaatccctctcctcctctgtacaATAACACCTGAGACGTAATAGGAAACGAAACACCCCACTCGCTGTTTTATtcgtcgtctgcgtagaggtggatcagagaatcaccagcagcaagagggacatcattgatgtatacagagaaaagagtcggcccgagaattaaaccctgtggcacccccatagagactgccaaaggtccagacaacaggccctccaatttgacacactgaactctgtctgagaagtagttggtgaaccaggcgaggcagtcatttgataaaccaaggctgttgagtctgccgataagaatgtgatgattgacagagtcgaaagccttggccaggtcgatgaatacagctacacagtattgtctcttatcgatggtggttatgatatcatttaggaccttgagcgttgcTGAGgagcacccatgaccagctcggaaaccagattgcatagcggagaaggtacggtgggattcaaactggtcagtgatctgtttgttaacttggctttcgaagaccttagaaaggcaggatagatataggtctgtagcagtttgggtctagagtgtctccccctttgaagagggggattaccgcggcagctttccaatctttggggatctcagacgatacgaaagagagattgaacaggctagtaataggggttgcaacaattttggcggataattttagaaagagagggtcaagattgtctagccctgctgatttgtaggggtccagattttgcagctctttcaaaacatcagctatctggatttgggtgaaagataaatgg

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005040434.1 False 1067 mRNA 0.47 3 19609602 19615895
XR_002471481.2 False 1077 mRNA 0.47 3 19611363 19615895
TU2471142 True 2167 TUCP 0.47 3 19610889 19616511

Neighbor

gene id symbol gene type direction distance location
tjp2a LOC106563322 coding upstream 10057 19563521 ~ 19599545 (+)
LOC110509762 LOC106566653 coding upstream 48839 19535663 ~ 19560763 (+)
LOC110509761 LOC106563368 coding upstream 74989 19532192 ~ 19534613 (+)
LOC110509758 LOC106563369 coding upstream 328116 19279996 ~ 19281486 (+)
LOC110509338 LOC106563371 coding upstream 336240 19271624 ~ 19273362 (+)
LOC110509769 smc5 coding downstream 3751 19619646 ~ 19626660 (+)
LOC118936421 smc5 coding downstream 12613 19628508 ~ 19631851 (+)
LOC110509767 LOC105015049 coding downstream 15030 19630925 ~ 19644968 (+)
LOC110509340 LOC106563366 coding downstream 35857 19651752 ~ 19660001 (+)
slc30a5 slc30a5 coding downstream 50288 19666183 ~ 19672307 (+)
G2161492 NA non-coding upstream 124274 19485098 ~ 19485328 (+)
G2161468 NA non-coding upstream 144970 19464274 ~ 19464632 (+)
G2161458 NA non-coding upstream 151240 19458157 ~ 19458362 (+)
G2161445 NA non-coding upstream 161417 19447984 ~ 19448185 (+)
G2161436 NA non-coding upstream 166788 19442579 ~ 19442814 (+)
G2161568 NA non-coding downstream 827 19616722 ~ 19618416 (+)
G2161585 NA non-coding downstream 45633 19661528 ~ 19661731 (+)
G2161600 NA non-coding downstream 71606 19687501 ~ 19687838 (+)
G2161601 NA non-coding downstream 72978 19688873 ~ 19689146 (+)
LOC110509753 LOC106563373 other upstream 472034 19136428 ~ 19138160 (+)
LOC118945267 NA other upstream 540818 19066137 ~ 19068784 (+)
LOC110509751 LOC106563328 other upstream 543830 18962089 ~ 19065920 (+)
G2158499 LOC106563144 other upstream 2418474 17189344 ~ 17191128 (+)
G2157602 NA other upstream 3255937 16350717 ~ 16353665 (+)
G2161635 LOC106563312 other downstream 125919 19741814 ~ 19752743 (+)
G2161678 NA other downstream 179365 19795260 ~ 19797774 (+)
LOC110509811 LOC106563272 other downstream 1582023 21160126 ~ 21389662 (+)
G2163804 LOC106613263 other downstream 1984523 21600418 ~ 21601052 (+)
G2165628 LOC106563266 other downstream 3221176 22837071 ~ 22841481 (+)

Expression


Co-expression Network