LOC110509767 (LOC105015049)


Basic Information

Item Value
gene id LOC110509767
gene name LOC105015049
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 19630925 ~ 19644968 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590859.2
CTCAAAGCATGCAGTGTGCTCGTGCGTCAGGCATACCACACACCCCCGCAGGGGGGTAAAACCGCAAAAATGTTCTCAGCCTCATGGAAAATGTGTAAAATatcatgagattagctataaaactgcactTTTTCCTCTTTGCCCCATGGCAATGTGTGGAATTGTAGGAAGTATTATTTTTTTGCAGTATGCCCCACTGGTGTCTGAGATCATAGATTCTACCTCACtatttaacccccccccctcgATGGTGGATGAGTACAACAGAAGAGAGCAGGAGATCAAGAACCTGGAGAAAGAGCTGGATGACGAGCAATGCCCTTGACACCTACAGACAGACCATATCAGAGGCAACAAACGCAAAACCGGTGgacaacagtagcgaggctaaccAGCTGGAGGGATTCAACTCCGACGGAGTCCTTAGTATTGCAGAAAGGGGGAACGGAGAGTCTGCCAGGGCTTTTCTAACACCGAACGACCCACGGAGCAAGAACCCGCTTATTCAATTAAGCTACTATAAAACTACACCGATAATAAGGGCAATTTACCCAGCAGAGATGGCACAGGAGACCAATCAGAGTCAAGCGCCCATGCTTTGTGCTACCGGCTGTGGTTTCTTTGGAAACCCCAGGACCAGTGGCATGTGCTCTGTCTGCTATAAGGACCACCTGACCAGACAGAACAATGGAGGAGTGAGCCCCCTGAGTGCAATGGGTGGCAGTGTCTCCGGTAGCCCCACAATGGAGGCCTCTGCCATCCAGAGAATTGAGGCCACATTGAATAATGCTGCGGCGGCTGCTGCTGAAGCTGATGCGGAAGCTGCCAGtggggcagcagctgctcttcctgttACCCAACAGATGACCGAGATGAGCATTTCCTGTGAGGAGGAAGGAGCATCGCCTAAAGCAGAGCTTGCAGAACCTGTGGTCACTCAGCCCATCGCCTCCGCTTCCCCTCCCAGTGCTGCCGGGAGTGACGAATCCAAATTACCTGAACCCGCCAAACCGAAGAAGAACAGGTGCTTCATGTGCCGCAAGAAGGTTGGCCTTACAGGTTTTGACTGCCGCTGTGGGAACCTGTTCTGTGGACTCCACCGTTACTCAGACAAGCACAACTGCCCATACGACTACAAAGCAGAGGCCGCCGCCAAGATCCGCAAGGAGAACCCTGTGGTGGTGGCCGATAAGATCCAGAGAATATAAGACCTTTTCTCACTTTGACCTTTTCTCACTGAGTGATTGGGTTAAAAAAAGGACTCGTGCTGACCTGCGTTCTAAAGGACTAGTTTTTTAAATTACAGTTTGGGGGGTCCAGTTTCCTGCAATGCATGAACgatcacatttttttattttgttttctgttggtgtCTGTGCTTATGATTTAAAGAAAAATGAGAAAgatcaaatgtttttttagaaTACTACAGACTAGAAATGTTGCTTTTCCGGTGATGCCTGGACCTGGCTTAATTCTCACTGTTTATGGGGGAGTCTGATTGTTGTGAAGTAGGCGAGCTGATGTGTTAACTACTTTTGTGACTGGCTATCTGTGTGTTTAGATTTTTCTGAGGATAGTGGGGGACACTAGCCTATGAGACTGTTACAGCCCCGACCGGATCACTCCCGCAGTGGCAGGTCACAGCTGGCTTATGTTGGGAATAGCTGTTTTTGCTCAACTTCTCATAACGTGTCATGGTGTCCTCCATGGAATCTGTTTTATATGTACTACCAGACATGTTTGTTTCTGTGCTGCATGGGGCCTCAGTTCAGGGGAGGTCCTCAAGCACATTTCCCTATTGTGAGATAAGATGTGAAGTAGTGACATAAAAAAAAGCTTGATTTATTAGTCAACTAAAGAACATATTGGAGGAGCTTATGAAGTTATCATCCAGTAGGCATGGTGAAAGCAACCAGACCCCTGACACTTGGACGATGGCTGGATGGATGTGTTCTATTCCAACCTTATTGGCTCTCATCAGAGATGCATCTGAATCTAACCGAATATCATTGTCATACAAGCCTGCTCCACTGGTTCATTCTTCTGGCAATGTGTGCTGCactaaaaaaaacattgcttagGTTTACTTGTATCTGTTAAAGATTATTTCCTAAAGAAGTATTTAGGTTCGATGCTGTGATGCTCATTTGCAGGGGATACTTGGCGCTGCCTCTGACCGGGTGGATGGGAAATTGGAGGAAGACTTCCTGCAATGAGATCAAGGTCAGGTCATTTGACCTCACTCATCCAGCCACTCGGGTCATGTGACAGTGTTGATGCCCATTCTGTGTTCTTTTTTTCTCCCTCCTCGTGTCCATGTTTTTATGAGGATATGGAGTGTTTTGCATGGGTTGTTGTATCAATGACAAAAAGCCTAAATGAACCAGATTGCTGAGGTTGGAAGGGTTAGGTCCACTAATCTTTTGATGAATGTTTCACTTCTGTTTTATTATTCTTTTTAATGTATGTGTgctgatatgtttgatatattgtGGAGTGCGTGTCACATGCTATGTATTAAACACAAGTGTAGTGCAGTAGACTTGGATGGATGGTGGATGAGTATTGTGTATGTATGCAAGTAAGTGCTTGTGTTCCTCAGTAGTCAGAACTGGTCCAGTGGACTCACTCTGGATTTAGATTCTTTTAGTTTTTCTGTTTTATTTGGTCCTGCTGTTCACGCTGTAGGGCTGTGAGATTTCACTTTAATATCTGTTTTCATATTTTTAACCCTTTTTTAGTTATGCAAGTTTGTACAAACCATTATTTATGTACTGCGCATTTAATCTTGTTACACAACATTACTGCAAAATTGTATCATGTAAATAAAATGATGTACAGAGATATAGAATCATG

Function

NR:

description
AN1-type zinc finger protein 5-like isoform X2

GO:

id name namespace
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K24687 ZFAND5_6; AN1-type zinc finger protein 5/6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590859.2 True 2859 mRNA 0.45 7 19630925 19644968

Neighbor

gene id symbol gene type direction distance location
LOC110509769 smc5 coding upstream 4265 19619646 ~ 19626660 (+)
LOC110509766 LOC106566689 coding upstream 15030 19609602 ~ 19616511 (+)
tjp2a LOC106563322 coding upstream 31380 19563521 ~ 19599545 (+)
LOC110509762 LOC106566653 coding upstream 70162 19535663 ~ 19560763 (+)
LOC110509761 LOC106563368 coding upstream 96312 19532192 ~ 19534613 (+)
LOC110509340 LOC106563366 coding downstream 6784 19651752 ~ 19660001 (+)
slc30a5 slc30a5 coding downstream 21215 19666183 ~ 19672307 (+)
LOC100136690 LOC100136690 coding downstream 28198 19673166 ~ 19676413 (+)
LOC110509364 LOC106563314 coding downstream 160394 19805362 ~ 19806854 (+)
LOC110509774 LOC106563307 coding downstream 194698 19839666 ~ 19844815 (+)
LOC118936421 smc5 non-coding upstream 1801 19628508 ~ 19631851 (+)
G2161568 NA non-coding upstream 12509 19616722 ~ 19618416 (+)
G2161492 NA non-coding upstream 145597 19485098 ~ 19485328 (+)
G2161468 NA non-coding upstream 166293 19464274 ~ 19464632 (+)
G2161458 NA non-coding upstream 172563 19458157 ~ 19458362 (+)
G2161585 NA non-coding downstream 16560 19661528 ~ 19661731 (+)
G2161600 NA non-coding downstream 42533 19687501 ~ 19687838 (+)
G2161601 NA non-coding downstream 43905 19688873 ~ 19689146 (+)
G2161656 NA non-coding downstream 143931 19788899 ~ 19789132 (+)
G2161679 NA non-coding downstream 153122 19798090 ~ 19799509 (+)
LOC110509753 LOC106563373 other upstream 493357 19136428 ~ 19138160 (+)
LOC118945267 NA other upstream 562141 19066137 ~ 19068784 (+)
LOC110509751 LOC106563328 other upstream 565153 18962089 ~ 19065920 (+)
G2158499 LOC106563144 other upstream 2439797 17189344 ~ 17191128 (+)
G2161635 LOC106563312 other downstream 96846 19741814 ~ 19752743 (+)
G2161678 NA other downstream 150292 19795260 ~ 19797774 (+)
LOC110509811 LOC106563272 other downstream 1552950 21160126 ~ 21389662 (+)
G2163804 LOC106613263 other downstream 1955450 21600418 ~ 21601052 (+)
G2165628 LOC106563266 other downstream 3192103 22837071 ~ 22841481 (+)

Expression


Co-expression Network