LOC110509340 (LOC106563366)


Basic Information

Item Value
gene id LOC110509340
gene name LOC106563366
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 19651752 ~ 19660001 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590258.2
ATGCCTAGGAAGAGTGATGTGGCGGCAAAGATTGAGGATGTTGGAATCGAGATCGATGGGGACGTGAGTGACAGTGAGGatGACACCAGTCGAAGGAGAGGGAACAGAAGACCGGCAGCTGGCAGAGGAGGAGCCCGCGGCAGGGGCAAAAAGCCAgctgatgaggatgatgaggacGAGGATGAAGAGGAGGCCCCCAGAAACCGCAGAGGAGCCAATAAGAAGAAGGCTGCTAAGTCACGTGACACCGACGATGAAAGTGAGGATGACACCCCCAAGAGAAGACAAGGAAGAGCAGCAAATAAAGGAGCAGCaaacaaaaagaaaggaggaaagACCCAGGACAGTGACGAGGACAGCGAGGAGAAGGGGAACAAGAGAAACAAGAAGGGAGCCACGGGAAAGAAGGGGAAAGAAGAGGAGACCAAAGATAAGAAAGGAGATGCCAAAGGGAAGGGCAAAGGAAAGGAGAAGGAAGACGAGAaggacaagaagaagaagaagaagaaagagagcaGCTCAGACACAGACTCTAACACAGACTCAGAGGAAGAGTCCAtgtcagagggagagatggaacgactgaaggaggaggtggaggagaagaagaaggtcATAGCTATTATGAGGAACAAGCCCTGGCGAATGAAGAGGAGGCTGGTACATCTGAAAGAATGTCAAGAATTTGTGGATAAATTTGAAGGGGCTCTGGGAAAAGGAAAAGGCAGGAAGTTTTATGCTTATAAAGTCATGATGACGAAGAAATGGATCAAATTCCAAAGAGATTTTGAGAATTTCAAAACGACTTGCATACCATGGGAACGAAAGATAAAAGAGGTTGAAAGTCACTTTGGGTCCTCAGTTGCTTCCTACTTCATCTTCCTGCGCTGGATGTACGGCATGAACATGGTCCTCTTTGGCTTAACCTTCGGACTGGTTGTGATCCCAGAGGTTCTGATGGGACTTCCGTATGGATCCATTCCCAGAAAGACAGTGCCCAGAGCTGAGCAGCCCACTGCTCAAGACTACTCTGTCCTCATGGACTTCAACggGTATTGCAAATACTCAGTCCTCTTCTATGGTTACTACAACAACCAGAGGACCATTGGGCTGCTGAAGTTCCGCCTCCCGCTGTCTTACCTCATGGTAGGAGTGGGGACTTTTGGCTACAGCCTGATGGTGGTGATACGAACAATGGCTAAGAATGCTGACGTGGGCGGAGGGGACGGAGATGACGGGGAGTTCACCTTTGCCTGGAAGATGTTCACCAGCTGGGATTACCTCATCGGCAACGCCGAGACGGCTGACAACAAGTacgcctccatcaccaccagcttCAAGGAGTCCATCGTGGATGAGCAGGAGAACCAAAAGGATGAGAATATCCACCTGAGGAGGTTCCTGCGTGTGCTGGCCAACTTCATGATCATCTGCTGCCTGGGAGGAAGTGGCTACCTCATCTTCTTTGTGGTGAAGAGGTCCCAGGAATTTGCCAACAGGGACGACCTGAGCTGGTACGAGAAAAACGAGTTGGAGCTCATCATGTCCCTGTTGGGCCTGGTGTGTCCTCCCCTGTTTGAGACCATCGCTGAGCTGGAGGAGTACCACCCCCGGATCGCCCTCAAATGGCAGCTTGGGCGCATCTTTGCCCTCTTTTTGGGAAACCTCTACACTTTCCTGTTTGCCCTGTTTGATGAGGTCAACAACAAGCTTGAGGAGGAGGTGTCCATTAGGAATGCGTCCATCTGGGCCCAGAAGGAATACTATGCTAACTTCACCCTCTACAACAATGACACGGACACCACCCCGCCCCCCATGGACCCCTCTGATGTCATCAGGGGGCCATGCTGGGAGACCGCCGTCGGCATAGAGTTTGTGAAGCTGACCGTGTCAGACATCCAGGTGACCTACCTGACCATCCTGATTGGTGACTTTGCGCGGGCTGTCATTGTCAGGTTCCTCAACTACTGCTGGTGCTGGGACCTCGAAGCCACATATcCATCGTATGGAGAGTTTGACATCAGTGGTAACGTTCTTGGTCTGGTCTTCAACCAAGGAATGATCTGgaTGGGTGCATTCTATGCTCCAGGGCTGGTAGGGATAAACGTCctgcgtctcctctcctccatgtacTACCAGTGCTGGGCCGTAATGGCCACTAACGTGCCCCATGAGAGGGTCTTCAAAGCCTCCAAATCCAACAACTTCTACATGGGcctcctccttctcatcctctttCTCAGTCTACTGCCTGTGGTCTACACCATCATGACTTTGCCACCCTCATTTGACTGTGGGCCattcagTGGGAAGGCCAAGATGTTTGATGTCATCATGGAGACGATAGACCTGGACCTGCCTGCCTTTCTGGGAACACTGATGGGCTACGCAGCCAACCCTGGCCTCATTATACCAGCTGTGCTACTGATGGTACTGGCTATCTACTATTTGAACTCGGTATCTGAGGCGTACCAACATGCCAATGCGGAGCTGAAGAAGAAGATGCAGATGgcAAGAGATGAGGAGAAGAACAGGAGGAACAACACTGAAAGCACAGACCAGGTCATGAAGGACCTGGAGGACCTGCTCCCCAACCGCTCTCTCTTGCCCCCAGCTCCCCCACCAGAGACAGGTGCAGACAATAAAGCAGACCAAGGTGGAAAGTCTACAAAGGTGAGGCCAGGAACTGCAGGCAAGGATGTGAACCTGCAGAAAGACGTGTCCCTGTCATCACCAAATCCCAACGCTCGAGGCGCAGTGACCCGCCCACCGGGTCCCCGGGGGCCTGGACCTCTGCCTGGAAATGGTCAGCAGGGgccaggaggaggaccagggcgGGGACGGGGGAGAGGACAGCCACCTCCAAGACGCTAGCACCCAGATGAAAAATAAAAGTCAAGATTTTTTGTAAATCTAACAATTGTTTAACTAAagaatttgcaaatgtattgaattgTACAAGAAAGTGTTGGATTTGAGCTACTATTgcttaagaacaaattcacatTTTGGATTAGGTTGGggactgtacactgagtgtacaaaacattaaggacacttgctctttctatgacatagactgaccaggtgaatccaggtgaaagctgtgatcctttattgatgtcacttgttaaatccacttcaatcagtgtagatgaagggggggagacgggttgaagaaggatttttaagacttgagtcaattgagacatggattatgtgtgtgtgccattcagatgttgaatgggtaagacaaaagatttaagtgcctctgaatggggtatggtagtaggtgccaggcgcactggtttgagtcaagaacggagtttttcactctcaacagtttcctgtgtgtatcaagactggtccaccacccaaaggacatccagccaacttgacacaactgtgggtagCATTGGAGACAACAAGCATGGGAGACAACGTGGGCCGGCATCCATGTGTGGGgtggcaactcaatattaggaaggtgttcttaatgttttgtacactcagtgtataaagaGATATACAATTATTCAACTGCTATTGTGTCTTTATTGAGTTTGCCTTGTGTTTGAAACGGTTTGGAATAACAGATTTGGAAGGGTTGTGTTTGGAAAGGTTTGGGAAAACCCATTTCAACCTTTTATT

Function

NR:

description
transmembrane channel-like protein 2

GO: NA

KEGG:

id description
K21988 TMC; transmembrane channel-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590258.2 True 3651 mRNA 0.50 20 19651752 19660001

Neighbor

gene id symbol gene type direction distance location
LOC110509767 LOC105015049 coding upstream 6784 19630925 ~ 19644968 (+)
LOC118936421 smc5 coding upstream 19901 19628508 ~ 19631851 (+)
LOC110509769 smc5 coding upstream 25092 19619646 ~ 19626660 (+)
LOC110509766 LOC106566689 coding upstream 35857 19609602 ~ 19616511 (+)
tjp2a LOC106563322 coding upstream 52207 19563521 ~ 19599545 (+)
slc30a5 slc30a5 coding downstream 6182 19666183 ~ 19672307 (+)
LOC100136690 LOC100136690 coding downstream 13165 19673166 ~ 19676413 (+)
LOC110509364 LOC106563314 coding downstream 145361 19805362 ~ 19806854 (+)
LOC110509774 LOC106563307 coding downstream 179665 19839666 ~ 19844815 (+)
LOC110509777 NA coding downstream 187022 19847023 ~ 19849150 (+)
G2161568 NA non-coding upstream 33336 19616722 ~ 19618416 (+)
G2161492 NA non-coding upstream 166424 19485098 ~ 19485328 (+)
G2161468 NA non-coding upstream 187120 19464274 ~ 19464632 (+)
G2161458 NA non-coding upstream 193390 19458157 ~ 19458362 (+)
G2161585 NA non-coding downstream 1527 19661528 ~ 19661731 (+)
G2161600 NA non-coding downstream 27500 19687501 ~ 19687838 (+)
G2161601 NA non-coding downstream 28872 19688873 ~ 19689146 (+)
G2161656 NA non-coding downstream 128898 19788899 ~ 19789132 (+)
G2161679 NA non-coding downstream 138089 19798090 ~ 19799509 (+)
LOC110509753 LOC106563373 other upstream 514184 19136428 ~ 19138160 (+)
LOC118945267 NA other upstream 582968 19066137 ~ 19068784 (+)
LOC110509751 LOC106563328 other upstream 585980 18962089 ~ 19065920 (+)
G2158499 LOC106563144 other upstream 2460624 17189344 ~ 17191128 (+)
G2161635 LOC106563312 other downstream 81813 19741814 ~ 19752743 (+)
G2161678 NA other downstream 135259 19795260 ~ 19797774 (+)
LOC110509811 LOC106563272 other downstream 1537917 21160126 ~ 21389662 (+)
G2163804 LOC106613263 other downstream 1940417 21600418 ~ 21601052 (+)
G2165628 LOC106563266 other downstream 3177070 22837071 ~ 22841481 (+)

Expression


Co-expression Network