pmchl (LOC106563365)


Basic Information

Item Value
gene id pmchl
gene name LOC106563365
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 19716063 ~ 19716692 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590863.2
GCCTGAACGAGCTTGAGATCACGTCAACCTGCAACATCAACCTCTACGAAGATCTTCATTCTCCAAGATGAGAGACTCGGTCCTCTCCGTCATCTTTGCCTTGGCACTTTTCTTGGAGTGCTACACACCGTCCATGGCGATCCCGATGGGCAAGATGGAGGACACAGCCTTGGAGCAAGATACTCTAGACTCTCTACTGAACGAAGAGGTGGCCGATAAAAACCCTGATTCAGTCAGAAGCGGGAGCTCCAAGATCATCGTGTTGGCAGACTCAGGCATGTGGAAGAACCTGAACAGAGGACTTCCTCTCTACAAGCTGAAAGCTGCAGCTGCAGGGCTTGACAGAGCCCTGACCCTGGACCGCAGAGAGGCTGACCAGGACCTGAGCCCCAGCATCTCCATTGTCAGGAGGGACACCATGAGGTGCATGGTGGGAAGGGTGTACCGGCCTTGCTGGGAAGTGTAGATGTGACCAATGAGCTCGTCCCATCTCGTCATTAATCTGCCAGCCAGATCTACTATGCTGCATCTTGTCCTGCCTCATCTTGAGTTGTATGATATGATCTTTCGAGTATGTATTAATGTATTTAGACAAATTGATATCAGTCATTAAAAAGACAGAACACTGAA

Function

NR:

description
pro-MCH 2

GO:

id name namespace
GO:0007218 neuropeptide signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0030354 melanin-concentrating hormone activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590863.2 True 630 mRNA 0.50 1 19716063 19716692

Neighbor

gene id symbol gene type direction distance location
LOC110509765 LOC106563324 coding downstream 104838 19599862 ~ 19611225 (-)
LOC110509339 NA coding downstream 197163 19514805 ~ 19518900 (-)
LOC110509760 LOC106563325 coding downstream 207234 19502531 ~ 19508829 (-)
LOC110509759 LOC106563326 coding downstream 306620 19307783 ~ 19409443 (-)
LOC110509757 LOC106563370 coding downstream 439019 19275539 ~ 19277044 (-)
LOC100136307 LOC106563312 coding upstream 21893 19738585 ~ 19785892 (-)
LOC110509772 LOC106563313 coding upstream 63364 19780056 ~ 19792894 (-)
LOC110509773 LOC106563311 coding upstream 90568 19807260 ~ 19835269 (-)
LOC110509775 LOC106563308 coding upstream 120543 19837235 ~ 19840684 (-)
traf2 LOC106563303 coding upstream 166070 19882762 ~ 19905873 (-)
G2161886 NA non-coding downstream 9429 19706401 ~ 19706634 (-)
G2161877 NA non-coding downstream 20510 19695332 ~ 19695553 (-)
G2161873 NA non-coding downstream 28025 19687745 ~ 19688038 (-)
G2161870 NA non-coding downstream 32007 19683826 ~ 19684056 (-)
G2161862 ccnb1 non-coding downstream 39570 19674997 ~ 19676493 (-)
G2161945 NA non-coding upstream 130284 19846976 ~ 19847183 (-)
G2161904 NA non-coding upstream 163141 19879833 ~ 19881605 (-)
G2161908 NA non-coding upstream 165376 19882068 ~ 19882595 (-)
G2161969 NA non-coding upstream 223448 19940140 ~ 19940386 (-)
G2161970 NA non-coding upstream 224914 19941606 ~ 19941943 (-)
G2158111 akna other downstream 3069466 16643681 ~ 16646597 (-)
G2158088 LOC100136012 other downstream 3108057 16607625 ~ 16608006 (-)
G2157743 NA other downstream 3292642 16421677 ~ 16423421 (-)
G2157715 NA other downstream 3330018 16381190 ~ 16386045 (-)
G2162005 NA other upstream 267853 19984545 ~ 19984779 (-)
G2162127 NA other upstream 366453 20083145 ~ 20083618 (-)
LOC110509788 LOC106563294 other upstream 371538 20088225 ~ 20093695 (-)
G2162405 LOC106563289 other upstream 592497 20309189 ~ 20309802 (-)
G2162422 LOC106563345 other upstream 613056 20329748 ~ 20330138 (-)

Expression


Co-expression Network