Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110509772 |
| gene name | LOC106563313 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048593.1 |
| NCBI id | CM023247.2 |
| chromosome length | 47748341 |
| location | 19780056 ~ 19792894 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| anaphase-promoting complex subunit 2-like |
| id | name | namespace |
|---|---|---|
| GO:0006511 | ubiquitin-dependent protein catabolic process | biological_process |
| GO:0031461 | cullin-RING ubiquitin ligase complex | cellular_component |
| GO:0031625 | ubiquitin protein ligase binding | molecular_function |
| id | description |
|---|---|
| K03349 | APC2, ANAPC2; anaphase-promoting complex subunit 2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036968341.1 | False | 3019 | mRNA | 0.54 | 15 | 19780056 | 19792894 |
| XM_036968340.1 | False | 2977 | mRNA | 0.55 | 15 | 19786521 | 19792894 |
| XM_036968339.1 | False | 2954 | mRNA | 0.55 | 15 | 19786525 | 19792894 |
| XM_036968338.1 | True | 3372 | mRNA | 0.53 | 14 | 19786869 | 19792894 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| pmchl | LOC106563365 | coding | downstream | 63364 | 19716063 ~ 19716692 (-) |
| LOC110509765 | LOC106563324 | coding | downstream | 168831 | 19599862 ~ 19611225 (-) |
| LOC110509339 | NA | coding | downstream | 261156 | 19514805 ~ 19518900 (-) |
| LOC110509760 | LOC106563325 | coding | downstream | 271227 | 19502531 ~ 19508829 (-) |
| LOC110509759 | LOC106563326 | coding | downstream | 370613 | 19307783 ~ 19409443 (-) |
| LOC110509773 | LOC106563311 | coding | upstream | 14366 | 19807260 ~ 19835269 (-) |
| LOC110509775 | LOC106563308 | coding | upstream | 44341 | 19837235 ~ 19840684 (-) |
| traf2 | LOC106563303 | coding | upstream | 89868 | 19882762 ~ 19905873 (-) |
| LOC110509780 | LOC106563302 | coding | upstream | 153673 | 19946567 ~ 19950624 (-) |
| LOC110509785 | LOC106563298 | coding | upstream | 230234 | 20023128 ~ 20025908 (-) |
| G2161886 | NA | non-coding | downstream | 73422 | 19706401 ~ 19706634 (-) |
| G2161877 | NA | non-coding | downstream | 84503 | 19695332 ~ 19695553 (-) |
| G2161873 | NA | non-coding | downstream | 92018 | 19687745 ~ 19688038 (-) |
| G2161870 | NA | non-coding | downstream | 96000 | 19683826 ~ 19684056 (-) |
| G2161862 | ccnb1 | non-coding | downstream | 103563 | 19674997 ~ 19676493 (-) |
| G2161945 | NA | non-coding | upstream | 54082 | 19846976 ~ 19847183 (-) |
| G2161904 | NA | non-coding | upstream | 86939 | 19879833 ~ 19881605 (-) |
| G2161908 | NA | non-coding | upstream | 89174 | 19882068 ~ 19882595 (-) |
| G2161969 | NA | non-coding | upstream | 147246 | 19940140 ~ 19940386 (-) |
| G2161970 | NA | non-coding | upstream | 148712 | 19941606 ~ 19941943 (-) |
| LOC110509757 | LOC106563370 | other | downstream | 503050 | 19275539 ~ 19277044 (-) |
| G2158111 | akna | other | downstream | 3133459 | 16643681 ~ 16646597 (-) |
| G2158088 | LOC100136012 | other | downstream | 3172050 | 16607625 ~ 16608006 (-) |
| G2157743 | NA | other | downstream | 3356635 | 16421677 ~ 16423421 (-) |
| G2157715 | NA | other | downstream | 3394011 | 16381190 ~ 16386045 (-) |
| G2162005 | NA | other | upstream | 191651 | 19984545 ~ 19984779 (-) |
| G2162127 | NA | other | upstream | 290251 | 20083145 ~ 20083618 (-) |
| LOC110509788 | LOC106563294 | other | upstream | 295336 | 20088225 ~ 20093695 (-) |
| G2162405 | LOC106563289 | other | upstream | 516295 | 20309189 ~ 20309802 (-) |
| G2162422 | LOC106563345 | other | upstream | 536854 | 20329748 ~ 20330138 (-) |
