LOC110509364 (LOC106563314)


Basic Information

Item Value
gene id LOC110509364
gene name LOC106563314
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 19805362 ~ 19806854 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590267.2
acacacacatccttcatCCATCATAGGCTGGAATGGGCTGATTCAGTAGGAATGGCCTGCTGAGTGAGTGGGACCTCAGCTTAGACATCCGCCTCCCTTTTACATTGTGCACAACAAGTCTGACACGTATTTAGGAGGATAGGCTATAGGTCTCTAGGTTGTTTTCTCTTTGAAATACCCAGATTTTCTACAATTTTCATGATGTTCGGACTCGGAATGCAGGCCCAGGCTATATTTGATGGTAAGCCTTCATAATTATAAATAATTGATCTAGGCTACAGCTCAAACACTGTAAAAACCGAGAAGTTGTTTTCATGAGTACCTTGGTTGTTTCCACATTCCACCTCTTAACAGCCAGTGTTGTTTCTTTTACCTCAGGTATCGAGAAGCTGTGTTCTAAGAGGGATGAGCTGAACCGTCAGAtccagcaggaggaggaggagaagggtcgTCTGCAGCACGACATCCATGTCCTCACCGAGAAACTACGCCGCGTCAACGAGAGCCTGGCCCGACGACACTCCGTCCGCGCTGACTTTGACCACACCATCGGCGAGACCGAGGGTGCCTTTATGAAGATTCTGGAGAGCTGTCAAACACTGCTGAGTGTAATAAAGAAGGAAGCAGGAAATCTCGGCAAAGCCACTGAACCCGGAAGGAAAGACCACTGACATCCAGACTACcgctcctaaacctaacctctcaCCCAGGCACCAGCATTTCCCCTCACCCTTGTAACTGTGCACTgtttgtacactgaacaaaaatataaatgcaacatgcgaccatttcaaagattttactgagttacagttcatataaggaaatcagtcaatttaaataaattcattaggccctaatctaatttgaaggtgttcctaatatttgtatatacagtatatttatgtaAAATGTTTTGACTTTGTCTAATACTGCTGTTCACTGGCATACTTATTTTATACCAATTGAATCATTTTAATAAAGATGATCTGTGAAGAA
>XM_021590268.2
acacacacatccttcatCCATCATAGGCTGGAATGGGCTGATTCAGTAGGAATGGCCTGCTGAGTGAGTGGGACCTCAGCTTAGACATCCGCCTCCCTTTTACATTGTGCACAACAAGTCTGACACGTATTTAGGAGGATAGGCTATAGGTCTCTAGGTTGTTTTCTCTTTGAAATACCCAGATTTTCTACAATTTTCATGATGTTCGGACTCGGAATGCAGGCCCAGGCTATATTTGATGGTATCGAGAAGCTGTGTTCTAAGAGGGATGAGCTGAACCGTCAGAtccagcaggaggaggaggagaagggtcgTCTGCAGCACGACATCCATGTCCTCACCGAGAAACTACGCCGCGTCAACGAGAGCCTGGCCCGACGACACTCCGTCCGCGCTGACTTTGACCACACCATCGGCGAGACCGAGGGTGCCTTTATGAAGATTCTGGAGAGCTGTCAAACACTGCTGAGTGTAATAAAGAAGGAAGCAGGAAATCTCGGCAAAGCCACTGAACCCGGAAGGAAAGACCACTGACATCCAGACTACcgctcctaaacctaacctctcaCCCAGGCACCAGCATTTCCCCTCACCCTTGTAACTGTGCACTgtttgtacactgaacaaaaatataaatgcaacatgcgaccatttcaaagattttactgagttacagttcatataaggaaatcagtcaatttaaataaattcattaggccctaatctaatttgaaggtgttcctaatatttgtatatacagtatatttatgtaAAATGTTTTGACTTTGTCTAATACTGCTGTTCACTGGCATACTTATTTTATACCAATTGAATCATTTTAATAAAGATGATCTGTGAAGAA

Function

NR:

description
Sjoegren syndrome nuclear autoantigen 1-like isoform X2

GO: NA

KEGG:

id description
K16780 SSNA1; sjoegren syndrome nuclear autoantigen 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590267.2 False 999 mRNA 0.43 2 19805362 19806854
XM_021590268.2 True 862 mRNA 0.44 3 19805362 19806854

Neighbor

gene id symbol gene type direction distance location
LOC100136690 LOC100136690 coding upstream 128949 19673166 ~ 19676413 (+)
slc30a5 slc30a5 coding upstream 133055 19666183 ~ 19672307 (+)
LOC110509340 LOC106563366 coding upstream 145361 19651752 ~ 19660001 (+)
LOC110509767 LOC105015049 coding upstream 160394 19630925 ~ 19644968 (+)
LOC118936421 smc5 coding upstream 173511 19628508 ~ 19631851 (+)
LOC110509774 LOC106563307 coding downstream 32812 19839666 ~ 19844815 (+)
LOC110509777 NA coding downstream 40169 19847023 ~ 19849150 (+)
fbxw5 LOC106563306 coding downstream 53539 19860393 ~ 19873346 (+)
LOC118936353 NA coding downstream 97930 19904784 ~ 19908478 (+)
LOC110509779 coq4 coding downstream 114748 19921602 ~ 19928559 (+)
G2161680 NA non-coding upstream 5100 19799645 ~ 19800262 (+)
G2161679 NA non-coding upstream 5853 19798090 ~ 19799509 (+)
G2161656 NA non-coding upstream 16230 19788899 ~ 19789132 (+)
G2161601 NA non-coding upstream 116216 19688873 ~ 19689146 (+)
G2161600 NA non-coding upstream 117524 19687501 ~ 19687838 (+)
G2161705 NA non-coding downstream 50756 19857610 ~ 19857903 (+)
G2161667 NA non-coding downstream 66820 19873674 ~ 19874296 (+)
G2161661 NA non-coding downstream 73049 19879903 ~ 19880306 (+)
G2161662 NA non-coding downstream 99041 19905895 ~ 19928468 (+)
G2161678 NA other upstream 7588 19795260 ~ 19797774 (+)
G2161635 LOC106563312 other upstream 52619 19741814 ~ 19752743 (+)
LOC110509766 LOC106566689 other upstream 188851 19609602 ~ 19616511 (+)
LOC110509753 LOC106563373 other upstream 667794 19136428 ~ 19138160 (+)
LOC118945267 NA other upstream 736578 19066137 ~ 19068784 (+)
LOC110509811 LOC106563272 other downstream 1391064 21160126 ~ 21389662 (+)
G2163804 LOC106613263 other downstream 1793564 21600418 ~ 21601052 (+)
G2165628 LOC106563266 other downstream 3030217 22837071 ~ 22841481 (+)
G2165973 LOC106563265 other downstream 3318926 23125780 ~ 23134290 (+)
LOC110509345 LOC106563260 other downstream 3708768 23468400 ~ 23534217 (+)

Expression


Co-expression Network