LOC110509775 (LOC106563308)


Basic Information

Item Value
gene id LOC110509775
gene name LOC106563308
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 19837235 ~ 19840684 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002471482.2
GTTCCGTAAACGTGCAAGTTCCCGCGATAGTACACGGTAGATTTAAGTGACGGAATGAAAACATTATGAAAAGGCTAACCTGACACTTGAATCGGAattgagGCAGAACATCTTGATTCCATGAAGACATCCTCCACATGTGAAGCTCTTCATTGGCTCACAGTATTTCGTCCTCTCTGCCCCCACTGTCTTCAATGATGTAGGTGTGCTTGATCGTCTGTGCAGCAGTTCCTTGTTAAGGGCCATTTCCTATTGCCTTCTGTGGATTTCTGCCCAGACCTCAATGTCTCCCTTCCCTCACACTTTACCACCCTGAGTCTGGAAACGTCACATCTCCTGAGTAGAACCAGTGAGTCTACCCCATTCAGTCCCTGGTTGAACAGTCCACCTGAATCCACTCCCTCCACCCTAAGGCCATGCTGTTCTCCCTGCAGGAGCTGGTCCAATGGCTGGGCTTTGCCACGTTCGAGCTCTTCCTCCACCTGGGGGCTCTGCTGGTCTTCAGTGTGCTAGTAGCGCTGCGGGCTGACCTGTTTACCCCTGGCATGAGCTGGTGGCTGGTCTTCGTCCCTCTGTTTGCCGCTGATGGCCTCAGCACCTACTTCACGGCTATTGTATCCATCCGGCTGTACCAGGAGAATGAGAAAAGGCTAGCAGTGCTGAGGCTGCTGTGGGTGCTGATGGTGCTCGGCCTCAAGCTGGTGTGTGAGGTGCTGCTGTGCCAGAAGTTGGTTGAGCAGGAACAGGCACGCGACCTGTGGTTTGGTCCTATCGTCTCACCGCTCTTCATCCTCCTGCAGCTACTGATGATCCGCGCCTGCCGTATCAACTGATTCCAAGGGCGGTGTGATGAGGGCAGGAGTCGTTTATCAGCCGTAGAAGATCCAGGTTTATTCATACTAGtaccaatcaaagtaccttatcctctgcagcagatgtaactctgggtcttcctttcctttggcggtcttcatgagagtgcttgatgattttt
>XM_036967570.1
GACAAAGGCGTCTTGTAGGGGGGAGTTTTGTGAAGATCCCCAACGctcggtctgaacattaacatgCATTGCTTGCCGTACGGATTTGGACGCTTAAGgacttatctttcatatcagcaagaaaaagaaaaaaaagGCAGAACATCTTGATTCCATGAAGACATCCTCCACATGTGAAGCTCTTCATTGGCTCACAGTATTTCGTCCTCTCTGCCCCCACTGTCTTCAATGATGTAGGTGTGCTTGATCGTCTGTGCAGCAGTTCCTTGTTAAGGGCCATTTCCTATTGCCTTCTGTGGATTTCTGCCCAGACCTCAATGTCTCCCTTCCCTCACACTTTACCACCCTGAGTCTGGAAACGTCACATCTCCTGAGTAGAACCAGTGAGTCTACCCCATTCAGTCCCTGGTTGAACAGTCCACCTGAATCCACTCCCTCCACCCTAAGGCCATGCTGTTCTCCCTGCAGGAGCTGGTCCAATGGCTGGGCTTTGCCACGTTCGAGCTCTTCCTCCACCTGGGGGCTCTGCTGGTCTTCAGTGTGCTAGTAGCGCTGCGGGCTGACCTGTTTACCCCTGGCATGAGCTGGTGGCTGGTCTTCGTCCCTCTGTTTGCCGCTGATGGCCTCAGCACCTACTTCACGGCTATTGTATCCATCCGGCTGTACCAGGAGAATGAGAAAAGGCTAGCAGTGCTGAGGCTGCTGTGGGTGCTGATGGTGCTCGGCCTCAAGCTGGTGTGTGAGGTGCTGCTGTGCCAGAAGTTGGTTGAGCAGGAACAGGCACGCGACCTGTGGTTTGGTCCTATCGTCTCACCGCTCTTCATCCTCCTGCAGCTACTGATGATCCGCGCCTGCCGTATCAACTGATTCCAAGGGCGGTGTGATGAGGGCAGGAGTCGTTTATCAGCCGTAGAAGATCCAGGTTTATTCATACTAGGTGACTGTTTTAATTAACTGAATATTGAGAAATAGTTTTGTACTAATGGCTGGAGAGATGAGGGTCACAGGCTTCCCCTCCATTTTTAACCTTGTCTGAGGACAGTGTGACAGAATGTGTTTTCCATGAGCAGTCCTTTGTCAGTATGGCTCTCCTGGACATTGCTTCCTGTGGATACCTTTTTTTGTGTTTGATCTGTTATGGACCTCTTGCTCAAGCATGTATTGATGGCCTCATTTTATCCTTCATTGTAATTTATTTCCTGATGTGATGCGGGAGAGGGACATTTGAGAATTGAAGTAATTGGTCTTTTGAATTTGGTAAGACTCTGCAGCTTTGTTTGTTTTAGCCCATTTATtatgttcttgtttttgttacCCTTGTTGTGTTTCtctatacagtaccaatcaaagtaccttatcctctgcagcagatgtaactctgggtcttcctttcctttggcggtcttcatgagagtgcttgatga
>XM_021590873.2
AAATTGTTCCGTAAACGTGCAAGTTCCCGCGATAGTACACGGTAGATTTAAGTGACGGAATGAAAACATTATGAAAAGGCTAACCTGACACTTGAATCGGAattgagGTGTGCTTGATCGTCTGTGCAGCAGTTCCTTGTTAAGGGCCATTTCCTATTGCCTTCTGTGGATTTCTGCCCAGACCTCAATGTCTCCCTTCCCTCACACTTTACCACCCTGAGTCTGGAAACGTCACATCTCCTGAGTAGAACCAGTGAGTCTACCCCATTCAGTCCCTGGTTGAACAGTCCACCTGAATCCACTCCCTCCACCCTAAGGCCATGCTGTTCTCCCTGCAGGAGCTGGTCCAATGGCTGGGCTTTGCCACGTTCGAGCTCTTCCTCCACCTGGGGGCTCTGCTGGTCTTCAGTGTGCTAGTAGCGCTGCGGGCTGACCTGTTTACCCCTGGCATGAGCTGGTGGCTGGTCTTCGTCCCTCTGTTTGCCGCTGATGGCCTCAGCACCTACTTCACGGCTATTGTATCCATCCGGCTGTACCAGGAGAATGAGAAAAGGCTAGCAGTGCTGAGGCTGCTGTGGGTGCTGATGGTGCTCGGCCTCAAGCTGGTGTGTGAGGTGCTGCTGTGCCAGAAGTTGGTTGAGCAGGAACAGGCACGCGACCTGTGGTTTGGTCCTATCGTCTCACCGCTCTTCATCCTCCTGCAGCTACTGATGATCCGCGCCTGCCGTATCAACTGATTCCAAGGGCGGTGTGATGAGGGCAGGAGTCGTTTATCAGCCGTAGAAGATCCAGGTTTATTCATACTAGGTGACTGTTTTAATTAACTGAATATTGAGAAATAGTTTTGTACTAATGGCTGGAGAGATGAGGGTCACAGGCTTCCCCTCCATTTTTAACCTTGTCTGAGGACAGTGTGACAGAATGTGTTTTCCATGAGCAGTCCTTTGTCAGTATGGCTCTCCTGGACATTGCTTCCTGTGGATACCTTTTTTTGTGTTTGATCTGTTATGGACCTCTTGCTCAAGCATGTATTGATGGCCTCATTTTATCCTTCATTGTAATTTATTTCCTGATGTGATGCGGGAGAGGGACATTTGAGAATTGAAGTAATTGGTCTTTTGAATTTGGTAAGACTCTGCAGCTTTGTTTGTTTTAGCCCATTTATtatgttcttgtttttgttacCCTTGTTGTGTTTCtctatacagtaccaatcaaagtaccttatcctctgcagcagatgtaactctgggtcttcctttcctttggcggtcttcatgagagtgcttgatga
>XR_005040396.1
GTTCCGTAAACGTGCAAGTTCCCGCGATAGTACACGGTAGATTTAAGTGACGGAATGAAAACATTATGAAAAGGCTAACCTGACACTTGAATCGGAattgagGCAGAACATCTTGATTCCATGAAGACATCCTCCACATGTGAAGCTCTTCATTGGCTCACAGTATTTCGTCCTCTCTGCCCCCACTGTCTTCAATGATGTAGGTGTGCTTGATCGTCTGTGCAGCAGTTCCTTGTTAAGGGCCATTTCCTATTGCCTTCTGTGGATTTCTGCCCAGACCTCAATGTCTCCCTTCCCTCACACTTTACCACCCTGAGTCTGGAAACGTCACATCTCCTGAGTAGAACCAGAGCTGGTCCAATGGCTGGGCTTTGCCACGTTCGAGCTCTTCCTCCACCTGGGGGCTCTGCTGGTCTTCAGTGTGCTAGTAGCGCTGCGGGCTGACCTGTTTACCCCTGGCATGAGCTGGTGGCTGGTCTTCGTCCCTCTG

Function

NR:

description
transmembrane protein 203-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002471482.2 False 994 mRNA 0.52 3 19837235 19840679
XM_036967570.1 False 1424 mRNA 0.48 2 19837240 19840165
XM_021590873.2 False 1294 mRNA 0.48 2 19837240 19840684
XR_005040396.1 True 490 mRNA 0.51 3 19838055 19840679

Neighbor

gene id symbol gene type direction distance location
LOC110509773 LOC106563311 coding downstream 1966 19807260 ~ 19835269 (-)
LOC110509772 LOC106563313 coding downstream 44341 19780056 ~ 19792894 (-)
LOC100136307 LOC106563312 coding downstream 51343 19738585 ~ 19785892 (-)
pmchl LOC106563365 coding downstream 120543 19716063 ~ 19716692 (-)
LOC110509765 LOC106563324 coding downstream 226010 19599862 ~ 19611225 (-)
traf2 LOC106563303 coding upstream 42078 19882762 ~ 19905873 (-)
LOC110509780 LOC106563302 coding upstream 105883 19946567 ~ 19950624 (-)
LOC110509785 LOC106563298 coding upstream 182444 20023128 ~ 20025908 (-)
LOC110509787 LOC106563295 coding upstream 210111 20050795 ~ 20063783 (-)
LOC110509788 LOC106563294 coding upstream 247541 20088225 ~ 20093695 (-)
G2161886 NA non-coding downstream 130601 19706401 ~ 19706634 (-)
G2161877 NA non-coding downstream 141682 19695332 ~ 19695553 (-)
G2161873 NA non-coding downstream 149197 19687745 ~ 19688038 (-)
G2161870 NA non-coding downstream 153179 19683826 ~ 19684056 (-)
G2161862 ccnb1 non-coding downstream 160742 19674997 ~ 19676493 (-)
G2161945 NA non-coding upstream 6292 19846976 ~ 19847183 (-)
G2161904 NA non-coding upstream 39149 19879833 ~ 19881605 (-)
G2161908 NA non-coding upstream 41384 19882068 ~ 19882595 (-)
G2161969 NA non-coding upstream 99456 19940140 ~ 19940386 (-)
G2161970 NA non-coding upstream 100922 19941606 ~ 19941943 (-)
LOC110509757 LOC106563370 other downstream 560229 19275539 ~ 19277044 (-)
G2158111 akna other downstream 3190638 16643681 ~ 16646597 (-)
G2158088 LOC100136012 other downstream 3229229 16607625 ~ 16608006 (-)
G2157743 NA other downstream 3413814 16421677 ~ 16423421 (-)
G2157715 NA other downstream 3451190 16381190 ~ 16386045 (-)
G2162005 NA other upstream 143861 19984545 ~ 19984779 (-)
G2162127 NA other upstream 242461 20083145 ~ 20083618 (-)
G2162405 LOC106563289 other upstream 468505 20309189 ~ 20309802 (-)
G2162422 LOC106563345 other upstream 489064 20329748 ~ 20330138 (-)

Expression


Co-expression Network