traf2 (LOC106563303)


Basic Information

Item Value
gene id traf2
gene name LOC106563303
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 19882762 ~ 19905873 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124393.2
GGAAAGCTGTATGAGACGTTGATGGAGAGGCATGGCCCGCATATCTCTACCCTCTTTGGACTCCTCCCTTCCAGGGATACCCCAAAGTGTCCTGGCTGTTTCCATGGAAGCGAAGTACCAATGCCAGCAGTGTCACCAGGTCCTGAGGAAGCCAGTCCAGGCTCAGTGTGGACATCGTTTCTGTGTCCATTGTTTCAAACTGCTCACCAGCTCCGGCCCAAAGCCCTGTGAAGCCTGTCGACAGGAGGAGATATATGAGGAGCCACAGTCCATTCTCAATAGTAATGAGGCTTTTCCAGACAATGCAGCTGGTAGAGAAATCGCCAGCCTGCCTGCCAAATGTATCAGTGAGGGATGCTCTTGGACTGGTTGCATAAAAGAATATGAGGCACAACACGAGGGCAAGTGTGAGTATGAGCGAGTACCATGTGAAACCTGCCAGGTCCTCATCCTGCGCAGTGAAAAAGAGAGGCATAATGAGAGAGAATGTGAAGCAAGGACATTGAACTGCAAGTACTGCAAAGTCTCCTTCAACTTCAAGGAAATCAAGGCTCATGATGAAATCTGCCAGAAGTTTCCCATGCAGTGCAAGGACTGTGGAAAGAAAAAGATCCCACGGGAAAAGTTTCTAGATCACAGCAGATCCTGTGCCAAGTCTAAGACTGCATGTCCGTTCAGTGAGGTCGGCTGCAAGGTTGTGATTGATAATGGGAAGCACAGTGACCACGAGCAGACTAGTGTCATGGAGCACCTGCGTCTGATCCTGGCGACGATGTCTCTGGTGCGGCTTCAGCGTCCAGAGGCCCCAGGGCTGGGGGAGTGGCAGGAGGACTCTGGGCTGGGCCTGTACCGCGCTCCCGAGGATGGAGCCACAGCTACTGCAGCCACAGATGGGGGAGGAGCTGCTGCCTCTGGACAGACCTTTGGTCTTGACCACAAGGTGAGAGCACTGGAGAATATAGTGTGTGTACTGAACAGGGAAGTAGAGAGGAGTTCTCTCACTTTAGAGGCCTTCTCACGGCAACATCGTCTAGACCAAGACAAGATTGAGAACCTCGGCAACAAGGTACGTCAACTAGAGCGTACTCTCACCATGCGGGACCTACAACTGGCTGAGACAGACCAGACTCTGAGAGAACTCCAGTTTTGCACCTTTGATGGTGTCTTTGTCTGGAAGATCGCCGACTTCTCACGGCGCCGCCAGGATGCTGTGGCCGGGCGAACACCCGCTATGTTCTCACCAGCATTCTACTCAAGTAAATATGGCTATAAGATGTGTCTGAGACTGTATCTGAATGGGGACGGAACGGGTCGAGGGACTCACCTTTCTCTTTTCTTCGTGGTGATGAGGGGCAAGTGTGACGCTCTGCTCAAATGGCCCTTCAGTCAGAAGGTGACACTGATGCTGCTGGATCAGAATAACAGGGAGCATATCATTGATGCCTTCCGGCCTGATGTAAGCTCCACCTCTTTCCAGCGGCCAATCAGTGAGATGAACATAGCCAGTGGCTGCCCACTCTTCTGCCCATTGGCTAAACTGGCAGGCAAGAGCTCCTACCTTAGGGATGACACCATTTTCATCAAGGCCATTGTAGACCTCACAGGCCTGTAGTGACTGTGGAAGTCAAAGGCTTGTAGAAGTGGTGGTCAAAGGTCTGTAGAAACAGGAAGGGGTAGTTAAAGGCCCAAAAATGCACagcagaaaaacacacacaatgatgACTTATGaccataaaatacatttaattataaatatattaaataatataatataattataagcATAATCTAGGCAGTGTCTATTTAGCCAGCTAACAGCATTTGAATAAACTCAGGTGGGTCAGAAATTCTCTCAGGGAGAGCGCTATCTCAAGCGTTCGGTCCATTCGTCAGATCTGCAGGATTATATAGATATTGTGAATTGTATTCATTGAAGGCACTGGGAGTCACATTTGTGGAACCATCAAGTGTGCAGGATGCACCACCAGTTGCATGATAAGGCATTTACAGGGTATTTCCaacatattgttaatcagattgCAATGGAGGGTCTAGTCCACCCCATATGGGCCATCTACAAGTGACGTATTGTTCACCATAGTTCACACTGTAATATTTAAAGTGATAGTTACAGAGTCTTATAGTGGATGTCAGAAATAGATCTCGCATATGGGACAATGGAGCGCCCTTCACTGGTAACGAAAAGAGAGATCAGTAGATTGGACACCATTGCCTTG
>XM_021590205.2
CAGCAATTTACTGCTAGTGTACAGTCACCGTAATAAGTCACGTGGGCTGGTGTTGCAAAGCAACAGAAAAAGTACAGCACAAAAAGCTGTAGTACATTGGGCCTTAATTTGGAAAGCTGTATGAGACGTTGATGGAGAGGCATGGCCCGCATATCTCTACCCTCTTTGGACTCCTCCCTTCCAGGGATACCCCAAAGTGTCCTGGCTGTTTCCATGGAAGCGAAGTACCAATGCCAGCAGTGTCACCAGGTCCTGAGGAAGCCAGTCCAGGCTCAGTGTGGACATCGTTTCTGTGTCCATTGTTTCAAACTGCTCACCAGCTCCGGCCCAAAGCCCTGTGAAGCCTGTCGACAGGAGGAGATATATGAGGAGCCACAGTCCATTCTCAATAGTAATGAGGCTTTTCCAGACAATGCAGCTGGTAGAGAAATCGCCAGCCTGCCTGCCAAATGTATCAGTGAGGGATGCTCTTGGACTGGTTGCATAAAAGAATATGAGGCACAACACGAGGGCAAGTGTGAGTATGAGCGAGTACCATGTGAAACCTGCCAGGTCCTCATCCTGCGCAGTGAAAAAGAGAGGCATAATGAGAGAGAATGTGAAGCAAGGACATTGAACTGCAAGTACTGCAAAGTCTCCTTCAACTTCAAGGAAATCAAGGCTCATGATGAAATCTGCCAGAAGTTTCCCATGCAGTGCAAGGACTGTGGAAAGAAAAAGATCCCACGGGAAAAGTTTCTAGATCACAGCAGATCCTGTGCCAAGTCTAAGACTGCATGTCCGTTCAGTGAGGTCGGCTGCAAGGTTGTGATTGATAATGGGAAGCACAGTGACCACGAGCAGACTAGTGTCATGGAGCACCTGCGTCTGATCCTGGCGACGATGTCTCTGGTGCGGCTTCAGCGTCCAGAGGCCCCAGGGCTGGGGGAGTGGCAGGAGGACTCTGGGCTGGGCCTGTACCGCGCTCCCGAGGATGGAGCCACAGCTACTGCAGCCACAGATGGGGGAGGAGCTGCTGCCTCTGGACAGACCTTTGGTCTTGACCACAAGGTGAGAGCACTGGAGAATATAGTGTGTGTACTGAACAGGGAAGTAGAGAGGAGTTCTCTCACTTTAGAGGCCTTCTCACGGCAACATCGTCTAGACCAAGACAAGATTGAGAACCTCGGCAACAAGGTACGTCAACTAGAGCGTACTCTCACCATGCGGGACCTACAACTGGCTGAGACAGACCAGACTCTGAGAGAACTCCAGTTTTGCACCTTTGATGGTGTCTTTGTCTGGAAGATCGCCGACTTCTCACGGCGCCGCCAGGATGCTGTGGCCGGGCGAACACCCGCTATGTTCTCACCAGCATTCTACTCAAGTAAATATGGCTATAAGATGTGTCTGAGACTGTATCTGAATGGGGACGGAACGGGTCGAGGGACTCACCTTTCTCTTTTCTTCGTGGTGATGAGGGGCAAGTGTGACGCTCTGCTCAAATGGCCCTTCAGTCAGAAGGTGACACTGATGCTGCTGGATCAGAATAACAGGGAGCATATCATTGATGCCTTCCGGCCTGATGTAAGCTCCACCTCTTTCCAGCGGCCAATCAGTGAGATGAACATAGCCAGTGGCTGCCCACTCTTCTGCCCATTGGCTAAACTGGCAGGCAAGAGCTCCTACCTTAGGGATGACACCATTTTCATCAAGGCCATTGTAGACCTCACAGGCCTGTAGTGACTGTGGAAGTCAAAGGCTTGTAGAAGTGGTGGTCAAAGGTCTGTAGAAACAGGAAGGGGTAGTTAAAGGCCCAAAAATGCACagcagaaaaacacacacaatgatgACTTATGaccataaaatacatttaattataaatatattaaataatataatataattataagcATAATCTAGGCAGTGTCTATTTAGCCAGCTAACAGCATTTGAATAAACTCAGGTGGGTCAGAAATTCTCTCAGGGAGAGCGCTATCTCAAGCGTTCGGTCCATTCGTCAGATCTGCAGGATTATATAGATATTGTGAATTGTATTCATTGAAGGCACTGGGAGTCACATTTGTGGAACCATCAAGTGTGCAGGATGCACCACCAGTTGCATGATAAGGCATTTACAGGGTATTTCCaacatattgttaatcagattgCAATGGAGGGTCTAGTCCACCCCATATGGGCCATCTACAAGTGACGTATTGTTCACCATAGTTCACACTGTAATATTTAAAGTGATAGTTACAGAGTCTTATAGTGGATGTCAGAAATAGATCTCGCATATGGGACAATGGAGCGCCCTTCACTGGTAACGAAAAGAGAGATCAGTAGATTGGACACCATTGCCTTG

Function

NR:

description
tumor necrosis factor receptor associated factor 2 isoform X1

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process
GO:0007250 activation of NF-kappaB-inducing kinase activity biological_process
GO:0046328 regulation of JNK cascade biological_process
GO:0033209 tumor necrosis factor-mediated signaling pathway biological_process
GO:0051865 protein autoubiquitination biological_process
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K03173 TRAF2; TNF receptor-associated factor 2

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124393.2 False 2237 mRNA 0.49 10 19882762 19903442
XM_021590205.2 True 2347 mRNA 0.48 11 19882762 19905873
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110509775 LOC106563308 coding downstream 42078 19837235 ~ 19840684 (-)
LOC110509773 LOC106563311 coding downstream 47493 19807260 ~ 19835269 (-)
LOC110509772 LOC106563313 coding downstream 89868 19780056 ~ 19792894 (-)
LOC100136307 LOC106563312 coding downstream 96870 19738585 ~ 19785892 (-)
pmchl LOC106563365 coding downstream 166070 19716063 ~ 19716692 (-)
LOC110509780 LOC106563302 coding upstream 40694 19946567 ~ 19950624 (-)
LOC110509785 LOC106563298 coding upstream 117255 20023128 ~ 20025908 (-)
LOC110509787 LOC106563295 coding upstream 144922 20050795 ~ 20063783 (-)
LOC110509788 LOC106563294 coding upstream 182352 20088225 ~ 20093695 (-)
lman2la lman2l coding upstream 233083 20138956 ~ 20143762 (-)
G2161908 NA non-coding downstream 167 19882068 ~ 19882595 (-)
G2161904 NA non-coding downstream 1157 19879833 ~ 19881605 (-)
G2161945 NA non-coding downstream 35579 19846976 ~ 19847183 (-)
G2161886 NA non-coding downstream 176128 19706401 ~ 19706634 (-)
G2161877 NA non-coding downstream 187209 19695332 ~ 19695553 (-)
G2161969 NA non-coding upstream 34267 19940140 ~ 19940386 (-)
G2161970 NA non-coding upstream 35733 19941606 ~ 19941943 (-)
G2161972 NA non-coding upstream 38932 19944805 ~ 19945080 (-)
G2161975 NA non-coding upstream 46438 19952311 ~ 19952624 (-)
G2161978 NA non-coding upstream 50034 19955907 ~ 19956217 (-)
LOC110509757 LOC106563370 other downstream 605756 19275539 ~ 19277044 (-)
G2158111 akna other downstream 3236165 16643681 ~ 16646597 (-)
G2158088 LOC100136012 other downstream 3274756 16607625 ~ 16608006 (-)
G2157743 NA other downstream 3459341 16421677 ~ 16423421 (-)
G2157715 NA other downstream 3496717 16381190 ~ 16386045 (-)
G2162005 NA other upstream 78672 19984545 ~ 19984779 (-)
G2162127 NA other upstream 177272 20083145 ~ 20083618 (-)
G2162405 LOC106563289 other upstream 403316 20309189 ~ 20309802 (-)
G2162422 LOC106563345 other upstream 423875 20329748 ~ 20330138 (-)

Expression

traf2(LOC106563303) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 10.
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traf2(LOC106563303) Expression in each Bioproject

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traf2(LOC106563303) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 150.
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Co-expression Network