LOC110509780 (LOC106563302)


Basic Information

Item Value
gene id LOC110509780
gene name LOC106563302
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 19946567 ~ 19950624 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036968090.1
aggaggtcaaaacaatGGTAGGCTATAACAAGTACACGGGAACCAAAAACCTTATAATTGAAACGGCCTTGTTGCTAAACTTGCTTTTCAGCTCTGACCTTTAGTGTCGGTGTTACTTCCGTGTTCATACCTTGATACACCTGTGTTATAGGTGCGGTAGATAGTGATACTTAAGCCACCTGCTACGTTCTATTGCTATTACTCTTGTAGACTATTTTACGTAACATGAGCGCGGAGCCAGGATCATGTCATTCAACACCTGGGTGCTCTTTACAGGACGACCGAGACACTGAAGTAGAAGTTACAGAAAGTTCGAGAAACTTGAATATGGATTTACAACAGCCCATTTTATCCGCGTTGAATGTACTCCGGAATGAAATTCGATCAGCTAAAGAGGACTCCGGGTTGTCTGGAAAGGCTGCGGTGACCTCCTCCGACTCAGAATCGGGTATATTCTCCGGTGAATCGGAACTTTGCGTGGAACATGAATCAGACCTGGACTGGTTCTGCTGCTCCGAGCAGAAACTCATATGCTCGCACTGCACCATAGTGGGATCCTGCCAGGGACACACGGTGATAGCCCTGGCCAACAGAGTGACAGCAGTCAGGaaccACCTGGTTGACGTGTGTGAGAAAATGCAGCTGCAGGCCCTGCGCATCGAGCACTTTATCAACAAGACTCTGACTGCCAAAGAGCGGGCACTGCAGGTGGAGGCGAGCGGGGCTCGGGAGCGAGTGGTGGCACAGACCTCTGGCCAAGAAATAGCtgacagGGTTGAGGATGCAGAGGGGGTGGGTGAACCCTGTGACACAGACCGGCTCAACCTGAATGCAGGTTGCAGTGACAGCAAACTCATGAGGGGCCTGTGGGCCAGCGCCATACTGCTGGGGCCAATTGCTTATGGTTCAGCACATCTGACATTTGACGAGCGCACCGTCAGCTCCCTACTGTCCCTCTCAGAAGACCTTTGCACTCTGACCTTCCTGCCTAAGAGGTCACGCCAGTCCCCGCCCTACGACCCGGCGCGCTTCGACAGCTGGCCCAATGCGCTGGGCACCCTGTCAATCTCCTCCGGCACCCACAGCTGGGTGATGGACGTGGGTGAAAGCGGGGCCTTCAAGGTGGGGGTATGCTACACCAGTATGGGGCGTAAGGGCTCGGGCAACAACTCCCGCCTGGGCTACAATGGCCAGTCCTGGGTGCTCTCCAAATATGATGGGGACTTCTCCTTCTGCCATGCGGGGAAGAACACACCCCTGCACGTGATCCACAAGCCCAAGAGTCTAGGGCTGCTCCTGGACTGGCCCAGTCAGACCCTGGTATTTTATGACCCAGACTCCAGTGCCGTGTTGCACTCTGTCAGACACACCTTCAGTGGCCCGCTGCTGCCTGCATTCGCCGTGGCTGACCGTAGTGTCACCATACTGCACTGCCCTCCGAAGTAACCGTCTATAGTGCCATTGATATAGAATTACAATTACGGATAACACTTTCAGAAGACATATCTTATGAGTTGATAATATAACATTGTAAGGGCCTATTAATGCTCATAACAAGTAATAATGCATTATACCTGCTGATAAAATCTTACTGAATTACTAATATTTGTACGTAAttctaatagaatagaatactaaTCAAAGCTTCACAATGTATTTGAATGGAATCAAATTTCTGTCTGCATTGATGAGGTATGCAGCCAGTTCTCCTTTGTTAAGGAACATATTTCTAATTTATTCTTTGTTTATCTGAAGTACTGCTTCTGTATAGATTTCTGTAGATCAAATTATACTGTAGTCCTAATGTGTCCGTGATTAATTTGTTGTGAAGTCTGTCCCAAACTCTTAATTTAAGTTTTAGAAGTATGCTATTTATATTTATTGCACTTTTATGATCTGATAATCATTTTTGATAACTTCAGTGAATGTTTTCTACCTTTTCGAGAGACACCTGTTTGCGGAACTGGTTGATCCAGAAGTTGCTCAGTGTGCTTGCTACCtgtcaaatgtattaaaatatttTTGATTGTCTGATA
>XM_036968089.1
aaggaggtcaaaacaatGGTAGGCTATAACAAGTACACGGGAACCAAAAACCTTATAATTGAAACGGCCTTGTTGCTAAACTTGCTTTTCAGCTCTGACCTTTAGTGTCGGTGTTACTTCCGTGTTCATACCTTGATACACCTGTGTTATAGGTGCGGTAGATAGTGATACTTAAGCCACCTGCTACGTTCTATTGCTATTACTCTTGTAGACTATTTTACGTAACATGAGCGCGGAGCCAGGATCATGTCATTCAACACCTGGGTGCTCTTTACAGGACGACCGAGACACTGAAGTAGAAGTTACAGAAAGTTCGAGAAACTTGAATATGGATTTACAACAGCCCATTTTATCCGCGTTGAATGTACTCCGGAATGAAATTCGATCAGCTAAAGAGGACTCCGGGTTGTCTGGAAAGGCTGCGGTGACCTCCTCCGACTCAGAATCGGGTATATTCTCCGGTGAATCGGAACTTTGCGTGGAACATGAATCAGACCTGGACTGGTTCTGCTGCTCCGAGCAGAAACTCATATGCTCGCACTGCACCATAGTGGGATCCTGCCAGGGACACACGGTGATAGCCCTGGCCAACAGAGTGACAGCAGTCAGGaaccACCTGGTTGACGTGTGTGAGAAAATGCAGCTGCAGGCCCTGCGCATCGAGCACTTTATCAACAAGACTCTGACTGCCAAAGAGCGGGCACTGCAGGTGGAGGCGAGCGGGGCTCGGGAGCGAGTGGTGGCACAGGTCAGTGTGGTGAGGGAggcggtggaggaggaggagcagcggcTGCTAGAAGCcgtgcagagggaggaggagagggtggagcagTGCCTACTCACTCAGAGAGCCCACTGGGGCCAGGCCCTAGCTATgctcacacagacacgcacacgccTGGTGcacactctcacaaacacaccgGACATACAGCTGGCGACCTCTGGCCAAGAAATAGCtgacagGGTTGAGGATGCAGAGGGGGTGGGTGAACCCTGTGACACAGACCGGCTCAACCTGAATGCAGGTTGCAGTGACAGCAAACTCATGAGGGGCCTGTGGGCCAGCGCCATACTGCTGGGGCCAATTGCTTATGGTTCAGCACATCTGACATTTGACGAGCGCACCGTCAGCTCCCTACTGTCCCTCTCAGAAGACCTTTGCACTCTGACCTTCCTGCCTAAGAGGTCACGCCAGTCCCCGCCCTACGACCCGGCGCGCTTCGACAGCTGGCCCAATGCGCTGGGCACCCTGTCAATCTCCTCCGGCACCCACAGCTGGGTGATGGACGTGGGTGAAAGCGGGGCCTTCAAGGTGGGGGTATGCTACACCAGTATGGGGCGTAAGGGCTCGGGCAACAACTCCCGCCTGGGCTACAATGGCCAGTCCTGGGTGCTCTCCAAATATGATGGGGACTTCTCCTTCTGCCATGCGGGGAAGAACACACCCCTGCACGTGATCCACAAGCCCAAGAGTCTAGGGCTGCTCCTGGACTGGCCCAGTCAGACCCTGGTATTTTATGACCCAGACTCCAGTGCCGTGTTGCACTCTGTCAGACACACCTTCAGTGGCCCGCTGCTGCCTGCATTCGCCGTGGCTGACCGTAGTGTCACCATACTGCACTGCCCTCCGAAGTAACCGTCTATAGTGCCATTGATATAGAATTACAATTACGGATAACACTTTCAGAAGACATATCTTATGAGTTGATAATATAACATTGTAAGGGCCTATTAATGCTCATAACAAGTAATAATGCATTATACCTGCTGATAAAATCTTACTGAATTACTAATATTTGTACGTAAttctaatagaatagaatactaaTCAAAGCTTCACAATGTATTTGAATGGAATCAAATTTCTGTCTGCATTGATGAGGTATGCAGCCAGTTCTCCTTTGTTAAGGAACATATTTCTAATTTATTCTTTGTTTATCTGAAGTACTGCTTCTGTATAGATTTCTGTAGATCAAATTATACTGTAGTCCTAATGTGTCCGTGATTAATTTGTTGTGAAGTCTGTCCCAAACTCTTAATTTAAGTTTTAGAAGTATGCTATTTATATTTATTGCACTTTTATGATCTGATAATCATTTTTGATAACTTCAGTGAATGTTTTCTACCTTTTCGAGAGACACCTGTTTGCGGAACTGGTTGATCCAGAAGTTGCTCAGTGTGCTTGCTACCtgtcaaatgtattaaaatatttTTGATTGTCTGATA

Function

NR:

description
B box and SPRY domain-containing protein-like

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036968090.1 False 2036 mRNA 0.47 6 19946567 19950623
XM_036968089.1 True 2229 mRNA 0.49 6 19946567 19950624

Neighbor

gene id symbol gene type direction distance location
traf2 LOC106563303 coding downstream 40694 19882762 ~ 19905873 (-)
LOC110509775 LOC106563308 coding downstream 105883 19837235 ~ 19840684 (-)
LOC110509773 LOC106563311 coding downstream 111298 19807260 ~ 19835269 (-)
LOC110509772 LOC106563313 coding downstream 153673 19780056 ~ 19792894 (-)
LOC100136307 LOC106563312 coding downstream 160675 19738585 ~ 19785892 (-)
LOC110509785 LOC106563298 coding upstream 72504 20023128 ~ 20025908 (-)
LOC110509787 LOC106563295 coding upstream 100171 20050795 ~ 20063783 (-)
LOC110509788 LOC106563294 coding upstream 137601 20088225 ~ 20093695 (-)
lman2la lman2l coding upstream 188332 20138956 ~ 20143762 (-)
LOC110509794 ddx54 coding upstream 811037 20761661 ~ 20772043 (-)
G2161972 NA non-coding downstream 1487 19944805 ~ 19945080 (-)
G2161970 NA non-coding downstream 4624 19941606 ~ 19941943 (-)
G2161969 NA non-coding downstream 6181 19940140 ~ 19940386 (-)
G2161908 NA non-coding downstream 63972 19882068 ~ 19882595 (-)
G2161904 NA non-coding downstream 64962 19879833 ~ 19881605 (-)
G2161975 NA non-coding upstream 1687 19952311 ~ 19952624 (-)
G2161978 NA non-coding upstream 5283 19955907 ~ 19956217 (-)
G2161992 NA non-coding upstream 23249 19973873 ~ 19974155 (-)
G2162004 NA non-coding upstream 33600 19984224 ~ 19984509 (-)
G2162013 NA non-coding upstream 38855 19989479 ~ 19989868 (-)
LOC110509757 LOC106563370 other downstream 669561 19275539 ~ 19277044 (-)
G2158111 akna other downstream 3299970 16643681 ~ 16646597 (-)
G2158088 LOC100136012 other downstream 3338561 16607625 ~ 16608006 (-)
G2157743 NA other downstream 3523146 16421677 ~ 16423421 (-)
G2157715 NA other downstream 3560522 16381190 ~ 16386045 (-)
G2162005 NA other upstream 33921 19984545 ~ 19984779 (-)
G2162127 NA other upstream 132521 20083145 ~ 20083618 (-)
G2162405 LOC106563289 other upstream 358565 20309189 ~ 20309802 (-)
G2162422 LOC106563345 other upstream 379124 20329748 ~ 20330138 (-)

Expression


Co-expression Network