Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110509780 |
| gene name | LOC106563302 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048593.1 |
| NCBI id | CM023247.2 |
| chromosome length | 47748341 |
| location | 19946567 ~ 19950624 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| B box and SPRY domain-containing protein-like |
| id | name | namespace |
|---|---|---|
| GO:0005622 | intracellular anatomical structure | cellular_component |
| GO:0008270 | zinc ion binding | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036968090.1 | False | 2036 | mRNA | 0.47 | 6 | 19946567 | 19950623 |
| XM_036968089.1 | True | 2229 | mRNA | 0.49 | 6 | 19946567 | 19950624 |
19,941,000
19,942,000
19,943,000
19,944,000
19,945,000
19,946,000
19,947,000
19,947,000
19,948,000
19,949,000
19,950,000
19,951,000
19,952,000
19,953,000
NC_048593.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| traf2 | LOC106563303 | coding | downstream | 40694 | 19882762 ~ 19905873 (-) |
| LOC110509775 | LOC106563308 | coding | downstream | 105883 | 19837235 ~ 19840684 (-) |
| LOC110509773 | LOC106563311 | coding | downstream | 111298 | 19807260 ~ 19835269 (-) |
| LOC110509772 | LOC106563313 | coding | downstream | 153673 | 19780056 ~ 19792894 (-) |
| LOC100136307 | LOC106563312 | coding | downstream | 160675 | 19738585 ~ 19785892 (-) |
| LOC110509785 | LOC106563298 | coding | upstream | 72504 | 20023128 ~ 20025908 (-) |
| LOC110509787 | LOC106563295 | coding | upstream | 100171 | 20050795 ~ 20063783 (-) |
| LOC110509788 | LOC106563294 | coding | upstream | 137601 | 20088225 ~ 20093695 (-) |
| lman2la | lman2l | coding | upstream | 188332 | 20138956 ~ 20143762 (-) |
| LOC110509794 | ddx54 | coding | upstream | 811037 | 20761661 ~ 20772043 (-) |
| G2161972 | NA | non-coding | downstream | 1487 | 19944805 ~ 19945080 (-) |
| G2161970 | NA | non-coding | downstream | 4624 | 19941606 ~ 19941943 (-) |
| G2161969 | NA | non-coding | downstream | 6181 | 19940140 ~ 19940386 (-) |
| G2161908 | NA | non-coding | downstream | 63972 | 19882068 ~ 19882595 (-) |
| G2161904 | NA | non-coding | downstream | 64962 | 19879833 ~ 19881605 (-) |
| G2161975 | NA | non-coding | upstream | 1687 | 19952311 ~ 19952624 (-) |
| G2161978 | NA | non-coding | upstream | 5283 | 19955907 ~ 19956217 (-) |
| G2161992 | NA | non-coding | upstream | 23249 | 19973873 ~ 19974155 (-) |
| G2162004 | NA | non-coding | upstream | 33600 | 19984224 ~ 19984509 (-) |
| G2162013 | NA | non-coding | upstream | 38855 | 19989479 ~ 19989868 (-) |
| LOC110509757 | LOC106563370 | other | downstream | 669561 | 19275539 ~ 19277044 (-) |
| G2158111 | akna | other | downstream | 3299970 | 16643681 ~ 16646597 (-) |
| G2158088 | LOC100136012 | other | downstream | 3338561 | 16607625 ~ 16608006 (-) |
| G2157743 | NA | other | downstream | 3523146 | 16421677 ~ 16423421 (-) |
| G2157715 | NA | other | downstream | 3560522 | 16381190 ~ 16386045 (-) |
| G2162005 | NA | other | upstream | 33921 | 19984545 ~ 19984779 (-) |
| G2162127 | NA | other | upstream | 132521 | 20083145 ~ 20083618 (-) |
| G2162405 | LOC106563289 | other | upstream | 358565 | 20309189 ~ 20309802 (-) |
| G2162422 | LOC106563345 | other | upstream | 379124 | 20329748 ~ 20330138 (-) |
