LOC110509781 (LOC106563300)


Basic Information

Item Value
gene id LOC110509781
gene name LOC106563300
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 19969857 ~ 19977843 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590880.2
atatatatatatataagtgtcCCTCTTTGTTGGGAAGGGGTCATCAACTTTGGGCTTGATCAGGCATTGTTACTTTCCTGTGTTAAACATCCCTGAATGAATCTGCGATTGGTCAGTTGCCCTTCCAGATGCCCACACAAACAGTCCCTGTCACTAACGCTAACGTTCAAGGGATATCCTGGGAAAAACTTGGAAAACCCAGGTTGGCCGTTGGACAGGCTATGTCAGTTCGGGTCTTGGGATTGTATGAAATGGCCCGAATTCAATTCCATTGTTTTCTACACGTCAGTCATCAGAGATATTTGTTCTATGCCCAATGATCACTCCCTAGGAGTGATGGATGAACACCTGCTCAAAGTTTGTCTTCCTGTTGTGTCTTAGGTGGCAATGAGGAATCCTGACACTCACAGATAATGCATGTAACAAGCAGACCGACATAATACATGCAGCACACGTTGATAGTTTATGTGGACTGGTTCATAACACTGTGCACTGAGTTGTTTTAACACACCCAACCGTTACCTTTGTCATAGAGATGGGGGGGAGTTTAGAGGTAGGGAGAGTTGACTGTTGGGTGTAAAAatgctacttttttttttttttttttttttacagaatgaAAGCATTAATCACATAAGAGTAtaaagctacagtatatgaacagGAGTACAGTTGGGGATAACTAGCTGTCTCTTTTCACTGTAAAATGATCAAATGAAATAAAATGACAAAATGTTTCCCATGGATGTATGACTGGTGGGAGTTTAAGGCGCCCTCATGGTATGTCACCACAAAACTGTTTGTTCATTTAGATATGGAGGAAATGGTCTACGTTCAGTTGGCCTGATACAATAACAGTGTGACACAGAAGCAATTTGAAGGTGTCGCATATGAGGGTTAGGCTCAGGAAATAATAGCCGGGAATTTATTGTGGAGCTTGTAAAATTAGATCTTTACTTCCATTGGCAGGTGTGTGAATAAACTAGAAGAAAAAGTAAAAGGGACAGCAGACATACAAATAAAGGAGCCTGGACAGTTTAATGTGTCTAAGTAAAGTGGAATGAATAACCTTTACTCAACGTCACCATGGTGATCAGTGGGCTGGTCTGGTACTGTGCAGCTCTCTGGGACAAGAGATAGGAGCATAAGGAGCCTGTGACGtttatcccctcccctctccttcacaTTCCCAAAGCGAACCCAGGCAAAGGAGTGACAAACCCTCACTATATTGAATTAGAGCCTATGTGAAATAGCGGCTTAAGGAAAAATTGCTTGAGAAACACTTACGACTGCTACTAGAAAATGTCACAAAAGTCTATCTTTAGTTGAGTTACAATTGGCCCAGAGGCTCAAATAGTGTTACCGGAGTGCTGAAGGATGGCTTGCTCTGCTGTGCCCAGTGGACTATGATTTACTTACTGGACAGCTTATATGGATGTAGAAAGTCTGTACCCCGAACCACAACTTTTTGAAAACTCACTTTGCACCAACCCGGCACTGAAATCCTGAAATAAAACCACTCCTGACAATTGATGGCTTGTCCTTGCCAATGTCACTCGGAGAGATCACTGTCCATGCTCCTGTGTCCGGAGCCCACTCATGTGAAGGCTGCGTTGGAAGTTCTGAGTAGGTCTGCTCAGGAGAGCAGAAAGCAGCTGGTGGTGGAGATACTGAAGGATCCTAAGAGAGAGCGCTACATCAGGACACTAGAATATTTACTCAGCTCCACAGACTCATGGCTTTGCAGTACTGCAGCCTATCTTCTTGGAgtcctggtggagagagaggaggttgtgCAGCAGCTCAAGGCCAAGGCTCCAAAGAGCAGCAACAGCCTTGTTGGGACTCTAGGGAAGCTCCTAACCAGACATGATCCAGACATTGTGATGAATGCTGCTGGTGCTTTAGCCTCTTTGgttgAGAGCTCGGCTGGACGTGGGTGGCTACAGAGAGACCAGGCTGTGTTTGGTCAGCTCTTGACCAGCCTGTTGACCCTGCTGGACCACGGACCGGAGAGCATGGTGAACTCTGCAGCCCTGATCCTGGCCAGGCTGTCCCTGTGTGATGTGGCCTGCCAAGGCCTGTTACGccacccctcagcccccagcACCTTGGGCTGCCTGGTACAATGCCTGGCACACAGCCATACAGACACGGCTATGAATGCAGCCTTTGCTTTGGGTCGTCTGTGTGGAAGTGAAAGAGGCAGGAGTCTCATTCTGACATTTGCGCCAGAGTACCAACTGGTTCACAGTCTGCAAGCCCTCATGAGTGAGGTGGCTGGGCCAGAGGCAGGACAGACAGCCTGTTTTGCATTGAGTTGCCTAGTAACAGAAGAAGATGGACACGCTCTGGTGCTGGGTAGCCCATCCCTTCCCAGCCTTCTTGATGCTCTTCTCTACCGCTTACAAACAGAAGACCAGGACAGTGCCTGGTTTGCTGCCATGGCAGTGAAAGTGTTCGTGTCACGACCGGCTGGAGTGTTACACGTGCGAGAGCACAGGTCTCTGAGGGAGCGACTGAAGtctctctccagctctccctccATTGGCAAGGATCTCAGGGAGGAAGTGACCTCATGTCTTAGGAAGCTGGAGCCACTTGTTAAGCCATTGCCCCCGACAACTAGGCGCCTCCCATCTGGGGCCTGCACTGTGTCATGGGAGAAGTGTTTCCCTGAGAGTGGCCTAGAGGTCACTTACAGCCTTCTGGACAGAGAGATAGTTATGTATCGTGGAACCCAATGTCACGTGACTTTACCGGTATCAGTCCTCAAACCTGGACATGAGTTCTCACTCCGACTGATCCACTCTTCCGCTGATGGAGACACCAGCCCCTGCAGCGAGCCTGTGCTATTGGTCATAGAATCAGAGGAGACGGGGGCAAGGCCTGGTCCTCCACAGAAGCTGCGCGTGATTGGATGCACAGCCTCTCATGTGCGACTGAGTTGGGTTGCGCCGGCGGGTGAGCTGAAGCCCCAGGTGTATCAGCTGTATCGTGGTGAAACACTACTAGATACCACAACAGAGCTGAGGGCTGTAGTGGGTGGTCTGTCCCCGGGAACCCTTTTCCAGCTGGGTGTGTGCGCAGTGGGGCCAGGGGAAGAGGTTGGCCCCTGTGCGGAGGTGGAGGTCCGTACAGCCAAGGACCAGGACCACGCACCCAGCGGCCTGACCATGGTGGTGCTGGGCAGGCATGAGCTGCAGATCATGTGGGGGGCTCCCCTGGTGCCCCTGGGTCGCCTGTTCAACTATGAGCTGAGGCTGAATGATTGCGTGGCTTACTTGGGCACGGCGCGTGCTCACACTGCCCGCCGTCTGGCCGCCAACACGGCCTACACCTGTACTGTAACGGCCATCACCACCAGAGGGCGCTCTCAGAGCCGGTCCGTCACTAAGAGGACCGCTCGCGACGAGTACCCGTACACACAGAGGTGTCTGTACTCCTCCAGCCGTCAGCCTCCTCCTAAGACTCCTTCATCACCCCCATCAGTCACAGAGGCAACAGAGGTCAGACGAAAGGTCACAGAGATCGTGGAAAAGGCCAAGAAACCCCACTCTGCACACGACCATCTGACCAAGGTCCATCTGTCCAGCAGGCAATACAGAGGGACTGATCACGACAGCGAGAGACACAGGCAACCTTTGGTCTCCACTTCATCTGCTGGCTGTGAAAGCAGCAAAATGGAATCATCTGAGATGATGACCATGGGGCTGGTGAATGGATATGATGCAAAGGCCTTATGGAGGAGAGCCAAAGAGAGGGCAGGAGTATCTGTCTGCCCTGCTGGGCTTCCAGTCCGACCCCTGCTCCATCTCCAGGCTAAGACTGAGGAAAACCTGCTTGAGAGGCAGTCCCACCGTGGCCTGGACCAGCATTTAGACCCTTCATGCCTCAGGGCCCAAATAAGCCCATGGATGCTTCTCCAGTGGAGTGCTCTCAGAAGACGACCTAGAGACAGAGGAAAACTCCCCTGTATCCCCCATCATTTAGATGCAGTGAAGTTAGTCCATCCCATTCCTCCCTCCTACCCACAACTGGACTGGACAGGAAACTATAAAGACAAGCTGCTGAGAGACCGGACAAGGCTTTTGACAGGACCAAGAGTGCAGAGCGAAATCCGAGGAAGACATCCCCTAACAACAAACTGGACCAAGCTTAGCTGATAATGATCCGTAGAGGATCAAAATCTAAAACAAGCAGAGAATGGTGCTGCTTCAGAGAATGGTGCTGCTTCAGAGAATGGTGCTGCTTCAGAGAATGGTGCTGCTTCAGAGAATGGGTTTTGGGGGCTCGTCTCAATACCAGTGATTTTCATAAAGACTGTGTGAATGGAAAAATGTAATAATCAACTGTTTCAGGCTTGTTATTCAGTATTAATGCCCggaattcaattttttttaaatgttttgtttattttgatGCCGATGTTTGTTTCAAATCAATGATGTTAAATGAGTGAATCTCAAATCATAGCTCCTCATTTTTGCATCAATCATATGGTTAAAGAAGTATTACTCAGCAGAAAATAAACTATCCCACCAAACAAAATATTTTTCTGTCCCCAAAATAGAGTACAGTAATGTATCtatgaaatgtattttttctgATGTTATTGTCAGATTATCCAGCCTCGTCATTATTTGACTAGTGTAGTTGTACCTGTGTTGTGAACAGAGAAATTTTTAGAGGACATATTCAACATCAAGCAATCATCTCAAATTGGGTTGCACATTTTTGGGGAATAtgcagaggtggaaactttccgtgggaattaacgggaatgaACTGAAATATATGGAAatgaatattaataccatttaaatgtagatgtttttttgcattggatttatttaccatatcatatggagacagaaacatgaacattttaccttatcagtagacataattgcaaatgattaaat
>XM_021590881.2
atatatatatatataagtgtcCCTCTTTGTTGGGAAGGGGTCATCAACTTTGGGCTTGATCAGGCATTGTTACTTTCCTGTGTTAAACATCCCTGAATGAATCTGCGATTGGTCAGTTGCCCTTCCAGATGCCCACACAAACAGTCCCTGTCACTAACGCTAACGTTCAAGGGATATCCTGGGAAAAACTTGGAAAACCCAGGTTGGCCGTTGGACAGGCTATGTCAGTTCGGGTCTTGGGATTGTATGAAATGGCCCGAATTCAATTCCATTGTTTTCTACACGTCAGTCATCAGAGATATTTGTTCTATGCCCAATGATCACTCCCTAGGAGTGATGGATGAACACCTGCTCAAAGTTTGTCTTCCTGTTGTGTCTTAGGTGGCAATGAGGAATCCTGACACTCACAGATAATGCATGTAACAAGCAGACCGACATAATACATGCAGCACACGTTGATAGTTTATGTGGACTGGTTCATAACACTGTGCACTGAGTTGTTTTAACACACCCAACCGTTACCTTTGTCATAGAGATGGGGGGGAGTTTAGAGGTAGGGAGAGTTGACTGTTGGGTGTAAAAatgctacttttttttttttttttttttttacagaatgaAAGCATTAATCACATAAGAGTAtaaagctacagtatatgaacagGAGTACAGTTGGGGATAACTAGCTGTCTCTTTTCACTGTAAAATGATCAAATGAAATAAAATGACAAAATGTTTCCCATGGATGTATGACTGGTGGGAGTTTAAGGCGCCCTCATGGTATGTCACCACAAAACTGTTTGTTCATTTAGATATGGAGGAAATGGTCTACGTTCAGTTGGCCTGATACAATAACAGTGTGACACAGAAGCAATTTGAAGGTGTCGCATATGAGGGTTAGGCTCAGGAAATAATAGCCGGGAATTTATTGTGGAGCTTGTAAAATTAGATCTTTACTTCCATTGGCAGGTGTGTGAATAAACTAGAAGAAAAAGTAAAAGGGACAGCAGACATACAAATAAAGGAGCCTGGACAGTTTAATGTGTCTAAGTAAAGTGGAATGAATAACCTTTACTCAACGTCACCATGGTGATCAGTGGGCTGGTCTGGTACTGTGCAGCTCTCTGGGACAAGAGATAGGAGCATAAGGAGCCTGTGACGtttatcccctcccctctccttcacaTTCCCAAAGCGAACCCAGGCAAAGGAGTGACAAACCCTCACTATATTGAATTAGAGCCTATGTGAAATAGCGGCTTAAGGAAAAATTGCTTGAGAAACACTTACGACTGCTACTAGAAAATGTCACAAAAGTCTATCTTTAGTTGAGTTACAATTGGCCCAGAGGCTCAAATAGTGTTACCGGAGTGCTGAAGGATGGCTTGCTCTGCTGTGCCCAGTGGACTATGATTTACTTACTGGACAGCTTATATGGATGTAGAAAGTCTGTACCCCGAACCACAACTTTTTGAAAACTCACTTTGCACCAACCCGGCACTGAAATCCTGAAATAAAACCACTCCTGACAATTGATGGCTTGTCCTTGCCAATGTCACTCGGAGAGATCACTGTCCATGCTCCTGTGTCCGGAGCCCACTCATGTGAAGGCTGCGTTGGAAGTTCTGAGTAGGTCTGCTCAGGAGAGCAGAAAGCAGCTGGTGGTGGAGATACTGAAGGATCCTAAGAGAGAGCGCTACATCAGGACACTAGAATATTTACTCAGCTCCACAGACTCATGGCTTTGCAGTACTGCAGCCTATCTTCTTGGAgtcctggtggagagagaggaggttgtgCAGCAGCTCAAGGCCAAGGCTCCAAAGAGCAGCAACAGCCTTGTTGGGACTCTAGGGAAGCTCCTAACCAGACATGATCCAGACATTGTGATGAATGCTGCTGGTGCTTTAGCCTCTTTGgttgAGAGCTCGGCTGGACGTGGGTGGCTACAGAGAGACCAGGCTGTGTTTGGTCAGCTCTTGACCAGCCTGTTGACCCTGCTGGACCACGGACCGGAGAGCATGGTGAACTCTGCAGCCCTGATCCTGGCCAGGCTGTCCCTGTGTGATGTGGCCTGCCAAGGCCTGTTACGccacccctcagcccccagcACCTTGGGCTGCCTGGTACAATGCCTGGCACACAGCCATACAGACACGGCTATGAATGCAGCCTTTGCTTTGGGTCGTCTGTGTGGAAGTGAAAGAGGCAGGAGTCTCATTCTGACATTTGCGCCAGAGTACCAACTGGTTCACAGTCTGCAAGCCCTCATGAGTGAGGTGGCTGGGCCAGAGGCAGGACAGACAGCCTGTTTTGCATTGAGTTGCCTAGTAACAGAAGAAGATGGACACGCTCTGGTGCTGGGTAGCCCATCCCTTCCCAGCCTTCTTGATGCTCTTCTCTACCGCTTACAAACAGAAGACCAGGACAGTGCCTGGTTTGCTGCCATGGCAGTGAAAGTGTTCGTGTCACGACCGGCTGGAGTGTTACACGTGCGAGAGCACAGGTCTCTGAGGGAGCGACTGAAGtctctctccagctctccctccATTGGCAAGGATCTCAGGGAGGAAGTGACCTCATGTCTTAGGAAGCTGGAGCCACTTGTTAAGCCATTGCCCCCGACAACTAGGCGCCTCCCATCTGGGGCCTGCACTGTGTCATGGGAGAAGTGTTTCCCTGAGAGTGGCCTAGAGGTCACTTACAGCCTTCTGGACAGAGAGATAGTTATGTATCGTGGAACCCAATGTCACGTGACTTTACCGGTATCAGTCCTCAAACCTGGACATGAGTTCTCACTCCGACTGATCCACTCTTCCGCTGATGGAGACACCAGCCCCTGCAGCGAGCCTGTGCTATTGGTCATAGAATCAGAGGAGACGGGGGCAAGGCCTGGTCCTCCACAGAAGCTGCGCGTGATTGGATGCACAGCCTCTCATGTGCGACTGAGTTGGGTTGCGCCGGCGGGTGAGCTGAAGCCCCAGGTGTATCAGCTGTATCGTGGTGAAACACTACTAGATACCACAACAGAGCTGAGGGCTGTAGTGGGTGGTCTGTCCCCGGGAACCCTTTTCCAGCTGGGTGTGTGCGCAGTGGGGCCAGGGGAAGAGGTTGGCCCCTGTGCGGAGGTGGAGGTCCGTACAGCCAAGGACCAGGACCACGCACCCAGCGGCCTGACCATGGTGGTGCTGGGCAGGCATGAGCTGCAGATCATGTGGGGGGCTCCCCTGGTGCCCCTGGGTCGCCTGTTCAACTATGAGCTGAGGCTGAATGATTGCGTGGCTTACTTGGGCACGGCGCGTGCTCACACTGCCCGCCGTCTGGCCGCCAACACGGCCTACACCTGTACTGTAACGGCCATCACCACCAGAGGGCGCTCTCAGAGCCGGTCCGTCACTAAGAGGACCGCTCGCGACGAGTACCCGTACACACAGAGGTGTCTGTACTCCTCCAGCCGTCAGCCTCCTCCTAAGACTCCTTCATCACCCCCATCAGTCACAGAGGCAACAGAGGTCAGACGAAAGGTCACAGAGATCGTGGAAAAGGCCAAGAAACCCCACTCTGCACACGACCATCTGACCAAGGTCCATCTGTCCAGCAGGCAATACAGAGGGACTGATCACGACAGCGAGAGACACAGGCAACCTTTGGTCTCCACTTCATCTGCTGGCTGTGAAAGCAGCAAAATGGAATCATCTGAGATGATGACCATGGGGCTGGTGAATGGATATGATGCAAAGGCCTTATGGAGGAGAGCCAAAGAGAGGGCAGGAGTATCTGTCTGCCCTGCTGGGCTTCCAGTCCGACCCCTGCTCCATCTCCAGGCTAAGACTGAGGAAAACCTGCTTGAGAGGCAGTCCCACCGTGGCCTGGACCAGCATTTAGACCCTTCATGCCTCAGGGCCCAAATAAGCCCATATGCAGTGAAGTTAGTCCATCCCATTCCTCCCTCCTACCCACAACTGGACTGGACAGGAAACTATAAAGACAAGCTGCTGAGAGACCGGACAAGGCTTTTGACAGGACCAAGAGTGCAGAGCGAAATCCGAGGAAGACATCCCCTAACAACAAACTGGACCAAGCTTAGCTGATAATGATCCGTAGAGGATCAAAATCTAAAACAAGCAGAGAATGGTGCTGCTTCAGAGAATGGTGCTGCTTCAGAGAATGGTGCTGCTTCAGAGAATGGTGCTGCTTCAGAGAATGGGTTTTGGGGGCTCGTCTCAATACCAGTGATTTTCATAAAGACTGTGTGAATGGAAAAATGTAATAATCAACTGTTTCAGGCTTGTTATTCAGTATTAATGCCCggaattcaattttttttaaatgttttgtttattttgatGCCGATGTTTGTTTCAAATCAATGATGTTAAATGAGTGAATCTCAAATCATAGCTCCTCATTTTTGCATCAATCATATGGTTAAAGAAGTATTACTCAGCAGAAAATAAACTATCCCACCAAACAAAATATTTTTCTGTCCCCAAAATAGAGTACAGTAATGTATCtatgaaatgtattttttctgATGTTATTGTCAGATTATCCAGCCTCGTCATTATTTGACTAGTGTAGTTGTACCTGTGTTGTGAACAGAGAAATTTTTAGAGGACATATTCAACATCAAGCAATCATCTCAAATTGGGTTGCACATTTTTGGGGAATAtgcagaggtggaaactttccgtgggaattaacgggaatgaACTGAAATATATGGAAatgaatattaataccatttaaatgtagatgtttttttgcattggatttatttaccatatcatatggagacagaaacatgaacattttaccttatcagtagacataattgcaaatgattaaat

Function

NR:

description
uncharacterized protein LOC110509781 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590880.2 False 4928 mRNA 0.48 16 19969857 19977843
XM_021590881.2 True 4850 mRNA 0.48 15 19969857 19977843

Neighbor

gene id symbol gene type direction distance location
zmynd19 LOC106563301 coding upstream 65 19956905 ~ 19969792 (+)
LOC110509779 coq4 coding upstream 41298 19921602 ~ 19928559 (+)
LOC118936353 NA coding upstream 61379 19904784 ~ 19908478 (+)
fbxw5 LOC106563306 coding upstream 96511 19860393 ~ 19873346 (+)
LOC110509777 NA coding upstream 120707 19847023 ~ 19849150 (+)
LOC110509783 LOC106563299 coding downstream 17521 19995364 ~ 20011389 (+)
LOC110509784 LOC106563296 coding downstream 48070 20025913 ~ 20042438 (+)
wbp1 LOC106563291 coding downstream 142172 20120015 ~ 20131381 (+)
LOC110509341 LOC106566934 coding downstream 195346 20173189 ~ 20181289 (+)
LOC110509342 LOC106563289 coding downstream 238869 20216712 ~ 20323036 (+)
G2161736 NA non-coding upstream 24574 19945072 ~ 19945283 (+)
G2161734 NA non-coding upstream 26430 19943220 ~ 19943427 (+)
G2161731 NA non-coding upstream 28500 19941009 ~ 19941357 (+)
G2161720 NA non-coding upstream 34528 19934995 ~ 19935329 (+)
G2161719 NA non-coding upstream 35087 19934441 ~ 19934770 (+)
G2162020 NA non-coding downstream 34088 20011931 ~ 20012631 (+)
G2162034 NA non-coding downstream 42882 20020725 ~ 20020930 (+)
G2162035 NA non-coding downstream 43691 20021534 ~ 20021738 (+)
G2162065 NA non-coding downstream 103752 20081595 ~ 20082036 (+)
G2162067 LOC106563294 non-coding downstream 108233 20086076 ~ 20091352 (+)
G2161678 NA other upstream 172083 19795260 ~ 19797774 (+)
G2161635 LOC106563312 other upstream 217114 19741814 ~ 19752743 (+)
LOC110509766 LOC106566689 other upstream 353346 19609602 ~ 19616511 (+)
LOC110509753 LOC106563373 other upstream 832289 19136428 ~ 19138160 (+)
LOC118945267 NA other upstream 901073 19066137 ~ 19068784 (+)
LOC110509811 LOC106563272 other downstream 1220075 21160126 ~ 21389662 (+)
G2163804 LOC106613263 other downstream 1622575 21600418 ~ 21601052 (+)
G2165628 LOC106563266 other downstream 2859228 22837071 ~ 22841481 (+)
G2165973 LOC106563265 other downstream 3147937 23125780 ~ 23134290 (+)
LOC110509345 LOC106563260 other downstream 3537779 23468400 ~ 23534217 (+)

Expression


Co-expression Network