LOC110509785 (LOC106563298)


Basic Information

Item Value
gene id LOC110509785
gene name LOC106563298
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 20023128 ~ 20025908 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590891.2
CGGGATGGAACGTCACTTTCAAGCGACGATTACTGCTTTGTTCCGGACACGGCAACAACCTCGGTCACACCCACATCGTAAGATAGTTTAGGTTTTAATATTGTATTTGTATGCTATTTATTTGCAGATTATGGCAAAGTCAAAAGACTTAAAAGTGTTTTTGGAATCGTCTCTGAACGAGATTTTTAAAGCCACAGTAAGTGACATATTGGAGTCAGTGGACCAAACGTTGTCTGAGTACAAGGGCAAAATACAAAGAATTGAAAGTGAGAATGAGGATCTTAAACGAAGGCTGCACGAACAAGACAATACGGATTCGATCGTAAAGGACCCTGAAAGTAACCAGGACGTCGTTCACCTCCCAGACTTATCAAGGAAGACATGTTCCAGCCGTTCATCTGTCAGCCAATCCCATAAGCCAATCAAAACacagggtgatgagaggaggagCTCCAGGAGACAGCACAAGGGCAAGATACCTCAGAGCAGAGGGTCTGTCTCCATTATGGATCCAGCAGCTCAGCAGGAACCAGAATGCCTCAAAAACATCCCAGACACTGCGGTTTCCACCCTAATTTTCAAAAACATAAAGACAGAACCTGATATGGAGGATGACTATGCTATAGACCTCTCAAAACCACCATCTCCTCTCAACCTGGCATCTAAGCAAATTAAGATGGAGAGTGCTGAGTTGAGCTATATCATTCCTGAAGAGTATGATGAACATTTTCAGTCACCACTGGACACAGATGTGGACTCTAGAGACAGCGACAGTGATGTCAAAGTCACCATAGTGTCTGACATTCACATGGAGATGGGAGACGATGAGGGTGGCCATTTTGTTGAATCGGAGGGAAGGCTGTGTCACAATGATACTGGTGAGTCTGAGCCAGAAGAAGATCCTTTCTTGGCATACTACCCTGACACGGGAACTGACCCTGCTAGGACGACAGGGGAGGACATTTTACCAACTCTGAACTCTCACGCTACAGAGCCCTCTAAAAACACACAAGGCTTCTACAACTGCACCCAGTGTGAGAAGACATTTAGTCGAGTGAGCTCCCTCAACATTCACATGAGGAATCATAGTGGCGAGAAGGCCCACTGCTGCAACTACTGTGGCAAACGCTTTGGCCGGGCAGACCTGCTCAAGTCCCACAAGCgcactcacacaggagagagaccgtTCAGCTGCAACCTCTGTGGGAAGAACTACAGTCACCCGGGCCAGCTCAGAATACACAAGCGTGTTCATACGGGAGAGAGACCGTACTGCTGCCCACATTGTGGGAAGCGCTTCAGTGAACACAACCAGCTTAAAGTCCACTTAcgaactcacacaggagagaggccaTACAGTTGCACTGTCTGCGCCAAAACATTTAGCAACGCAGGTAACCTGAGAATACATCAGAGAATACACACGGGGGAAAAGCCTTACTGCTGTGTACAGTGTGGCAAGAGGTTCAATGGTATGGGGGACCTCAAAACACATTACAGGATTCATACAGGGGAGAGGCCGTACCACTGTGACCTGTGTGAGAAGACCTTCAGCCAGGCAGGCCACCTCACCATACACAAGCGGATGCACACGGGAGAGAAACCATACACGTGCTCAGAGTGTGGTAAAAGCTTCAGCGTGGCGAGCAGCCTCAAGCTGCACCTGAGGACTCATACAGGGGAGAAACTCTTCAGCTGCTCTtactgtgggaagagcttcagtaGGTCTGGCCATCTGAAGAGACACGAACAGGTCCACACCAAGGAGAAGGTCTACACCTGTGACCAGTGTGGGAAGACCTACACCGACCAGTCATCCCTCAAAAAGCACCAGAAGACTCatggagatgaggagatgaggacTGAGGATATTGAGGGCAGTACCAGTGGGACTGATGTTCCCCATAACCTGGAAATAAAGATTGAGGACTAAGACTGTCatattactgtatgtgttacATTGCAATATATATGGATATTTAATGTTGATGTATCAGTACAGTGTTGGAGAAAGACTGTATGCTGAATTTCATGAGAACTCAAGTTTAGATTTGTCCCAAGTAGTAGGACAGCAAACTGCTTTTAGTGGATGTAGCCCAAGAGCTAGTCTTTGCCAGTATTAAACTATGGTAATAATTGTAATTTGTGGTAGTCTTTCTATGTATATAGTGGTAATGTTGTTTCctaacactgtacatagctttTAAGTCATATTCTCTAAGAAAATTTAGATTTTCTTAAAAAGAATGTCATGCATTTTAGTGTAAATAATGAAATTCACCCAAATTGGTTGCAATGGCCTTTACCTAGAGACAAGCTAGATCATTTAATCTATGAACATGCCGTTCATTTTCACAATTAATggttttaaacaaatcaacacgTTACACTAGAATATTGCATTCTTTTGGTAAGAATGATGCCAAACTTTGAAAACTATTTAttattcaaagtgtaattaaaggAATAATCCACCCAAAA

Function

NR:

description
zinc finger protein 260-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590891.2 True 2481 mRNA 0.45 2 20023128 20025908

Neighbor

gene id symbol gene type direction distance location
LOC110509780 LOC106563302 coding downstream 72504 19946567 ~ 19950624 (-)
traf2 LOC106563303 coding downstream 117255 19882762 ~ 19905873 (-)
LOC110509775 LOC106563308 coding downstream 182444 19837235 ~ 19840684 (-)
LOC110509773 LOC106563311 coding downstream 187859 19807260 ~ 19835269 (-)
LOC110509772 LOC106563313 coding downstream 230234 19780056 ~ 19792894 (-)
LOC110509787 LOC106563295 coding upstream 24887 20050795 ~ 20063783 (-)
LOC110509788 LOC106563294 coding upstream 62317 20088225 ~ 20093695 (-)
lman2la lman2l coding upstream 113048 20138956 ~ 20143762 (-)
LOC110509794 ddx54 coding upstream 735753 20761661 ~ 20772043 (-)
LOC110509795 LOC106563284 coding upstream 785828 20811736 ~ 20869832 (-)
G2162097 NA non-coding downstream 94 20022702 ~ 20023034 (-)
G2162095 NA non-coding downstream 1187 20021638 ~ 20021941 (-)
G2162091 NA non-coding downstream 7405 20015494 ~ 20015723 (-)
G2162087 NA non-coding downstream 11746 20008474 ~ 20011382 (-)
G2162077 NA non-coding downstream 28877 19994008 ~ 19994251 (-)
G2162098 NA non-coding upstream 1093 20027001 ~ 20027292 (-)
G2162100 LOC106563296 non-coding upstream 3185 20029093 ~ 20030960 (-)
G2162126 NA non-coding upstream 56854 20082762 ~ 20083004 (-)
G2162136 NA non-coding upstream 73637 20099545 ~ 20099749 (-)
G2162137 NA non-coding upstream 74235 20100143 ~ 20100359 (-)
G2162005 NA other downstream 38349 19984545 ~ 19984779 (-)
LOC110509757 LOC106563370 other downstream 746122 19275539 ~ 19277044 (-)
G2158111 akna other downstream 3376531 16643681 ~ 16646597 (-)
G2158088 LOC100136012 other downstream 3415122 16607625 ~ 16608006 (-)
G2157743 NA other downstream 3599707 16421677 ~ 16423421 (-)
G2162127 NA other upstream 57237 20083145 ~ 20083618 (-)
G2162405 LOC106563289 other upstream 283281 20309189 ~ 20309802 (-)
G2162422 LOC106563345 other upstream 303840 20329748 ~ 20330138 (-)
surf4 LOC106563281 other upstream 944424 20970332 ~ 20978032 (-)

Expression


Co-expression Network