LOC110509788 (LOC106563294)


Basic Information

Item Value
gene id LOC110509788
gene name LOC106563294
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 20088225 ~ 20093695 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590893.2
ATGTGTGATGAACTGCAGGGTTTGCTGTCGATTCTGCGAAGACTGAAGCACTCTCCGGACCAGGAGGTGCGGTTACTGTTGCTAGGGCTGGACAACGCTGGCAAGACCACCCTGCTTAAACAGCTGGCCTCAGAGGATGTCAGCCACATCACCCCTACTCAGGGATTCAACATAAAGAGCATGCAGTCCCAGGGATTTAAGCTAAATGTTTGGGACATTGGAGGCCAGCGCAAGATCCGCCCGTACTGGAGGAACTACTTTGAGAACACAGACGTACTGATCTATGTGATTGACAGTTCAGACAGGAAACGCTTTGAAGAGACAGGTCAGgagcTAGCTGAGTTGATGGAAGAAGAGAAGTTGAGCATGGTGCCACTGTTGATATTTGCCAACAAGCAGGACCTGATGACTGCGGCTCCTGCATCAGAGCTAGCTGAGGGTCTCAACCTGCACACCATCAGAGACCGGGTATGGCAGATCCAGGCCTGCTCTGCAATTACCGCAGAGGGAGTACAGGATGGCATGACGTGGGTGTGCAAGAACATAGCAGTTCGTAAGAAGTGACGCCAGGGGTATACTTATTCCCAAAGACTCAAACGAAGGGTAGGAGGTGAAAGGTGGAGTGGTGTTTATTATCAAAGCTTTTGACTTGCTGTCATAATATGTTTTAAAAGTATTGTGATATTTTTTGGACTAGATCCTGAGCCAGTTGCAATAGAGTAAATACTTTAAAGAGAAAGTTTCTGTAATGTTGACATTACCAGCATTTTATTAATGCTTCTCcagttgtatatactgtatatacgtTATTATTTAAACATTTCAATTATTCAGATATTACTCCACTGTCATTTCTGTGTGCTTACTTTTGCCACCTTTTTGTAATAGTCAGGAGGCTTATTGTGAAGATGTCTACATTATGAAAGTAGTTTTTTAAGAATGAACAGCTGAATAGACacgacccactgggcacagacatcagttctaacgtctagttttgatttacatttggttgagttgtcaactaacctgaattcaacgtgaaataaacaaaaacttTCATCGTGTCATTGGATTtcggttaaaagttgggtgaaaaaaaaacacaacatgcccttatgttgatgacatttagttttccatgttgattccaTGTTATCACATAGATTATTttgggttgaaatgatgtggaaacaatgttgattcaaccagtttttgcccagtgggtactTTGTTTGCTTGTATGTGATTGAAACTCTGTCCTTAGTACCAGTGGGGCAGGGAAATATCCTGCTCTGTATCAGTAACCAGGTTTCTATCCAACCATTTCATGCCAATTTAATTACCTAAAGAATtaacaaataaaatgtgtttGTTCAAAATG
>XM_021590894.2
ACGGCTACCATAGCTACGGGGAGCTTTTCAGCTGTTCAGAATGAATACAGTCAAatgctactagctagctagctaatccaCTCACTGAGCCCGAACAGGAGCCACTAGCTGAGCAAACCATGGGTTTGCTGTCGATTCTGCGAAGACTGAAGCACTCTCCGGACCAGGAGGTGCGGTTACTGTTGCTAGGGCTGGACAACGCTGGCAAGACCACCCTGCTTAAACAGCTGGCCTCAGAGGATGTCAGCCACATCACCCCTACTCAGGGATTCAACATAAAGAGCATGCAGTCCCAGGGATTTAAGCTAAATGTTTGGGACATTGGAGGCCAGCGCAAGATCCGCCCGTACTGGAGGAACTACTTTGAGAACACAGACGTACTGATCTATGTGATTGACAGTTCAGACAGGAAACGCTTTGAAGAGACAGGTCAGgagcTAGCTGAGTTGATGGAAGAAGAGAAGTTGAGCATGGTGCCACTGTTGATATTTGCCAACAAGCAGGACCTGATGACTGCGGCTCCTGCATCAGAGCTAGCTGAGGGTCTCAACCTGCACACCATCAGAGACCGGGTATGGCAGATCCAGGCCTGCTCTGCAATTACCGCAGAGGGAGTACAGGATGGCATGACGTGGGTGTGCAAGAACATAGCAGTTCGTAAGAAGTGACGCCAGGGGTATACTTATTCCCAAAGACTCAAACGAAGGGTAGGAGGTGAAAGGTGGAGTGGTGTTTATTATCAAAGCTTTTGACTTGCTGTCATAATATGTTTTAAAAGTATTGTGATATTTTTTGGACTAGATCCTGAGCCAGTTGCAATAGAGTAAATACTTTAAAGAGAAAGTTTCTGTAATGTTGACATTACCAGCATTTTATTAATGCTTCTCcagttgtatatactgtatatacgtTATTATTTAAACATTTCAATTATTCAGATATTACTCCACTGTCATTTCTGTGTGCTTACTTTTGCCACCTTTTTGTAATAGTCAGGAGGCTTATTGTGAAGATGTCTACATTATGAAAGTAGTTTTTTAAGAATGAACAGCTGAATAGACacgacccactgggcacagacatcagttctaacgtctagttttgatttacatttggttgagttgtcaactaacctgaattcaacgtgaaataaacaaaaacttTCATCGTGTCATTGGATTtcggttaaaagttgggtgaaaaaaaaacacaacatgcccttatgttgatgacatttagttttccatgttgattccaTGTTATCACATAGATTATTttgggttgaaatgatgtggaaacaatgttgattcaaccagtttttgcccagtgggtactTTGTTTGCTTGTATGTGATTGAAACTCTGTCCTTAGTACCAGTGGGGCAGGGAAATATCCTGCTCTGTATCAGTAACCAGGTTTCTATCCAACCATTTCATGCCAATTTAATTACCTAAAGAATtaacaaataaaatgtgtttGTTCAAAATG
>TU2471773
TCAGAATGAATACAGTCAAatgctactagctagctagctaatccaCTCACTGAGCCCGAACAGGAGCCACTAGCTGAGCAAACCATGGGTTTGCTGTCGATTCTGCGAAGACTGAAGCACTCTCCGGACCAGGAGGTGCGGTTACTGTTGCTAGGGCTGGACAACGCTGGCAAGACCACCCTGCTTAAACAGCTGGCCTCAGAGGATGTCAGCCACATCACCCCTACTCAGGGATTCAACATAAAGAGCATGCAGTCCCAGGGATTTAAGCTAAATGTTTGGGACATTGGAGGCCAGCGCAAGATCCGCCCGTACTGGAGGAACTACTTTGAGAACACAGACGTACTGATCTATGTGATTGACAGTTCAGACAGGAAACGCTTTGAAGAGACAGgagcTAGCTGAGTTGATGGAAGAAGAGAAGTTGAGCATGGTGCCACTGTTGATATTTGCCAACAAGCAGGACCTGATGACTGCGGCTCCTGCATCAGAGCTAGCTGAGGGTCTCAACCTGCACACCATCAGAGACCGGGTATGGCAGATCCAGGCCTGCTCTGCAATTACCGCAGAGGGAGTACAGGATGGCATGACGTGGGTGTGCAAGAACATAGCAGTTCGTAAGAAGTGACGCCAGGGGTATACTTATTCCCAAAGACTCAAACGAAGGGTAGGAGGTGAAAGGTGGAGTGGTGTTTATTATCAAAGCTTTTGACTTGCTGTCATAATATGTTTTAAAAGTATTGTGATATTTTTTGGACTAGATCCTGAGCCAGTTGCAATAGAGTAAATACTTTAAAGAGAAAGTTTCTGTAATGTTGACATTACCAGCATTTTATTAATGCTTCTCcagttgtatatactgtatatacgtTATTATTTAAACATTTCAATTATTCAGATATTACTCCACTGTCATTTCTGTGTGCTTACTTTTGCCACCTTTTTGTAATAGTCAGGAGGCTTATTGTGAAGATGTCTACATTATGAAAGTAGTTTTTTAAGAATGAACAGCTGAATAGACacgacccactgggcacagacatcagttctaacgtctagttttgatttacatttggttgagttgtcaactaacctgaattcaacgtgaaataaacaaaaacttTCATCGTGTCATTGGATTtcggttaaaagttgggtgaaaaaaaaacacaacatgcccttatgttgatgacatttagttttccatgttgattccaTGTTATCACATAGATTATTttgggttgaaatgatgtggaaacaatgttgattcaaccagtttttgcccagtgggtactTTGTTTGCTTGTATGTGATTGAAACTCTGTCCTTAGTACCAGTGGGGCAGGGAAATATCCTGCTCTGTATCAGTAACCAGGTTTCTATCCAACCATTTCATGCCAATTTAATTACCTAAAGAATtaacaaataaaatgtgtttGTTCA

Function

NR:

description
PREDICTED: ADP-ribosylation factor-like protein 3 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590893.2 False 1384 mRNA 0.42 5 20088225 20092454
XM_021590894.2 False 1488 mRNA 0.42 6 20088225 20093695
TU2471773 True 1443 TUCP 0.42 6 20088230 20093660
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Neighbor

gene id symbol gene type direction distance location
LOC110509787 LOC106563295 coding downstream 24442 20050795 ~ 20063783 (-)
LOC110509785 LOC106563298 coding downstream 62317 20023128 ~ 20025908 (-)
LOC110509780 LOC106563302 coding downstream 137601 19946567 ~ 19950624 (-)
traf2 LOC106563303 coding downstream 182352 19882762 ~ 19905873 (-)
LOC110509775 LOC106563308 coding downstream 247541 19837235 ~ 19840684 (-)
lman2la lman2l coding upstream 45261 20138956 ~ 20143762 (-)
LOC110509794 ddx54 coding upstream 667966 20761661 ~ 20772043 (-)
LOC110509795 LOC106563284 coding upstream 718041 20811736 ~ 20869832 (-)
LOC110509797 exos2 coding upstream 777777 20871472 ~ 20878088 (-)
LOC110509798 LOC106563283 coding upstream 786719 20880412 ~ 20885181 (-)
G2162126 NA non-coding downstream 5221 20082762 ~ 20083004 (-)
G2162100 LOC106563296 non-coding downstream 57265 20029093 ~ 20030960 (-)
G2162098 NA non-coding downstream 60933 20027001 ~ 20027292 (-)
G2162097 NA non-coding downstream 65191 20022702 ~ 20023034 (-)
G2162095 NA non-coding downstream 66284 20021638 ~ 20021941 (-)
G2162136 NA non-coding upstream 5850 20099545 ~ 20099749 (-)
G2162137 NA non-coding upstream 6448 20100143 ~ 20100359 (-)
G2162150 NA non-coding upstream 14339 20108034 ~ 20108286 (-)
G2162160 NA non-coding upstream 22599 20116294 ~ 20117019 (-)
G2162186 NA non-coding upstream 32512 20126207 ~ 20126461 (-)
G2162127 NA other downstream 4607 20083145 ~ 20083618 (-)
G2162005 NA other downstream 103446 19984545 ~ 19984779 (-)
LOC110509757 LOC106563370 other downstream 811219 19275539 ~ 19277044 (-)
G2158111 akna other downstream 3441628 16643681 ~ 16646597 (-)
G2158088 LOC100136012 other downstream 3480219 16607625 ~ 16608006 (-)
G2162405 LOC106563289 other upstream 215494 20309189 ~ 20309802 (-)
G2162422 LOC106563345 other upstream 236053 20329748 ~ 20330138 (-)
surf4 LOC106563281 other upstream 876637 20970332 ~ 20978032 (-)
rabepk rabepk other upstream 1051454 21138218 ~ 21146494 (-)
G2163913 NA other upstream 1502856 21596551 ~ 21597495 (-)

Expression

LOC110509788(LOC106563294) Expression in all Baseline Samples

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LOC110509788(LOC106563294) Expression in each Bioproject

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LOC110509788(LOC106563294) Expression in each Sample
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Co-expression Network